Wall clock time and date at job start Tue Mar 31 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.48343 * 2 1 4 4 C 1.53097 * 109.48192 * 120.02286 * 2 1 3 5 5 C 1.53183 * 109.16114 * 62.37217 * 4 2 1 6 6 H 1.09001 * 109.54271 * 297.02503 * 5 4 2 7 7 N 1.46502 * 109.54267 * 176.84981 * 5 4 2 8 8 S 1.65599 * 120.00060 * 145.00247 * 7 5 4 9 9 O 1.42096 * 104.27488 * 181.07200 * 8 7 5 10 10 O 1.42103 * 104.27636 * 308.92600 * 8 7 5 11 11 C 1.81394 * 104.45083 * 64.99772 * 8 7 5 12 12 C 1.52996 * 109.47186 * 179.97438 * 11 8 7 13 13 C 1.50698 * 109.47183 * 179.97438 * 12 11 8 14 14 H 1.07995 * 120.00267 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99972 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99833 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 119.99973 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47210 * 90.00018 * 17 15 13 19 19 H 1.48504 * 109.47089 * 209.99657 * 17 15 13 20 20 H 1.48497 * 109.47553 * 330.00047 * 17 15 13 21 21 C 1.53181 * 109.03693 * 56.98292 * 5 4 2 22 22 C 1.53095 * 109.15977 * 303.01915 * 21 5 4 23 23 O 1.42904 * 109.48222 * 239.97364 * 2 1 3 24 24 H 1.09002 * 109.47153 * 59.99885 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00076 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47172 * 60.00137 * 3 2 1 28 28 H 1.09000 * 109.47351 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47042 * 300.00176 * 3 2 1 30 30 H 1.08997 * 109.52633 * 182.27657 * 4 2 1 31 31 H 1.08992 * 109.52166 * 302.40589 * 4 2 1 32 32 H 0.97004 * 119.99786 * 325.00058 * 7 5 4 33 33 H 1.09004 * 109.47368 * 300.00271 * 11 8 7 34 34 H 1.09005 * 109.47284 * 59.99699 * 11 8 7 35 35 H 1.08994 * 109.47133 * 300.00388 * 12 11 8 36 36 H 1.09007 * 109.46907 * 60.00130 * 12 11 8 37 37 H 0.97000 * 120.00118 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.51923 * 62.92148 * 21 5 4 39 39 H 1.08997 * 109.52395 * 183.11485 * 21 5 4 40 40 H 1.09003 * 109.47929 * 177.59032 * 22 21 5 41 41 H 1.09000 * 109.48035 * 297.62450 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0406 -0.7222 1.2497 5 6 1.5757 -2.1813 1.2124 6 1 0.4867 -2.2179 1.2427 7 7 2.1224 -2.8994 2.3663 8 16 1.2322 -4.0876 3.0999 9 8 2.0542 -4.5305 4.1710 10 8 -0.0281 -3.4794 3.3466 11 6 1.0783 -5.3819 1.8383 12 6 0.2663 -6.5497 2.4022 13 6 0.1379 -7.6247 1.3540 14 1 0.5905 -7.4889 0.3829 15 6 -0.5575 -8.7818 1.6347 16 7 -0.6700 -9.7197 0.7197 17 14 -1.3409 -9.0164 3.3141 18 1 -2.7269 -8.4837 3.2926 19 1 -1.3719 -10.4631 3.6481 20 1 -0.5470 -8.2892 4.3368 21 6 2.0764 -2.8323 -0.0806 22 6 1.5645 -2.0286 -1.2788 23 8 2.0066 -0.6741 -1.1664 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6771 1.9563 0.8900 28 1 3.1303 1.4422 -0.0005 29 1 1.6770 1.9563 -0.8900 30 1 3.1298 -0.6874 1.2710 31 1 1.6430 -0.2349 2.1399 32 1 3.0059 -2.6789 2.7007 33 1 0.5724 -4.9768 0.9619 34 1 2.0705 -5.7331 1.5550 35 1 0.7726 -6.9546 3.2784 36 1 -0.7260 -6.1988 2.6858 37 1 -1.1588 -10.5339 0.9173 38 1 3.1664 -2.8401 -0.0861 39 1 1.7036 -3.8547 -0.1417 40 1 1.9530 -2.4624 -2.2002 41 1 0.4749 -2.0551 -1.2955 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156294625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:42 Heat of formation + Delta-G solvation = -162.967105 kcal Electronic energy + Delta-G solvation = -22549.704761 eV Core-core repulsion = 19169.092873 eV Total energy + Delta-G solvation = -3380.611888 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.06308 -38.21674 -37.09773 -36.74874 -35.91182 -34.52208 -33.49244 -31.92224 -28.83884 -28.22353 -27.84321 -24.84257 -23.28645 -22.71707 -20.69125 -20.06928 -19.39451 -18.53154 -17.74811 -17.22898 -16.93900 -16.64928 -16.38413 -15.95818 -15.71002 -15.31681 -15.23153 -14.82697 -14.75879 -14.01272 -13.82279 -13.41382 -13.27447 -13.23071 -13.16223 -13.11753 -13.00760 -12.93614 -12.74127 -12.56591 -12.40619 -12.23598 -12.14111 -12.02414 -11.96375 -11.71584 -11.28481 -11.00599 -10.84259 -10.45843 -10.40902 -8.36423 -6.41919 -0.74081 1.31669 1.33986 1.43587 1.73747 2.29418 2.71925 2.84567 2.97765 3.20048 3.57778 3.75959 3.79840 3.88380 3.98744 4.04221 4.07711 4.17072 4.31219 4.44277 4.53913 4.63170 4.70224 4.76147 4.84839 4.88763 4.92742 5.03203 5.04110 5.07220 5.12163 5.17376 5.24275 5.36989 5.42032 5.47275 6.08878 6.16882 6.35248 6.64229 7.22540 8.79002 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023869 B = 0.004373 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.790309 B = 6401.354554 C = 7001.680132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.108 3.892 3 C -0.135 4.135 4 C -0.141 4.141 5 C 0.137 3.863 6 H 0.089 0.911 7 N -1.100 6.100 8 S 2.619 3.381 9 O -0.993 6.993 10 O -0.990 6.990 11 C -0.590 4.590 12 C -0.017 4.017 13 C -0.525 4.525 14 H 0.051 0.949 15 C 0.015 3.985 16 N -0.939 5.939 17 Si 0.923 3.077 18 H -0.261 1.261 19 H -0.275 1.275 20 H -0.250 1.250 21 C -0.184 4.184 22 C 0.057 3.943 23 O -0.385 6.385 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.426 0.574 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.031 0.969 36 H 0.031 0.969 37 H 0.269 0.731 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.007 22.140 -1.390 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.068 3.932 3 C -0.192 4.192 4 C -0.180 4.180 5 C 0.030 3.970 6 H 0.107 0.893 7 N -0.860 5.860 8 S 2.715 3.285 9 O -0.984 6.984 10 O -0.980 6.980 11 C -0.721 4.721 12 C -0.056 4.056 13 C -0.564 4.564 14 H 0.069 0.931 15 C -0.184 4.184 16 N -0.579 5.579 17 Si 0.746 3.254 18 H -0.185 1.185 19 H -0.200 1.200 20 H -0.174 1.174 21 C -0.223 4.223 22 C -0.020 4.020 23 O -0.304 6.304 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.263 0.737 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.126 0.874 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.545 22.073 -0.697 22.769 hybrid contribution -0.114 -1.156 0.098 1.166 sum 5.430 20.917 -0.598 21.619 Atomic orbital electron populations 1.22553 0.95386 1.02850 1.03731 1.21629 0.93521 0.93626 0.84411 1.21764 1.01988 0.92050 1.03389 1.22477 1.03001 0.93158 0.99386 1.21096 0.98630 0.92989 0.84273 0.89259 1.55363 1.32743 1.52610 1.45328 1.04505 0.73380 0.75213 0.75437 1.93522 1.68836 1.82925 1.53088 1.93519 1.44848 1.75016 1.84567 1.30412 1.10629 1.13695 1.17396 1.19372 0.95655 0.93418 0.97154 1.21163 1.34333 1.01179 0.99770 0.93052 1.25846 0.96353 0.95511 1.00690 1.70003 1.43203 1.08663 1.36051 0.86055 0.80222 0.78382 0.80760 1.18517 1.20016 1.17374 1.22931 1.03760 1.00768 0.94875 1.22659 0.99482 0.81550 0.98347 1.87965 1.73929 1.24907 1.43609 0.91160 0.90310 0.92406 0.89585 0.91673 0.91586 0.89381 0.89317 0.73707 0.84134 0.83949 0.95047 0.95045 0.92149 0.89259 0.90041 0.87358 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.99 7.93 71.98 0.57 -2.42 16 2 C 0.11 1.75 1.11 -10.76 -0.01 1.74 16 3 C -0.13 -1.68 8.85 71.98 0.64 -1.05 16 4 C -0.14 -2.29 4.46 30.69 0.14 -2.16 16 5 C 0.14 2.76 2.47 45.11 0.11 2.87 16 6 H 0.09 1.96 5.96 -2.39 -0.01 1.95 16 7 N -1.10 -24.16 5.37 -168.87 -0.91 -25.07 16 8 S 2.62 82.75 5.44 -56.49 -0.31 82.45 16 9 O -0.99 -37.09 18.08 -127.65 -2.31 -39.40 16 10 O -0.99 -36.46 17.39 -127.65 -2.22 -38.68 16 11 C -0.59 -20.30 5.26 71.98 0.38 -19.92 16 12 C -0.02 -0.78 4.05 29.85 0.12 -0.66 16 13 C -0.53 -29.14 9.66 25.60 0.25 -28.89 16 14 H 0.05 3.03 7.99 -2.91 -0.02 3.00 16 15 C 0.01 0.84 5.47 84.66 0.46 1.30 16 16 N -0.94 -57.19 13.96 21.45 0.30 -56.89 16 17 Si 0.92 43.42 27.47 68.60 1.88 45.31 16 18 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.25 -11.19 6.54 99.48 0.65 -10.53 16 21 C -0.18 -3.48 5.70 30.69 0.17 -3.30 16 22 C 0.06 1.03 6.52 72.01 0.47 1.50 16 23 O -0.38 -7.47 10.24 -148.98 -1.53 -8.99 16 24 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.06 1.02 4.98 -2.38 -0.01 1.01 16 27 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.43 7.42 8.80 -96.74 -0.85 6.57 16 33 H 0.14 4.31 6.77 -2.39 -0.02 4.30 16 34 H 0.14 4.43 8.14 -2.39 -0.02 4.41 16 35 H 0.03 1.44 7.20 -2.39 -0.02 1.42 16 36 H 0.03 1.41 7.57 -2.38 -0.02 1.39 16 37 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.08 1.63 5.91 -2.39 -0.01 1.61 16 40 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.06 1.06 6.34 -2.39 -0.02 1.04 16 Total: -1.00 -72.47 331.42 -1.67 -74.14 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.12 Total: 18.12 kcal Atomic # 6 Polarization: -54.28 SS G_CDS: 3.30 Total: -50.98 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -0.61 Total: -81.96 kcal Atomic # 8 Polarization: -81.02 SS G_CDS: -6.05 Total: -87.07 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.88 Total: 45.31 kcal Atomic # 16 Polarization: 82.75 SS G_CDS: -0.31 Total: 82.45 kcal Total: -72.47 -1.67 -74.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156294625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.830 kcal (2) G-P(sol) polarization free energy of solvation -72.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds