Wall clock time and date at job start Tue Mar 31 2020 06:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21293 * 120.00093 * 2 1 4 4 C 1.46860 * 119.99628 * 180.02562 * 2 1 3 5 5 C 1.40043 * 120.11511 * 0.22427 * 4 2 1 6 6 C 1.36582 * 120.00477 * 180.27917 * 5 4 2 7 7 C 1.39083 * 120.24405 * 359.49013 * 6 5 4 8 8 O 1.35664 * 119.88676 * 180.27684 * 7 6 5 9 9 C 1.42903 * 116.99906 * 0.02562 * 8 7 6 10 10 C 1.50694 * 109.47461 * 179.97438 * 9 8 7 11 11 O 1.21286 * 119.99766 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00338 * 179.97438 * 10 9 8 13 13 C 1.46495 * 119.99839 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47129 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99653 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00563 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00020 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99592 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47260 * 89.99990 * 18 16 14 20 20 H 1.48500 * 109.47050 * 209.99996 * 18 16 14 21 21 H 1.48498 * 109.47250 * 330.00044 * 18 16 14 22 22 C 1.39076 * 120.23138 * 0.26160 * 7 6 5 23 23 C 1.50700 * 120.00893 * 180.02562 * 22 7 6 24 24 C 1.37656 * 119.98723 * 0.02562 * 22 7 6 25 25 H 1.09001 * 109.46998 * 269.99832 * 1 2 3 26 26 H 1.09001 * 109.47078 * 29.99741 * 1 2 3 27 27 H 1.08998 * 109.47173 * 149.99355 * 1 2 3 28 28 H 1.07995 * 119.99984 * 0.02562 * 5 4 2 29 29 H 1.08002 * 119.87971 * 179.77766 * 6 5 4 30 30 H 1.09001 * 109.47291 * 300.00155 * 9 8 7 31 31 H 1.09003 * 109.47144 * 59.99240 * 9 8 7 32 32 H 0.96996 * 119.99752 * 0.02562 * 12 10 9 33 33 H 1.08998 * 109.48052 * 300.00579 * 13 12 10 34 34 H 1.09008 * 109.47379 * 60.01217 * 13 12 10 35 35 H 0.97004 * 119.99196 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.47268 * 89.99761 * 23 22 7 37 37 H 1.09004 * 109.47199 * 210.00380 * 23 22 7 38 38 H 1.09002 * 109.46755 * 329.99698 * 23 22 7 39 39 H 1.07997 * 120.12015 * 179.97438 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2413 -1.2719 -0.0006 5 6 1.5434 -2.4861 -0.0059 6 6 2.2285 -3.6676 -0.0006 7 6 3.6193 -3.6710 -0.0007 8 8 4.2924 -4.8489 -0.0012 9 6 3.5089 -6.0439 -0.0021 10 6 4.4215 -7.2431 -0.0031 11 8 5.6246 -7.0895 -0.0026 12 7 3.9008 -8.4862 -0.0036 13 6 4.7881 -9.6519 -0.0051 14 6 3.9618 -10.9122 -0.0060 15 1 2.8835 -10.8508 -0.0058 16 6 4.5822 -12.1435 -0.0070 17 7 3.8610 -13.2432 -0.0082 18 14 6.4472 -12.2495 -0.0065 19 1 6.9410 -12.2789 1.3937 20 1 6.8728 -13.4875 -0.7076 21 1 7.0104 -11.0664 -0.7052 22 6 4.3225 -2.4711 -0.0007 23 6 5.8294 -2.4806 -0.0014 24 6 3.6416 -1.2747 0.0000 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 0.4635 -2.4881 -0.0099 29 1 1.6882 -4.6028 -0.0011 30 1 2.8796 -6.0665 0.8877 31 1 2.8801 -6.0654 -0.8922 32 1 2.9387 -8.6090 -0.0036 33 1 5.4164 -9.6293 -0.8955 34 1 5.4177 -9.6306 0.8845 35 1 4.2976 -14.1094 -0.0085 36 1 6.1923 -2.4826 -1.0292 37 1 6.1986 -1.5931 0.5126 38 1 6.1873 -3.3730 0.5121 39 1 4.1855 -0.3416 0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134568383.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:06 Heat of formation + Delta-G solvation = -115.423488 kcal Electronic energy + Delta-G solvation = -21810.412656 eV Core-core repulsion = 18296.418463 eV Total energy + Delta-G solvation = -3513.994193 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.71032 -40.70897 -39.96254 -38.10059 -36.20773 -34.46909 -34.23004 -31.95941 -31.14114 -30.30059 -28.75707 -27.52753 -24.61122 -24.00427 -23.03065 -21.58738 -20.47318 -19.35490 -19.18722 -18.04805 -17.49214 -17.47711 -17.00320 -16.85723 -16.05124 -16.01949 -15.79286 -15.76552 -15.15798 -14.85727 -14.58965 -14.39899 -14.27920 -14.06290 -14.02418 -13.50328 -13.12307 -13.09418 -13.01918 -12.90644 -12.80869 -12.71682 -12.08769 -11.95522 -11.88311 -11.66403 -10.93080 -10.91740 -10.75638 -10.02912 -9.97823 -9.24379 -8.40445 -6.47249 -0.32877 0.30421 1.32363 1.35518 1.40833 1.46990 1.55803 1.56933 2.27528 2.72453 2.73575 2.95268 3.16131 3.57496 3.72831 3.81504 4.02143 4.11360 4.15113 4.20338 4.24397 4.43198 4.51910 4.70877 4.72204 4.74129 4.76795 4.89256 5.00225 5.06996 5.18761 5.23921 5.24673 5.30511 5.41306 5.42029 5.63521 6.05461 6.23755 6.53393 6.58481 6.74703 7.13619 7.31373 8.73846 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.036446 B = 0.002596 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.083232 B =10784.943345 C =11521.974688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.399 3.601 3 O -0.513 6.513 4 C -0.227 4.227 5 C -0.021 4.021 6 C -0.218 4.218 7 C 0.148 3.852 8 O -0.309 6.309 9 C 0.047 3.953 10 C 0.500 3.500 11 O -0.585 6.585 12 N -0.695 5.695 13 C 0.232 3.768 14 C -0.545 4.545 15 H 0.066 0.934 16 C 0.028 3.972 17 N -0.929 5.929 18 Si 0.933 3.067 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.261 1.261 22 C -0.148 4.148 23 C -0.106 4.106 24 C -0.033 4.033 25 H 0.116 0.884 26 H 0.088 0.912 27 H 0.113 0.887 28 H 0.178 0.822 29 H 0.167 0.833 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.415 0.585 33 H 0.014 0.986 34 H 0.013 0.987 35 H 0.272 0.728 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.643 23.556 0.084 25.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.282 3.718 3 O -0.393 6.393 4 C -0.229 4.229 5 C -0.038 4.038 6 C -0.236 4.236 7 C 0.102 3.898 8 O -0.221 6.221 9 C -0.031 4.031 10 C 0.286 3.714 11 O -0.466 6.466 12 N -0.347 5.347 13 C 0.108 3.892 14 C -0.583 4.583 15 H 0.084 0.916 16 C -0.173 4.173 17 N -0.568 5.568 18 Si 0.757 3.243 19 H -0.191 1.191 20 H -0.199 1.199 21 H -0.186 1.186 22 C -0.148 4.148 23 C -0.162 4.162 24 C -0.052 4.052 25 H 0.134 0.866 26 H 0.106 0.894 27 H 0.132 0.868 28 H 0.195 0.805 29 H 0.185 0.815 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.252 0.748 33 H 0.032 0.968 34 H 0.031 0.969 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.271 23.931 0.080 25.320 hybrid contribution 0.594 -0.813 0.008 1.007 sum -7.677 23.118 0.088 24.359 Atomic orbital electron populations 1.22283 0.90360 1.06291 1.06276 1.22953 0.93449 0.86585 0.68853 1.90533 1.73389 1.35731 1.39665 1.20630 0.94031 0.96021 1.12171 1.21380 1.01964 0.89352 0.91132 1.21387 0.91594 1.01763 1.08900 1.19521 0.91865 0.84866 0.93588 1.86092 1.36046 1.12362 1.87590 1.22692 0.92582 0.80497 1.07304 1.20799 0.89017 0.85092 0.76457 1.90694 1.17698 1.86718 1.51480 1.45813 1.11600 1.04488 1.72807 1.19138 0.90659 0.83522 0.95883 1.21262 0.94709 0.89719 1.52573 0.91638 1.25551 1.02797 0.95221 0.93703 1.69969 1.37717 0.98459 1.50613 0.85920 0.80559 0.78398 0.79400 1.19095 1.19946 1.18565 1.19385 0.97269 0.90408 1.07768 1.20607 0.90150 1.02858 1.02624 1.21196 0.93930 0.96837 0.93212 0.86620 0.89351 0.86846 0.80488 0.81529 0.85160 0.85173 0.74842 0.96843 0.96937 0.91846 0.91195 0.90234 0.92468 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.35 9.75 71.24 0.69 -0.65 16 2 C 0.40 6.64 7.22 27.95 0.20 6.84 16 3 O -0.51 -12.87 17.09 -3.07 -0.05 -12.93 16 4 C -0.23 -3.87 5.87 -20.15 -0.12 -3.98 16 5 C -0.02 -0.24 9.31 22.32 0.21 -0.03 16 6 C -0.22 -3.14 8.96 22.09 0.20 -2.94 16 7 C 0.15 3.26 6.67 22.67 0.15 3.41 16 8 O -0.31 -8.34 8.69 -70.77 -0.62 -8.95 16 9 C 0.05 1.01 5.21 71.23 0.37 1.38 16 10 C 0.50 17.24 7.91 87.65 0.69 17.93 16 11 O -0.59 -26.42 16.50 15.99 0.26 -26.16 16 12 N -0.70 -25.03 5.55 -466.79 -2.59 -27.62 16 13 C 0.23 10.81 4.50 85.63 0.38 11.19 16 14 C -0.54 -28.63 9.83 25.60 0.25 -28.38 16 15 H 0.07 3.56 7.84 -2.91 -0.02 3.54 16 16 C 0.03 1.53 5.47 84.66 0.46 1.99 16 17 N -0.93 -53.89 13.96 21.45 0.30 -53.59 16 18 Si 0.93 43.01 27.47 68.60 1.88 44.89 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.26 -11.99 6.54 99.48 0.65 -11.34 16 22 C -0.15 -3.36 5.89 -19.80 -0.12 -3.48 16 23 C -0.11 -2.39 9.79 71.24 0.70 -1.69 16 24 C -0.03 -0.70 9.24 22.57 0.21 -0.49 16 25 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.11 0.17 6.45 -2.39 -0.02 0.15 16 28 H 0.18 0.52 6.33 -2.91 -0.02 0.50 16 29 H 0.17 1.36 6.27 -2.91 -0.02 1.34 16 30 H 0.13 1.89 7.65 -2.39 -0.02 1.87 16 31 H 0.13 1.89 7.65 -2.39 -0.02 1.87 16 32 H 0.41 12.05 8.32 -92.71 -0.77 11.28 16 33 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 34 H 0.01 0.62 7.57 -2.38 -0.02 0.60 16 35 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 38 H 0.06 1.51 7.53 -2.39 -0.02 1.49 16 39 H 0.13 2.80 7.65 -2.91 -0.02 2.78 16 Total: -1.00 -76.91 336.89 3.74 -73.18 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.26 Total: 10.08 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 4.29 Total: 1.10 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -2.29 Total: -81.21 kcal Atomic # 8 Polarization: -47.63 SS G_CDS: -0.40 Total: -48.03 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.88 Total: 44.89 kcal Total: -76.91 3.74 -73.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134568383.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.247 kcal (2) G-P(sol) polarization free energy of solvation -76.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds