Wall clock time and date at job start Tue Mar 31 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.81991 * 2 1 4 4 N 1.46505 * 109.47098 * 305.56908 * 3 2 1 5 5 S 1.65601 * 119.99899 * 164.99825 * 4 3 2 6 6 O 1.42097 * 104.27502 * 181.07130 * 5 4 3 7 7 O 1.42097 * 104.27599 * 308.92853 * 5 4 3 8 8 C 1.81399 * 104.44702 * 65.00226 * 5 4 3 9 9 C 1.52999 * 109.47091 * 179.97438 * 8 5 4 10 10 C 1.52996 * 109.47351 * 179.97438 * 9 8 5 11 11 C 1.50701 * 109.47398 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99869 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00162 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99851 * 179.97438 * 13 11 10 15 15 Si 1.86792 * 119.99903 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.47291 * 90.00052 * 15 13 11 17 17 H 1.48500 * 109.47343 * 210.00103 * 15 13 11 18 18 H 1.48502 * 109.47562 * 330.00130 * 15 13 11 19 19 C 1.54371 * 109.83438 * 120.97860 * 2 1 3 20 20 C 1.55302 * 102.25306 * 98.15980 * 19 2 1 21 21 C 1.54945 * 100.94206 * 34.13213 * 20 19 2 22 22 O 1.43234 * 109.82915 * 239.11825 * 2 1 3 23 23 H 1.09006 * 109.46810 * 179.43492 * 1 2 3 24 24 H 1.09000 * 109.47201 * 299.42904 * 1 2 3 25 25 H 1.08995 * 109.47853 * 59.43593 * 1 2 3 26 26 H 1.08998 * 109.47008 * 65.56652 * 3 2 1 27 27 H 1.08998 * 109.47335 * 185.57114 * 3 2 1 28 28 H 0.97004 * 119.99850 * 345.00162 * 4 3 2 29 29 H 1.08996 * 109.47052 * 299.99758 * 8 5 4 30 30 H 1.08999 * 109.47547 * 59.99755 * 8 5 4 31 31 H 1.09004 * 109.47406 * 300.00142 * 9 8 5 32 32 H 1.09003 * 109.47269 * 60.00002 * 9 8 5 33 33 H 1.08996 * 109.47167 * 300.00218 * 10 9 8 34 34 H 1.08999 * 109.47171 * 60.00056 * 10 9 8 35 35 H 0.97001 * 119.99799 * 179.97438 * 14 13 11 36 36 H 1.08999 * 110.84905 * 216.35021 * 19 2 1 37 37 H 1.09002 * 110.85062 * 339.76972 * 19 2 1 38 38 H 1.09004 * 111.12618 * 276.21488 * 20 19 2 39 39 H 1.09004 * 111.12525 * 152.05470 * 20 19 2 40 40 H 1.09004 * 110.31131 * 204.63979 * 21 20 19 41 41 H 1.09001 * 110.30800 * 82.47413 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4394 0.0000 4 7 1.4585 2.1713 -1.1235 5 16 1.5363 3.8249 -1.1670 6 8 0.8525 4.1766 -2.3619 7 8 1.0478 4.2322 0.1037 8 6 3.3068 4.1908 -1.3155 9 6 3.5118 5.7062 -1.3666 10 6 5.0051 6.0149 -1.4912 11 6 5.2071 7.5075 -1.5409 12 1 4.3555 8.1697 -1.4883 13 6 6.4790 8.0277 -1.6534 14 7 6.6552 9.3302 -1.6972 15 14 7.9519 6.8824 -1.7436 16 1 8.2319 6.5469 -3.1629 17 1 9.1370 7.5523 -1.1503 18 1 7.6579 5.6374 -0.9894 19 6 2.0538 -0.7474 1.2450 20 6 2.3682 -2.1574 0.6749 21 6 2.8408 -1.7974 -0.7561 22 8 2.0159 -0.6916 -1.1564 23 1 -0.3633 -1.0277 -0.0101 24 1 -0.3633 0.5049 0.8950 25 1 -0.3634 0.5225 -0.8848 26 1 1.7721 1.9253 0.9356 27 1 3.1342 1.4345 -0.0998 28 1 1.0220 1.6872 -1.8420 29 1 3.8359 3.7810 -0.4552 30 1 3.6955 3.7410 -2.2291 31 1 2.9827 6.1157 -2.2271 32 1 3.1231 6.1564 -0.4531 33 1 5.5338 5.6055 -0.6305 34 1 5.3942 5.5647 -2.4045 35 1 7.5500 9.6962 -1.7760 36 1 2.9571 -0.2744 1.6300 37 1 1.2863 -0.8002 2.0173 38 1 1.4732 -2.7790 0.6483 39 1 3.1638 -2.6417 1.2412 40 1 2.6920 -2.6430 -1.4277 41 1 3.8900 -1.5021 -0.7450 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156085081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:45 Heat of formation + Delta-G solvation = -137.308285 kcal Electronic energy + Delta-G solvation = -21781.784189 eV Core-core repulsion = 18402.284951 eV Total energy + Delta-G solvation = -3379.499238 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.28516 -36.92409 -35.81467 -35.48359 -34.79545 -32.73086 -32.20668 -31.26438 -28.36479 -27.06832 -25.49414 -23.58908 -22.23638 -20.61158 -20.43262 -19.19928 -17.61912 -16.93954 -16.76407 -16.55990 -16.12021 -15.83838 -15.27890 -14.92103 -14.25962 -14.19562 -14.13939 -13.41725 -13.24632 -12.99902 -12.84650 -12.54610 -12.31531 -12.14454 -12.11151 -12.05525 -11.89683 -11.82118 -11.56099 -11.48418 -11.14888 -11.06075 -10.97095 -10.94048 -10.08383 -9.94686 -9.89949 -9.79709 -9.35277 -9.23451 -8.58341 -6.08009 -4.07150 0.44039 2.80754 3.26959 3.34301 3.36370 3.38823 3.91642 4.02431 4.21146 4.37749 4.40722 4.43248 4.62127 4.64817 4.81978 5.00515 5.10451 5.15070 5.21422 5.23561 5.26087 5.30813 5.36139 5.39923 5.52619 5.59909 5.65154 5.72406 5.78834 5.92268 6.15891 6.28361 6.68088 6.69910 6.94146 7.13703 7.27582 7.71686 8.48312 8.96613 9.53189 11.05357 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020584 B = 0.003672 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.975735 B = 7622.865412 C = 8535.633451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.100 3.900 3 C 0.113 3.887 4 N -1.118 6.118 5 S 2.604 3.396 6 O -0.961 6.961 7 O -0.961 6.961 8 C -0.616 4.616 9 C -0.098 4.098 10 C -0.005 4.005 11 C -0.527 4.527 12 H 0.075 0.925 13 C 0.067 3.933 14 N -0.901 5.901 15 Si 0.881 3.119 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.266 1.266 19 C -0.147 4.147 20 C -0.155 4.155 21 C 0.049 3.951 22 O -0.369 6.369 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.418 0.582 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.020 0.980 34 H 0.016 0.984 35 H 0.264 0.736 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.144 -25.917 5.383 28.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.059 3.941 3 C -0.014 4.014 4 N -0.877 5.877 5 S 2.699 3.301 6 O -0.951 6.951 7 O -0.951 6.951 8 C -0.748 4.748 9 C -0.137 4.137 10 C -0.043 4.043 11 C -0.565 4.565 12 H 0.093 0.907 13 C -0.134 4.134 14 N -0.539 5.539 15 Si 0.708 3.292 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.191 1.191 19 C -0.185 4.185 20 C -0.193 4.193 21 C -0.028 4.028 22 O -0.288 6.288 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.087 0.913 28 H 0.253 0.747 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.038 0.962 34 H 0.034 0.966 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.733 -25.040 5.365 27.396 hybrid contribution 1.562 -1.044 -0.242 1.894 sum -8.171 -26.084 5.122 27.810 Atomic orbital electron populations 1.22055 0.93244 1.02439 1.03285 1.22256 0.94930 0.91108 0.85776 1.21679 0.97779 0.92005 0.89978 1.55609 1.73183 1.26401 1.32530 1.05178 0.78150 0.72456 0.74308 1.93586 1.71653 1.81515 1.48373 1.93567 1.78074 1.80642 1.42835 1.30601 1.24278 1.08648 1.11226 1.21311 1.02595 0.87021 1.02781 1.19529 0.90221 0.97924 0.96647 1.21143 0.94449 0.89997 1.50888 0.90718 1.25026 0.98952 0.94960 0.94496 1.69911 1.22467 1.11060 1.50481 0.86770 0.82391 0.81395 0.78656 1.20210 1.21269 1.19093 1.23179 1.02617 0.95249 0.97449 1.23248 1.02350 0.97215 0.96469 1.23402 0.94852 0.89371 0.95165 1.88464 1.67116 1.43601 1.29666 0.92017 0.90986 0.91431 0.89147 0.91290 0.74652 0.85642 0.85247 0.90978 0.90977 0.96216 0.96607 0.92629 0.89855 0.89355 0.90339 0.89781 0.89733 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.50 37.16 0.32 -0.89 16 2 C 0.10 0.82 0.91 -89.90 -0.08 0.74 16 3 C 0.11 1.05 5.20 -4.04 -0.02 1.03 16 4 N -1.12 -12.25 5.31 -10.61 -0.06 -12.30 16 5 S 2.60 37.50 5.46 -107.50 -0.59 36.92 16 6 O -0.96 -16.90 18.08 -57.54 -1.04 -17.94 16 7 O -0.96 -16.38 17.50 -57.54 -1.01 -17.38 16 8 C -0.62 -9.04 6.07 37.16 0.23 -8.81 16 9 C -0.10 -1.93 5.16 -26.73 -0.14 -2.06 16 10 C 0.00 -0.11 4.04 -27.88 -0.11 -0.22 16 11 C -0.53 -15.10 9.66 -34.44 -0.33 -15.43 16 12 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 14 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 15 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 19 C -0.15 -0.88 6.09 -24.79 -0.15 -1.03 16 20 C -0.16 -0.81 7.16 -24.48 -0.18 -0.98 16 21 C 0.05 0.33 7.78 38.18 0.30 0.63 16 22 O -0.37 -3.47 10.56 -35.23 -0.37 -3.84 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.59 6.87 -51.93 -0.36 0.23 16 26 H 0.09 0.81 7.69 -51.93 -0.40 0.41 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.42 4.25 7.58 -34.48 -0.26 3.99 16 29 H 0.13 1.57 8.14 -51.93 -0.42 1.14 16 30 H 0.13 1.68 8.14 -51.92 -0.42 1.26 16 31 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 34 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.08 0.45 7.85 -51.93 -0.41 0.04 16 37 H 0.09 0.44 7.82 -51.93 -0.41 0.03 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 343.57 15.07 5.18 5.18 Total: -1.00 -36.02 343.57 -8.89 -44.90 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.83 Total: -0.14 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: -0.27 Total: -25.17 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.72 Total: -39.38 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -2.42 Total: -39.16 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 16 Polarization: 37.50 SS G_CDS: -0.59 Total: 36.92 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.02 -8.89 -44.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156085081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.407 kcal (2) G-P(sol) polarization free energy of solvation -36.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds