Wall clock time and date at job start Tue Mar 31 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.86888 * 2 1 4 4 N 1.46498 * 109.47089 * 59.55047 * 3 2 1 5 5 S 1.65602 * 119.99612 * 164.71987 * 4 3 2 6 6 O 1.42109 * 104.27511 * 181.34803 * 5 4 3 7 7 O 1.42098 * 104.28120 * 309.20801 * 5 4 3 8 8 C 1.81394 * 104.44973 * 65.28269 * 5 4 3 9 9 C 1.53003 * 109.47387 * 179.97438 * 8 5 4 10 10 C 1.53002 * 109.47130 * 179.97438 * 9 8 5 11 11 C 1.50692 * 109.47012 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00112 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00231 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99857 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00269 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47359 * 89.99846 * 15 13 11 17 17 H 1.48501 * 109.47327 * 209.99977 * 15 13 11 18 18 H 1.48497 * 109.47201 * 330.00278 * 15 13 11 19 19 C 1.54096 * 110.00231 * 238.91440 * 2 1 3 20 20 C 1.54815 * 104.18752 * 242.53502 * 19 2 1 21 21 C 1.54997 * 102.08919 * 20.88093 * 20 19 2 22 22 O 1.43744 * 109.87580 * 121.00488 * 2 1 3 23 23 H 1.09007 * 109.46719 * 60.69855 * 1 2 3 24 24 H 1.08998 * 109.47351 * 180.69497 * 1 2 3 25 25 H 1.08999 * 109.47253 * 300.70306 * 1 2 3 26 26 H 1.08996 * 109.47377 * 299.55205 * 3 2 1 27 27 H 1.08999 * 109.46886 * 179.55343 * 3 2 1 28 28 H 0.97001 * 120.00384 * 345.00465 * 4 3 2 29 29 H 1.09009 * 109.47044 * 299.99503 * 8 5 4 30 30 H 1.09001 * 109.47747 * 59.99183 * 8 5 4 31 31 H 1.08994 * 109.46789 * 299.99279 * 9 8 5 32 32 H 1.08993 * 109.47045 * 59.99537 * 9 8 5 33 33 H 1.09003 * 109.47270 * 300.00013 * 10 9 8 34 34 H 1.09000 * 109.46896 * 60.00012 * 10 9 8 35 35 H 0.96993 * 120.00008 * 179.97438 * 14 13 11 36 36 H 1.09000 * 110.49136 * 1.20810 * 19 2 1 37 37 H 1.09004 * 110.49144 * 123.86350 * 19 2 1 38 38 H 1.09003 * 110.90780 * 262.68540 * 20 19 2 39 39 H 1.08994 * 110.93614 * 139.09389 * 20 19 2 40 40 H 1.08996 * 110.61740 * 204.47609 * 21 20 19 41 41 H 1.09003 * 110.75207 * 81.54099 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 7 1.5577 2.1361 1.1907 5 16 2.2490 3.5666 1.6576 6 8 1.5505 3.9230 2.8427 7 8 3.6427 3.2904 1.6836 8 6 1.8536 4.7200 0.3146 9 6 2.4448 6.0950 0.6324 10 6 2.1118 7.0676 -0.5007 11 6 2.6935 8.4220 -0.1874 12 1 3.2458 8.5737 0.7282 13 6 2.5214 9.4672 -1.0700 14 7 1.8492 9.2823 -2.1852 15 14 3.2431 11.1458 -0.6819 16 1 4.6190 11.2328 -1.2338 17 1 2.3969 12.2019 -1.2934 18 1 3.2872 11.3374 0.7900 19 6 2.0571 -0.7476 -1.2401 20 6 2.8374 -1.9500 -0.6550 21 6 2.2314 -2.0695 0.7666 22 8 2.0187 -0.6963 1.1587 23 1 -0.3633 0.5030 -0.8963 24 1 -0.3634 -1.0276 0.0125 25 1 -0.3634 0.5247 0.8836 26 1 1.6969 1.9529 -0.8939 27 1 3.1400 1.4313 0.0080 28 1 0.8296 1.7577 1.7080 29 1 2.2767 4.3493 -0.6191 30 1 0.7715 4.8044 0.2148 31 1 2.0213 6.4655 1.5659 32 1 3.5268 6.0109 0.7324 33 1 2.5355 6.6969 -1.4341 34 1 1.0296 7.1517 -0.6011 35 1 1.7279 10.0176 -2.8059 36 1 1.2284 -1.0946 -1.8573 37 1 2.7223 -0.1062 -1.8182 38 1 3.9048 -1.7343 -0.6060 39 1 2.6513 -2.8542 -1.2345 40 1 2.9330 -2.5575 1.4431 41 1 1.2862 -2.6116 0.7392 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156084962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:42 Heat of formation + Delta-G solvation = -140.586499 kcal Electronic energy + Delta-G solvation = -21696.493097 eV Core-core repulsion = 18316.851706 eV Total energy + Delta-G solvation = -3379.641392 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.22149 -36.82393 -35.71240 -35.42906 -34.65060 -32.58363 -32.17462 -31.17256 -27.79170 -27.26862 -25.30920 -23.70954 -22.08607 -20.68930 -20.43783 -19.11120 -17.61964 -17.04712 -16.54456 -16.15564 -15.76630 -15.57328 -15.38678 -14.80399 -14.48136 -14.20034 -14.06646 -13.55666 -13.37406 -12.88951 -12.57469 -12.26627 -12.15278 -12.03607 -11.99318 -11.88211 -11.75035 -11.70575 -11.48334 -11.21335 -11.06714 -10.98275 -10.91454 -10.83241 -10.40948 -9.96156 -9.93610 -9.66274 -9.29717 -9.05883 -8.40212 -6.05345 -4.08163 0.52933 2.90845 3.30984 3.37029 3.41435 3.49542 4.01204 4.13722 4.32679 4.42721 4.43194 4.49831 4.65631 4.72692 4.89972 5.09163 5.15260 5.21830 5.24753 5.25740 5.31337 5.36211 5.43570 5.45347 5.54656 5.63086 5.73264 5.75795 5.90362 5.92208 6.29193 6.46983 6.65063 6.88656 7.00145 7.57612 7.67761 7.92951 8.33721 8.98147 9.56511 11.05938 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.029948 B = 0.003131 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.742951 B = 8940.216562 C = 9333.925062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.095 3.905 3 C 0.124 3.876 4 N -1.118 6.118 5 S 2.602 3.398 6 O -0.964 6.964 7 O -0.962 6.962 8 C -0.610 4.610 9 C -0.106 4.106 10 C 0.031 3.969 11 C -0.526 4.526 12 H 0.058 0.942 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.147 4.147 20 C -0.155 4.155 21 C 0.044 3.956 22 O -0.359 6.359 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.416 0.584 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.261 0.739 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.634 -24.147 0.689 24.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.054 3.946 3 C -0.003 4.003 4 N -0.877 5.877 5 S 2.697 3.303 6 O -0.954 6.954 7 O -0.952 6.952 8 C -0.742 4.742 9 C -0.146 4.146 10 C -0.008 4.008 11 C -0.564 4.564 12 H 0.076 0.924 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.722 3.278 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.185 4.185 20 C -0.193 4.193 21 C -0.033 4.033 22 O -0.278 6.278 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.251 0.749 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.021 -23.773 1.451 23.902 hybrid contribution -0.379 0.734 -0.608 1.026 sum -2.401 -23.038 0.843 23.178 Atomic orbital electron populations 1.22266 0.94302 1.02577 1.03131 1.22288 0.94117 0.92110 0.86057 1.21501 1.00321 0.90885 0.87614 1.55592 1.52352 1.40372 1.39423 1.05258 0.74425 0.74245 0.76334 1.93575 1.74695 1.83119 1.44035 1.93563 1.31727 1.83000 1.86872 1.30562 1.11554 1.13639 1.18412 1.21497 0.99854 0.90410 1.02792 1.19060 0.97270 0.92423 0.92007 1.21265 1.34524 0.94919 1.05705 0.92359 1.25021 0.95218 0.99141 0.95016 1.69955 1.40937 1.32283 1.10320 0.86551 0.79011 0.83560 0.78663 1.20571 1.21185 1.19732 1.23009 1.00808 0.97324 0.97359 1.23134 1.01042 0.98532 0.96603 1.23558 0.99709 0.84562 0.95457 1.88999 1.85885 1.20383 1.32502 0.90976 0.92056 0.91493 0.90387 0.89473 0.74933 0.85613 0.85304 0.91563 0.91571 0.96149 0.96131 0.92917 0.90007 0.89718 0.90198 0.90197 0.88985 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 8.45 37.16 0.31 -0.90 16 2 C 0.10 0.83 0.87 -90.05 -0.08 0.75 16 3 C 0.12 1.24 5.08 -4.04 -0.02 1.22 16 4 N -1.12 -13.06 5.65 -10.61 -0.06 -13.12 16 5 S 2.60 39.69 5.46 -107.50 -0.59 39.10 16 6 O -0.96 -17.64 18.08 -57.54 -1.04 -18.68 16 7 O -0.96 -17.63 17.48 -57.54 -1.01 -18.64 16 8 C -0.61 -9.40 6.08 37.16 0.23 -9.17 16 9 C -0.11 -2.17 5.16 -26.73 -0.14 -2.31 16 10 C 0.03 0.78 4.97 -27.89 -0.14 0.64 16 11 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 12 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 15 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 C -0.15 -0.97 6.28 -25.20 -0.16 -1.12 16 20 C -0.16 -0.97 7.15 -24.72 -0.18 -1.14 16 21 C 0.04 0.33 7.67 38.21 0.29 0.62 16 22 O -0.36 -3.85 10.76 -35.23 -0.38 -4.23 16 23 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.52 6.59 -51.93 -0.34 0.18 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.09 0.95 7.68 -51.93 -0.40 0.55 16 28 H 0.42 4.38 7.03 -34.47 -0.24 4.14 16 29 H 0.13 1.68 8.14 -51.92 -0.42 1.26 16 30 H 0.13 1.77 8.14 -51.92 -0.42 1.34 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.08 0.43 7.70 -51.93 -0.40 0.03 16 37 H 0.08 0.52 7.70 -51.93 -0.40 0.12 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 346.46 15.07 5.22 5.22 Total: -1.00 -36.01 346.46 -9.24 -45.26 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.82 Total: -0.62 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: -0.29 Total: -25.07 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.68 Total: -38.99 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -2.43 Total: -41.54 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 39.69 SS G_CDS: -0.59 Total: 39.10 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.01 -9.24 -45.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156084962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.328 kcal (2) G-P(sol) polarization free energy of solvation -36.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds