Wall clock time and date at job start Tue Mar 31 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.81991 * 2 1 4 4 N 1.46505 * 109.47098 * 305.56908 * 3 2 1 5 5 S 1.65601 * 119.99899 * 164.99825 * 4 3 2 6 6 O 1.42097 * 104.27502 * 181.07130 * 5 4 3 7 7 O 1.42097 * 104.27599 * 308.92853 * 5 4 3 8 8 C 1.81399 * 104.44702 * 65.00226 * 5 4 3 9 9 C 1.52999 * 109.47091 * 179.97438 * 8 5 4 10 10 C 1.52996 * 109.47351 * 179.97438 * 9 8 5 11 11 C 1.50701 * 109.47398 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99869 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00162 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99851 * 179.97438 * 13 11 10 15 15 Si 1.86792 * 119.99903 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.47291 * 90.00052 * 15 13 11 17 17 H 1.48500 * 109.47343 * 210.00103 * 15 13 11 18 18 H 1.48502 * 109.47562 * 330.00130 * 15 13 11 19 19 C 1.54371 * 109.83438 * 120.97860 * 2 1 3 20 20 C 1.55302 * 102.25306 * 98.15980 * 19 2 1 21 21 C 1.54945 * 100.94206 * 34.13213 * 20 19 2 22 22 O 1.43234 * 109.82915 * 239.11825 * 2 1 3 23 23 H 1.09006 * 109.46810 * 179.43492 * 1 2 3 24 24 H 1.09000 * 109.47201 * 299.42904 * 1 2 3 25 25 H 1.08995 * 109.47853 * 59.43593 * 1 2 3 26 26 H 1.08998 * 109.47008 * 65.56652 * 3 2 1 27 27 H 1.08998 * 109.47335 * 185.57114 * 3 2 1 28 28 H 0.97004 * 119.99850 * 345.00162 * 4 3 2 29 29 H 1.08996 * 109.47052 * 299.99758 * 8 5 4 30 30 H 1.08999 * 109.47547 * 59.99755 * 8 5 4 31 31 H 1.09004 * 109.47406 * 300.00142 * 9 8 5 32 32 H 1.09003 * 109.47269 * 60.00002 * 9 8 5 33 33 H 1.08996 * 109.47167 * 300.00218 * 10 9 8 34 34 H 1.08999 * 109.47171 * 60.00056 * 10 9 8 35 35 H 0.97001 * 119.99799 * 179.97438 * 14 13 11 36 36 H 1.08999 * 110.84905 * 216.35021 * 19 2 1 37 37 H 1.09002 * 110.85062 * 339.76972 * 19 2 1 38 38 H 1.09004 * 111.12618 * 276.21488 * 20 19 2 39 39 H 1.09004 * 111.12525 * 152.05470 * 20 19 2 40 40 H 1.09004 * 110.31131 * 204.63979 * 21 20 19 41 41 H 1.09001 * 110.30800 * 82.47413 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4394 0.0000 4 7 1.4585 2.1713 -1.1235 5 16 1.5363 3.8249 -1.1670 6 8 0.8525 4.1766 -2.3619 7 8 1.0478 4.2322 0.1037 8 6 3.3068 4.1908 -1.3155 9 6 3.5118 5.7062 -1.3666 10 6 5.0051 6.0149 -1.4912 11 6 5.2071 7.5075 -1.5409 12 1 4.3555 8.1697 -1.4883 13 6 6.4790 8.0277 -1.6534 14 7 6.6552 9.3302 -1.6972 15 14 7.9519 6.8824 -1.7436 16 1 8.2319 6.5469 -3.1629 17 1 9.1370 7.5523 -1.1503 18 1 7.6579 5.6374 -0.9894 19 6 2.0538 -0.7474 1.2450 20 6 2.3682 -2.1574 0.6749 21 6 2.8408 -1.7974 -0.7561 22 8 2.0159 -0.6916 -1.1564 23 1 -0.3633 -1.0277 -0.0101 24 1 -0.3633 0.5049 0.8950 25 1 -0.3634 0.5225 -0.8848 26 1 1.7721 1.9253 0.9356 27 1 3.1342 1.4345 -0.0998 28 1 1.0220 1.6872 -1.8420 29 1 3.8359 3.7810 -0.4552 30 1 3.6955 3.7410 -2.2291 31 1 2.9827 6.1157 -2.2271 32 1 3.1231 6.1564 -0.4531 33 1 5.5338 5.6055 -0.6305 34 1 5.3942 5.5647 -2.4045 35 1 7.5500 9.6962 -1.7760 36 1 2.9571 -0.2744 1.6300 37 1 1.2863 -0.8002 2.0173 38 1 1.4732 -2.7790 0.6483 39 1 3.1638 -2.6417 1.2412 40 1 2.6920 -2.6430 -1.4277 41 1 3.8900 -1.5021 -0.7450 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156085081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:44 Heat of formation + Delta-G solvation = -165.140980 kcal Electronic energy + Delta-G solvation = -21782.991105 eV Core-core repulsion = 18402.284951 eV Total energy + Delta-G solvation = -3380.706154 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.83856 -38.19313 -37.06410 -36.51122 -36.28843 -34.25483 -33.27089 -31.86382 -30.15926 -27.68614 -26.09352 -25.38981 -22.70027 -22.23816 -21.15080 -20.31234 -18.98185 -18.64214 -17.67440 -17.29122 -17.17414 -16.67899 -16.37937 -16.17871 -15.79744 -15.33728 -14.89743 -14.73863 -14.15010 -14.02365 -13.82236 -13.67199 -13.51535 -13.23950 -13.21634 -13.14024 -13.09004 -12.93234 -12.70258 -12.59272 -12.55713 -11.94408 -11.84723 -11.67920 -11.64979 -11.57833 -11.42055 -11.30363 -10.78114 -10.54250 -10.31394 -8.30415 -6.36446 -0.73077 1.36565 1.38990 1.50693 1.78727 2.36054 2.75893 2.85299 3.04710 3.22527 3.52556 3.70381 3.72980 3.90072 3.94184 4.07865 4.17828 4.33392 4.40022 4.44492 4.60438 4.63760 4.73022 4.77112 4.84932 4.88275 4.94549 4.97035 4.99009 5.07353 5.12052 5.23676 5.33321 5.36035 5.45234 5.61983 6.05904 6.19222 6.24817 6.71815 7.28224 8.86685 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020584 B = 0.003672 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.975735 B = 7622.865412 C = 8535.633451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.098 3.902 3 C 0.099 3.901 4 N -1.105 6.105 5 S 2.626 3.374 6 O -0.997 6.997 7 O -0.989 6.989 8 C -0.610 4.610 9 C -0.104 4.104 10 C -0.005 4.005 11 C -0.545 4.545 12 H 0.030 0.970 13 C 0.000 4.000 14 N -0.953 5.953 15 Si 0.956 3.044 16 H -0.266 1.266 17 H -0.284 1.284 18 H -0.238 1.238 19 C -0.146 4.146 20 C -0.149 4.149 21 C 0.039 3.961 22 O -0.391 6.391 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.424 0.576 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.034 0.966 34 H 0.029 0.971 35 H 0.267 0.733 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.878 -29.330 6.075 30.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.057 3.943 3 C -0.027 4.027 4 N -0.867 5.867 5 S 2.722 3.278 6 O -0.987 6.987 7 O -0.979 6.979 8 C -0.741 4.741 9 C -0.143 4.143 10 C -0.044 4.044 11 C -0.583 4.583 12 H 0.048 0.952 13 C -0.196 4.196 14 N -0.593 5.593 15 Si 0.778 3.222 16 H -0.191 1.191 17 H -0.210 1.210 18 H -0.161 1.161 19 C -0.184 4.184 20 C -0.186 4.186 21 C -0.037 4.037 22 O -0.311 6.311 23 H 0.088 0.912 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.112 0.888 27 H 0.104 0.896 28 H 0.260 0.740 29 H 0.173 0.827 30 H 0.171 0.829 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.494 -28.469 6.057 30.320 hybrid contribution 1.094 0.048 -0.455 1.186 sum -7.401 -28.421 5.602 29.898 Atomic orbital electron populations 1.22091 0.93486 1.02875 1.02884 1.22307 0.94835 0.90518 0.86644 1.22013 0.98798 0.92606 0.89291 1.55245 1.73196 1.24883 1.33342 1.04277 0.77674 0.73014 0.72868 1.93535 1.72720 1.82744 1.49710 1.93530 1.78711 1.81742 1.43942 1.30506 1.24854 1.04886 1.13889 1.21186 1.00103 0.90895 1.02163 1.19505 0.92971 0.94227 0.97660 1.21566 0.93386 0.92687 1.50643 0.95209 1.26122 1.02800 0.96795 0.93903 1.70085 1.23531 1.13620 1.52071 0.85580 0.77376 0.79719 0.79502 1.19073 1.21015 1.16096 1.23220 1.03218 0.95335 0.96654 1.23238 1.02979 0.96899 0.95488 1.23581 0.94753 0.88976 0.96348 1.88441 1.67580 1.44445 1.30618 0.91186 0.90564 0.92689 0.88764 0.89630 0.73979 0.82702 0.82949 0.92040 0.91683 0.94800 0.95240 0.92405 0.89067 0.88347 0.90031 0.88225 0.89142 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 8.50 71.98 0.61 -1.60 16 2 C 0.10 1.38 0.91 -10.33 -0.01 1.37 16 3 C 0.10 1.60 5.20 86.38 0.45 2.05 16 4 N -1.10 -22.21 5.31 -187.48 -1.00 -23.21 16 5 S 2.63 72.66 5.46 -56.49 -0.31 72.35 16 6 O -1.00 -34.81 18.08 -127.65 -2.31 -37.11 16 7 O -0.99 -32.99 17.50 -127.65 -2.23 -35.23 16 8 C -0.61 -16.32 6.07 71.98 0.44 -15.88 16 9 C -0.10 -4.03 5.16 30.59 0.16 -3.87 16 10 C -0.01 -0.23 4.04 29.85 0.12 -0.11 16 11 C -0.54 -31.83 9.66 25.60 0.25 -31.58 16 12 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 13 C 0.00 0.03 5.47 84.66 0.46 0.49 16 14 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 15 Si 0.96 43.34 27.47 68.60 1.88 45.23 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 18 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 19 C -0.15 -1.32 6.09 31.85 0.19 -1.12 16 20 C -0.15 -1.11 7.16 32.05 0.23 -0.88 16 21 C 0.04 0.44 7.78 72.65 0.56 1.00 16 22 O -0.39 -6.52 10.56 -148.98 -1.57 -8.09 16 23 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 24 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.05 0.90 6.87 -2.39 -0.02 0.89 16 26 H 0.09 1.46 7.69 -2.39 -0.02 1.44 16 27 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.42 8.01 7.58 -96.74 -0.73 7.28 16 29 H 0.15 3.24 8.14 -2.39 -0.02 3.22 16 30 H 0.15 3.42 8.14 -2.39 -0.02 3.40 16 31 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 32 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.03 1.45 7.20 -2.39 -0.02 1.43 16 34 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 35 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.09 0.68 7.85 -2.39 -0.02 0.67 16 37 H 0.10 0.69 7.82 -2.39 -0.02 0.67 16 38 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 39 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 40 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -79.22 343.57 -1.55 -80.77 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.22 Total: 15.59 kcal Atomic # 6 Polarization: -53.62 SS G_CDS: 3.47 Total: -50.15 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -0.70 Total: -83.36 kcal Atomic # 8 Polarization: -74.32 SS G_CDS: -6.11 Total: -80.43 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.23 kcal Atomic # 16 Polarization: 72.66 SS G_CDS: -0.31 Total: 72.35 kcal Total: -79.22 -1.55 -80.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156085081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.367 kcal (2) G-P(sol) polarization free energy of solvation -79.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds