Wall clock time and date at job start Tue Mar 31 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.48343 * 2 1 4 4 C 1.53097 * 109.48192 * 120.02286 * 2 1 3 5 5 C 1.53183 * 109.16114 * 62.37217 * 4 2 1 6 6 H 1.09001 * 109.54271 * 297.02503 * 5 4 2 7 7 N 1.46502 * 109.54267 * 176.84981 * 5 4 2 8 8 S 1.65599 * 120.00060 * 145.00247 * 7 5 4 9 9 O 1.42096 * 104.27488 * 181.07200 * 8 7 5 10 10 O 1.42103 * 104.27636 * 308.92600 * 8 7 5 11 11 C 1.81394 * 104.45083 * 64.99772 * 8 7 5 12 12 C 1.52996 * 109.47186 * 179.97438 * 11 8 7 13 13 C 1.50698 * 109.47183 * 179.97438 * 12 11 8 14 14 H 1.07995 * 120.00267 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99972 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99833 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 119.99973 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47210 * 90.00018 * 17 15 13 19 19 H 1.48504 * 109.47089 * 209.99657 * 17 15 13 20 20 H 1.48497 * 109.47553 * 330.00047 * 17 15 13 21 21 C 1.53181 * 109.03693 * 56.98292 * 5 4 2 22 22 C 1.53095 * 109.15977 * 303.01915 * 21 5 4 23 23 O 1.42904 * 109.48222 * 239.97364 * 2 1 3 24 24 H 1.09002 * 109.47153 * 59.99885 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00076 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47172 * 60.00137 * 3 2 1 28 28 H 1.09000 * 109.47351 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47042 * 300.00176 * 3 2 1 30 30 H 1.08997 * 109.52633 * 182.27657 * 4 2 1 31 31 H 1.08992 * 109.52166 * 302.40589 * 4 2 1 32 32 H 0.97004 * 119.99786 * 325.00058 * 7 5 4 33 33 H 1.09004 * 109.47368 * 300.00271 * 11 8 7 34 34 H 1.09005 * 109.47284 * 59.99699 * 11 8 7 35 35 H 1.08994 * 109.47133 * 300.00388 * 12 11 8 36 36 H 1.09007 * 109.46907 * 60.00130 * 12 11 8 37 37 H 0.97000 * 120.00118 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.51923 * 62.92148 * 21 5 4 39 39 H 1.08997 * 109.52395 * 183.11485 * 21 5 4 40 40 H 1.09003 * 109.47929 * 177.59032 * 22 21 5 41 41 H 1.09000 * 109.48035 * 297.62450 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0406 -0.7222 1.2497 5 6 1.5757 -2.1813 1.2124 6 1 0.4867 -2.2179 1.2427 7 7 2.1224 -2.8994 2.3663 8 16 1.2322 -4.0876 3.0999 9 8 2.0542 -4.5305 4.1710 10 8 -0.0281 -3.4794 3.3466 11 6 1.0783 -5.3819 1.8383 12 6 0.2663 -6.5497 2.4022 13 6 0.1379 -7.6247 1.3540 14 1 0.5905 -7.4889 0.3829 15 6 -0.5575 -8.7818 1.6347 16 7 -0.6700 -9.7197 0.7197 17 14 -1.3409 -9.0164 3.3141 18 1 -2.7269 -8.4837 3.2926 19 1 -1.3719 -10.4631 3.6481 20 1 -0.5470 -8.2892 4.3368 21 6 2.0764 -2.8323 -0.0806 22 6 1.5645 -2.0286 -1.2788 23 8 2.0066 -0.6741 -1.1664 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6771 1.9563 0.8900 28 1 3.1303 1.4422 -0.0005 29 1 1.6770 1.9563 -0.8900 30 1 3.1298 -0.6874 1.2710 31 1 1.6430 -0.2349 2.1399 32 1 3.0059 -2.6789 2.7007 33 1 0.5724 -4.9768 0.9619 34 1 2.0705 -5.7331 1.5550 35 1 0.7726 -6.9546 3.2784 36 1 -0.7260 -6.1988 2.6858 37 1 -1.1588 -10.5339 0.9173 38 1 3.1664 -2.8401 -0.0861 39 1 1.7036 -3.8547 -0.1417 40 1 1.9530 -2.4624 -2.2002 41 1 0.4749 -2.0551 -1.2955 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156294625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:42 Heat of formation + Delta-G solvation = -136.759879 kcal Electronic energy + Delta-G solvation = -22548.568330 eV Core-core repulsion = 19169.092873 eV Total energy + Delta-G solvation = -3379.475457 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.29915 -36.78439 -35.86959 -35.57813 -34.02902 -33.79446 -31.55250 -30.98624 -28.06753 -27.57333 -26.01364 -24.02132 -22.07043 -21.28449 -19.72457 -18.94692 -17.72992 -17.05543 -16.66943 -16.35505 -15.61887 -15.49063 -14.97123 -14.88585 -14.47161 -14.30771 -14.00515 -13.62714 -13.27494 -12.84654 -12.70675 -12.40785 -12.25828 -12.03914 -11.83034 -11.81867 -11.78692 -11.73483 -11.53530 -11.38835 -11.30012 -11.27020 -11.17524 -10.47748 -10.33576 -10.14139 -9.82392 -9.68256 -9.51284 -9.22412 -8.68835 -6.19204 -4.20638 0.62182 2.94000 3.24489 3.32098 3.36196 3.54748 4.07402 4.33516 4.33799 4.47049 4.56192 4.62304 4.76384 4.79946 4.93087 5.07765 5.12575 5.19747 5.31489 5.36073 5.39961 5.45725 5.50716 5.54321 5.57571 5.64413 5.70622 5.81237 5.89738 5.94460 6.03460 6.15675 6.26149 6.77783 6.88967 6.99931 7.07913 7.51793 8.33494 8.81560 9.40485 10.93117 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023869 B = 0.004373 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.790309 B = 6401.354554 C = 7001.680132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.113 3.887 3 C -0.137 4.137 4 C -0.144 4.144 5 C 0.145 3.855 6 H 0.096 0.904 7 N -1.119 6.119 8 S 2.588 3.412 9 O -0.967 6.967 10 O -0.966 6.966 11 C -0.584 4.584 12 C -0.007 4.007 13 C -0.520 4.520 14 H 0.078 0.922 15 C 0.072 3.928 16 N -0.895 5.895 17 Si 0.869 3.131 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.262 1.262 21 C -0.184 4.184 22 C 0.059 3.941 23 O -0.373 6.373 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.413 0.587 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.033 0.967 36 H 0.028 0.972 37 H 0.267 0.733 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.631 20.346 -2.193 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.073 3.927 3 C -0.194 4.194 4 C -0.183 4.183 5 C 0.038 3.962 6 H 0.114 0.886 7 N -0.875 5.875 8 S 2.685 3.315 9 O -0.957 6.957 10 O -0.956 6.956 11 C -0.717 4.717 12 C -0.046 4.046 13 C -0.559 4.559 14 H 0.096 0.904 15 C -0.131 4.131 16 N -0.533 5.533 17 Si 0.695 3.305 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.186 1.186 21 C -0.224 4.224 22 C -0.018 4.018 23 O -0.292 6.292 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.247 0.753 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.117 0.883 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.157 20.278 -1.501 20.977 hybrid contribution -0.049 -0.676 0.453 0.815 sum 5.109 19.603 -1.048 20.284 Atomic orbital electron populations 1.22526 0.95436 1.03252 1.03091 1.21469 0.93362 0.92875 0.85029 1.21747 1.01897 0.93161 1.02571 1.22468 1.02353 0.94610 0.98891 1.20889 0.98842 0.91841 0.84671 0.88596 1.55810 1.32396 1.54188 1.45095 1.05644 0.73977 0.75491 0.76371 1.93562 1.68287 1.82147 1.51709 1.93548 1.43152 1.74670 1.84257 1.30405 1.10488 1.14671 1.16169 1.19411 0.94431 0.92552 0.98215 1.20834 1.35365 0.99967 0.99708 0.90403 1.24980 0.95514 0.95602 0.96962 1.69877 1.41693 1.07853 1.33862 0.86932 0.80598 0.77948 0.85015 1.19660 1.20733 1.18636 1.22937 1.03305 1.01094 0.95026 1.22596 0.99281 0.81694 0.98205 1.87971 1.73683 1.24695 1.42900 0.91547 0.91138 0.91486 0.91058 0.91804 0.91690 0.90347 0.90029 0.75334 0.85731 0.85371 0.94922 0.95385 0.92357 0.89995 0.89473 0.88258 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.64 7.93 37.16 0.29 -1.34 16 2 C 0.11 1.03 1.11 -90.57 -0.10 0.93 16 3 C -0.14 -1.02 8.85 37.16 0.33 -0.69 16 4 C -0.14 -1.35 4.46 -26.59 -0.12 -1.47 16 5 C 0.15 1.61 2.47 -67.74 -0.17 1.44 16 6 H 0.10 1.13 5.96 -51.93 -0.31 0.82 16 7 N -1.12 -13.50 5.37 -4.73 -0.03 -13.52 16 8 S 2.59 42.97 5.44 -107.50 -0.58 42.38 16 9 O -0.97 -18.82 18.08 -57.54 -1.04 -19.86 16 10 O -0.97 -18.54 17.39 -57.54 -1.00 -19.54 16 11 C -0.58 -10.36 5.26 37.16 0.20 -10.17 16 12 C -0.01 -0.16 4.05 -27.89 -0.11 -0.27 16 13 C -0.52 -14.27 9.66 -34.44 -0.33 -14.60 16 14 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 15 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 16 N -0.90 -26.78 13.96 55.43 0.77 -26.00 16 17 Si 0.87 21.31 27.47 -169.99 -4.67 16.64 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 21 C -0.18 -1.90 5.70 -26.59 -0.15 -2.05 16 22 C 0.06 0.58 6.52 37.21 0.24 0.82 16 23 O -0.37 -3.96 10.24 -35.23 -0.36 -4.32 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.63 4.98 -51.93 -0.26 0.37 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.41 4.14 8.80 -34.47 -0.30 3.83 16 33 H 0.12 1.97 6.77 -51.92 -0.35 1.62 16 34 H 0.13 2.06 8.14 -51.92 -0.42 1.64 16 35 H 0.03 0.77 7.20 -51.93 -0.37 0.39 16 36 H 0.03 0.64 7.57 -51.92 -0.39 0.25 16 37 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 0.93 5.91 -51.93 -0.31 0.62 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.55 6.34 -51.93 -0.33 0.22 16 LS Contribution 331.42 15.07 4.99 4.99 Total: -1.00 -34.19 331.42 -8.37 -42.56 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.44 Total: 2.11 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: -0.02 Total: -25.44 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.75 Total: -39.53 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -2.40 Total: -43.72 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Atomic # 16 Polarization: 42.97 SS G_CDS: -0.58 Total: 42.38 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.19 -8.37 -42.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156294625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.201 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds