Wall clock time and date at job start Tue Mar 31 2020 07:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50708 * 120.00019 * 2 1 4 4 C 1.52993 * 109.47033 * 124.99748 * 3 2 1 5 5 O 1.42899 * 109.47482 * 180.02562 * 4 3 2 6 6 C 1.42895 * 114.00769 * 180.02562 * 5 4 3 7 7 C 1.50691 * 109.47562 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99983 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00340 * 180.02562 * 7 6 5 10 10 C 1.39924 * 120.00457 * 175.49244 * 9 7 6 11 11 C 1.38963 * 120.03756 * 214.85052 * 10 9 7 12 12 C 1.38157 * 120.06766 * 179.71736 * 11 10 9 13 13 C 1.38164 * 120.13679 * 0.55238 * 12 11 10 14 14 C 1.38908 * 120.07372 * 359.71582 * 13 12 11 15 15 O 1.35749 * 120.03567 * 179.97438 * 14 13 12 16 16 C 1.34836 * 117.00019 * 5.37193 * 15 14 13 17 17 H 1.07996 * 119.99803 * 354.96312 * 16 15 14 18 18 C 1.38652 * 120.00259 * 174.95934 * 16 15 14 19 19 N 1.31558 * 119.99576 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00155 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47304 * 90.00071 * 20 18 16 22 22 H 1.48502 * 109.47177 * 210.00304 * 20 18 16 23 23 H 1.48501 * 109.47172 * 329.99889 * 20 18 16 24 24 C 1.38714 * 120.03440 * 35.11293 * 10 9 7 25 25 H 1.07998 * 120.00021 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.99962 * 179.97438 * 1 2 3 27 27 H 1.08004 * 120.00273 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47028 * 4.99790 * 3 2 1 29 29 H 1.08997 * 109.46809 * 244.99955 * 3 2 1 30 30 H 1.08997 * 109.47179 * 60.00135 * 4 3 2 31 31 H 1.09000 * 109.47586 * 300.00314 * 4 3 2 32 32 H 1.08999 * 109.46854 * 300.00075 * 6 5 4 33 33 H 1.09005 * 109.46957 * 59.99896 * 6 5 4 34 34 H 0.97001 * 120.00157 * 355.48319 * 9 7 6 35 35 H 1.08002 * 119.96203 * 359.96515 * 11 10 9 36 36 H 1.07997 * 119.93113 * 180.24794 * 12 11 10 37 37 H 1.07999 * 119.96303 * 179.75066 * 13 12 11 38 38 H 0.97005 * 120.00048 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.07090 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 3.0350 1.3331 1.1816 5 8 3.7491 2.5709 1.1821 6 6 4.6885 2.6997 2.2511 7 6 5.3796 4.0353 2.1544 8 8 5.0960 4.8014 1.2579 9 7 6.3136 4.3783 3.0635 10 6 7.0224 5.5762 2.9208 11 6 8.3550 5.6464 3.3083 12 6 9.0571 6.8273 3.1622 13 6 8.4339 7.9450 2.6414 14 6 7.1004 7.8829 2.2573 15 8 6.4886 8.9816 1.7461 16 6 7.2587 10.0678 1.5336 17 1 8.2933 10.0653 1.8435 18 6 6.7225 11.1881 0.9172 19 7 5.4624 11.1909 0.5392 20 14 7.7896 12.6926 0.6222 21 1 8.4450 12.5820 -0.7058 22 1 6.9447 13.9133 0.6570 23 1 8.8275 12.7786 1.6808 24 6 6.3939 6.6966 2.3974 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 3.7399 0.5066 1.0921 31 1 2.4772 1.2356 2.1130 32 1 4.1654 2.6299 3.2048 33 1 5.4280 1.9018 2.1830 34 1 6.4945 3.7946 3.8169 35 1 8.8435 4.7757 3.7203 36 1 10.0939 6.8782 3.4604 37 1 8.9842 8.8678 2.5322 38 1 5.0871 11.9748 0.1082 39 1 5.3572 6.6457 2.0991 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000138550825.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:17 Heat of formation + Delta-G solvation = -56.742200 kcal Electronic energy + Delta-G solvation = -21729.254536 eV Core-core repulsion = 18217.804954 eV Total energy + Delta-G solvation = -3511.449582 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.19013 -38.75704 -37.94326 -36.42239 -35.22401 -34.07346 -32.21435 -30.44860 -29.49114 -28.75013 -27.02641 -25.23216 -23.28540 -22.40029 -21.39923 -20.37344 -20.01356 -18.26850 -17.48950 -17.00648 -16.68100 -16.54957 -15.48125 -15.40023 -15.03788 -14.87074 -14.53342 -14.22154 -13.89063 -13.59253 -13.46874 -13.32207 -12.75704 -12.67888 -12.43464 -11.82220 -11.72216 -11.50229 -11.45327 -11.37639 -11.17876 -10.98688 -10.75410 -10.43115 -9.93390 -9.76892 -9.70306 -9.62925 -9.13463 -8.78362 -7.69114 -7.16451 -6.38511 -3.97871 1.89152 2.01499 2.36193 2.74295 2.88284 3.16563 3.18468 3.22364 3.81958 4.02364 4.55683 4.62402 4.69187 4.77625 4.85652 4.90916 5.01469 5.04656 5.12663 5.15691 5.38129 5.51904 5.64038 5.65604 5.76331 5.84079 6.11082 6.23358 6.28016 6.40429 6.41194 6.68752 6.78568 6.95893 7.05739 7.10608 7.37007 7.50428 7.69574 7.81812 8.06059 8.36134 9.06078 9.77533 10.79374 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018627 B = 0.002890 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.855063 B = 9687.560556 C =11062.844756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.095 4.095 4 C 0.066 3.934 5 O -0.362 6.362 6 C 0.050 3.950 7 C 0.503 3.497 8 O -0.486 6.486 9 N -0.669 5.669 10 C 0.175 3.825 11 C -0.236 4.236 12 C -0.059 4.059 13 C -0.245 4.245 14 C 0.166 3.834 15 O -0.173 6.173 16 C -0.392 4.392 17 H 0.093 0.907 18 C 0.038 3.962 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.187 4.187 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.405 0.595 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.128 0.872 38 H 0.270 0.730 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.049 -20.936 5.148 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.133 4.133 4 C -0.011 4.011 5 O -0.280 6.280 6 C -0.031 4.031 7 C 0.288 3.712 8 O -0.357 6.357 9 N -0.316 5.316 10 C 0.082 3.918 11 C -0.257 4.257 12 C -0.078 4.078 13 C -0.265 4.265 14 C 0.112 3.888 15 O -0.076 6.076 16 C -0.468 4.468 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.495 5.495 20 Si 0.767 3.233 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.208 4.208 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.128 0.872 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.240 0.760 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.146 0.854 38 H 0.080 0.920 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.750 -20.055 4.125 20.659 hybrid contribution 0.765 0.118 0.472 0.907 sum -1.984 -19.938 4.597 20.557 Atomic orbital electron populations 1.23926 0.95918 1.02112 1.00523 1.22800 0.96013 0.97926 1.00446 1.20654 0.98037 0.95957 0.98603 1.22488 0.93979 0.85989 0.98629 1.88034 1.54245 1.37375 1.48316 1.22135 0.93186 0.95603 0.92126 1.20339 0.80175 0.88382 0.82312 1.90835 1.60684 1.51200 1.32968 1.43222 1.38966 1.21969 1.27455 1.17149 0.90435 0.84053 1.00133 1.20257 0.92708 0.99014 1.13688 1.20498 0.98214 0.92141 0.96916 1.21183 0.95908 1.00004 1.09393 1.19141 0.90722 0.87668 0.91310 1.83996 1.36121 1.17801 1.69663 1.21348 0.94995 0.90237 1.40247 0.88977 1.25313 0.96544 0.98718 0.96026 1.70061 1.12317 1.29997 1.37084 0.85701 0.78936 0.79606 0.79089 1.19879 1.20290 1.19201 1.20189 1.01555 0.89660 1.09437 0.88292 0.88338 0.87222 0.90288 0.89793 0.93036 0.93009 0.90183 0.90165 0.75966 0.87361 0.87021 0.85433 0.92016 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.30 14.32 29.01 0.42 -0.88 16 2 C -0.15 -1.12 9.52 -36.02 -0.34 -1.47 16 3 C -0.10 -0.87 6.03 -27.88 -0.17 -1.03 16 4 C 0.07 0.60 5.92 37.15 0.22 0.82 16 5 O -0.36 -4.83 9.87 -55.14 -0.54 -5.38 16 6 C 0.05 0.53 6.42 36.00 0.23 0.77 16 7 C 0.50 8.00 7.75 -10.99 -0.09 7.91 16 8 O -0.49 -10.65 13.94 -14.36 -0.20 -10.85 16 9 N -0.67 -9.59 5.34 -9.88 -0.05 -9.64 16 10 C 0.18 3.31 6.30 -83.72 -0.53 2.79 16 11 C -0.24 -4.04 9.96 -39.34 -0.39 -4.43 16 12 C -0.06 -1.08 10.03 -39.64 -0.40 -1.48 16 13 C -0.25 -5.47 9.17 -39.36 -0.36 -5.84 16 14 C 0.17 4.28 6.64 -39.13 -0.26 4.02 16 15 O -0.17 -5.21 9.76 0.04 0.00 -5.21 16 16 C -0.39 -11.33 9.49 30.89 0.29 -11.04 16 17 H 0.09 2.44 5.20 -52.49 -0.27 2.16 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -26.18 13.67 55.48 0.76 -25.42 16 20 Si 0.94 21.04 29.55 -169.99 -5.02 16.02 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 C -0.19 -4.42 8.64 -39.21 -0.34 -4.76 16 25 H 0.10 0.69 7.84 -52.49 -0.41 0.28 16 26 H 0.10 0.54 8.06 -52.49 -0.42 0.12 16 27 H 0.11 0.65 8.06 -52.48 -0.42 0.23 16 28 H 0.08 0.78 7.79 -51.93 -0.40 0.38 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.41 3.81 8.82 -40.82 -0.36 3.45 16 35 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.13 2.82 5.63 -52.49 -0.30 2.52 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.13 3.42 6.23 -52.49 -0.33 3.09 16 LS Contribution 341.89 15.07 5.15 5.15 Total: -1.00 -36.35 341.89 -6.73 -43.08 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.01 Total: 5.88 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -1.81 Total: -13.63 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.71 Total: -35.06 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.74 Total: -21.44 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.35 -6.73 -43.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138550825.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.665 kcal (2) G-P(sol) polarization free energy of solvation -36.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds