Wall clock time and date at job start Tue Mar 31 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21293 * 120.00093 * 2 1 4 4 C 1.46860 * 119.99628 * 180.02562 * 2 1 3 5 5 C 1.40043 * 120.11511 * 0.22427 * 4 2 1 6 6 C 1.36582 * 120.00477 * 180.27917 * 5 4 2 7 7 C 1.39083 * 120.24405 * 359.49013 * 6 5 4 8 8 O 1.35664 * 119.88676 * 180.27684 * 7 6 5 9 9 C 1.42903 * 116.99906 * 0.02562 * 8 7 6 10 10 C 1.50694 * 109.47461 * 179.97438 * 9 8 7 11 11 O 1.21286 * 119.99766 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00338 * 179.97438 * 10 9 8 13 13 C 1.46495 * 119.99839 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47129 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99653 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00563 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00020 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99592 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47260 * 89.99990 * 18 16 14 20 20 H 1.48500 * 109.47050 * 209.99996 * 18 16 14 21 21 H 1.48498 * 109.47250 * 330.00044 * 18 16 14 22 22 C 1.39076 * 120.23138 * 0.26160 * 7 6 5 23 23 C 1.50700 * 120.00893 * 180.02562 * 22 7 6 24 24 C 1.37656 * 119.98723 * 0.02562 * 22 7 6 25 25 H 1.09001 * 109.46998 * 269.99832 * 1 2 3 26 26 H 1.09001 * 109.47078 * 29.99741 * 1 2 3 27 27 H 1.08998 * 109.47173 * 149.99355 * 1 2 3 28 28 H 1.07995 * 119.99984 * 0.02562 * 5 4 2 29 29 H 1.08002 * 119.87971 * 179.77766 * 6 5 4 30 30 H 1.09001 * 109.47291 * 300.00155 * 9 8 7 31 31 H 1.09003 * 109.47144 * 59.99240 * 9 8 7 32 32 H 0.96996 * 119.99752 * 0.02562 * 12 10 9 33 33 H 1.08998 * 109.48052 * 300.00579 * 13 12 10 34 34 H 1.09008 * 109.47379 * 60.01217 * 13 12 10 35 35 H 0.97004 * 119.99196 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.47268 * 89.99761 * 23 22 7 37 37 H 1.09004 * 109.47199 * 210.00380 * 23 22 7 38 38 H 1.09002 * 109.46755 * 329.99698 * 23 22 7 39 39 H 1.07997 * 120.12015 * 179.97438 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2413 -1.2719 -0.0006 5 6 1.5434 -2.4861 -0.0059 6 6 2.2285 -3.6676 -0.0006 7 6 3.6193 -3.6710 -0.0007 8 8 4.2924 -4.8489 -0.0012 9 6 3.5089 -6.0439 -0.0021 10 6 4.4215 -7.2431 -0.0031 11 8 5.6246 -7.0895 -0.0026 12 7 3.9008 -8.4862 -0.0036 13 6 4.7881 -9.6519 -0.0051 14 6 3.9618 -10.9122 -0.0060 15 1 2.8835 -10.8508 -0.0058 16 6 4.5822 -12.1435 -0.0070 17 7 3.8610 -13.2432 -0.0082 18 14 6.4472 -12.2495 -0.0065 19 1 6.9410 -12.2789 1.3937 20 1 6.8728 -13.4875 -0.7076 21 1 7.0104 -11.0664 -0.7052 22 6 4.3225 -2.4711 -0.0007 23 6 5.8294 -2.4806 -0.0014 24 6 3.6416 -1.2747 0.0000 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 0.4635 -2.4881 -0.0099 29 1 1.6882 -4.6028 -0.0011 30 1 2.8796 -6.0665 0.8877 31 1 2.8801 -6.0654 -0.8922 32 1 2.9387 -8.6090 -0.0036 33 1 5.4164 -9.6293 -0.8955 34 1 5.4177 -9.6306 0.8845 35 1 4.2976 -14.1094 -0.0085 36 1 6.1923 -2.4826 -1.0292 37 1 6.1986 -1.5931 0.5126 38 1 6.1873 -3.3730 0.5121 39 1 4.1855 -0.3416 0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134568383.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:07 Heat of formation + Delta-G solvation = -92.517540 kcal Electronic energy + Delta-G solvation = -21809.419380 eV Core-core repulsion = 18296.418463 eV Total energy + Delta-G solvation = -3513.000917 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.85412 -39.67598 -38.79466 -37.19105 -34.45795 -33.48986 -32.48866 -31.25094 -30.06939 -29.26561 -27.33273 -26.69729 -23.64630 -22.70721 -21.83231 -20.12380 -19.74073 -18.44757 -17.62465 -16.75005 -16.56067 -16.48003 -15.84756 -15.33344 -15.27073 -14.99990 -14.49690 -14.47803 -14.15755 -13.66192 -13.54262 -13.45596 -13.05184 -12.65096 -12.59445 -12.50987 -12.46932 -12.39783 -12.01853 -11.97704 -11.22880 -11.20012 -11.08238 -10.83458 -10.04663 -10.03855 -9.60266 -9.41937 -9.24931 -8.87104 -8.43815 -8.33673 -6.29371 -4.32746 0.41970 1.02379 2.12323 2.60879 2.93890 3.21772 3.29052 3.36502 3.45376 3.77801 3.93894 4.26494 4.31551 4.48485 4.67996 4.74490 4.85385 4.97195 4.98284 5.01677 5.05117 5.06288 5.11041 5.25619 5.37134 5.54996 5.59570 5.60990 5.89199 5.94583 6.04026 6.19375 6.38617 6.66675 6.94876 6.97675 7.09404 7.25119 7.25859 7.98099 8.34317 8.61263 8.73081 9.29708 10.82292 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.036446 B = 0.002596 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.083232 B =10784.943345 C =11521.974688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.400 3.600 3 O -0.468 6.468 4 C -0.219 4.219 5 C -0.035 4.035 6 C -0.222 4.222 7 C 0.169 3.831 8 O -0.278 6.278 9 C 0.037 3.963 10 C 0.502 3.498 11 O -0.534 6.534 12 N -0.699 5.699 13 C 0.222 3.778 14 C -0.547 4.547 15 H 0.081 0.919 16 C 0.079 3.921 17 N -0.890 5.890 18 Si 0.877 3.123 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.260 1.260 22 C -0.129 4.129 23 C -0.108 4.108 24 C -0.021 4.021 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.398 0.602 33 H 0.028 0.972 34 H 0.023 0.977 35 H 0.269 0.731 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.453 22.664 0.042 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.279 3.721 3 O -0.345 6.345 4 C -0.220 4.220 5 C -0.053 4.053 6 C -0.241 4.241 7 C 0.121 3.879 8 O -0.188 6.188 9 C -0.042 4.042 10 C 0.285 3.715 11 O -0.411 6.411 12 N -0.350 5.350 13 C 0.100 3.900 14 C -0.585 4.585 15 H 0.099 0.901 16 C -0.126 4.126 17 N -0.527 5.527 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.185 1.185 22 C -0.130 4.130 23 C -0.165 4.165 24 C -0.040 4.040 25 H 0.115 0.885 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.153 0.847 29 H 0.155 0.845 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.232 0.768 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.031 23.027 0.038 23.804 hybrid contribution -0.015 -0.608 0.020 0.608 sum -6.046 22.420 0.058 23.221 Atomic orbital electron populations 1.22239 0.93978 1.04848 1.04735 1.22332 0.91538 0.87549 0.70645 1.90540 1.72157 1.34409 1.37412 1.20346 0.94391 0.94741 1.12499 1.20958 1.00017 0.90821 0.93481 1.21041 0.92869 0.99991 1.10192 1.19319 0.90556 0.85880 0.92124 1.86151 1.34532 1.11402 1.86747 1.22699 0.94241 0.83389 1.03847 1.19866 0.88924 0.84143 0.78550 1.90716 1.15006 1.85931 1.49434 1.46056 1.11256 1.05086 1.72574 1.19557 0.90604 0.82696 0.97094 1.21046 0.95023 0.88579 1.53816 0.90149 1.24788 0.98707 0.95313 0.93746 1.69874 1.35950 0.97827 1.49041 0.86819 0.85412 0.78355 0.79139 1.19766 1.20801 1.18470 1.19283 0.97193 0.89793 1.06697 1.20655 0.89672 1.03328 1.02817 1.21144 0.92901 0.97341 0.92584 0.88489 0.89508 0.89533 0.84695 0.84458 0.88844 0.88842 0.76791 0.95425 0.95872 0.92143 0.91066 0.91546 0.90347 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.07 9.75 36.01 0.35 -0.72 16 2 C 0.40 3.72 7.22 -30.82 -0.22 3.49 16 3 O -0.47 -5.95 17.09 5.55 0.09 -5.85 16 4 C -0.22 -2.10 5.87 -105.06 -0.62 -2.71 16 5 C -0.03 -0.27 9.31 -39.50 -0.37 -0.64 16 6 C -0.22 -2.05 8.96 -39.87 -0.36 -2.40 16 7 C 0.17 2.00 6.67 -38.96 -0.26 1.74 16 8 O -0.28 -3.93 8.69 -38.60 -0.34 -4.26 16 9 C 0.04 0.46 5.21 36.00 0.19 0.64 16 10 C 0.50 8.97 7.91 -10.99 -0.09 8.88 16 11 O -0.53 -11.97 16.50 -14.36 -0.24 -12.20 16 12 N -0.70 -13.03 5.55 -61.47 -0.34 -13.37 16 13 C 0.22 5.21 4.50 -5.20 -0.02 5.19 16 14 C -0.55 -14.39 9.83 -34.44 -0.34 -14.72 16 15 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 16 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 17 N -0.89 -25.72 13.96 55.43 0.77 -24.94 16 18 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 19 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 22 C -0.13 -1.48 5.89 -104.52 -0.62 -2.10 16 23 C -0.11 -1.17 9.79 36.01 0.35 -0.82 16 24 C -0.02 -0.23 9.24 -39.12 -0.36 -0.59 16 25 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.30 6.45 -51.93 -0.33 -0.04 16 28 H 0.14 0.63 6.33 -52.49 -0.33 0.30 16 29 H 0.14 0.96 6.27 -52.49 -0.33 0.63 16 30 H 0.09 0.89 7.65 -51.93 -0.40 0.49 16 31 H 0.09 0.89 7.65 -51.93 -0.40 0.49 16 32 H 0.40 6.20 8.32 -40.82 -0.34 5.86 16 33 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 34 H 0.02 0.57 7.57 -51.92 -0.39 0.18 16 35 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 38 H 0.08 0.97 7.53 -51.93 -0.39 0.58 16 39 H 0.14 1.39 7.65 -52.49 -0.40 0.99 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -34.01 336.89 -7.05 -41.06 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -4.96 Total: 1.00 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.46 Total: -2.70 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.43 Total: -38.31 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.48 Total: -22.32 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.01 -7.05 -41.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134568383.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.456 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds