Wall clock time and date at job start Tue Mar 31 2020 07:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46873 * 2 1 4 4 H 1.08997 * 109.47061 * 305.47200 * 3 2 1 5 5 N 1.46502 * 109.47148 * 65.47626 * 3 2 1 6 6 S 1.65600 * 119.99955 * 237.29597 * 5 3 2 7 7 O 1.42099 * 104.27636 * 309.27344 * 6 5 3 8 8 O 1.42101 * 104.27815 * 181.41358 * 6 5 3 9 9 C 1.81404 * 104.44705 * 65.34233 * 6 5 3 10 10 C 1.52999 * 109.46813 * 180.54918 * 9 6 5 11 11 C 1.50704 * 109.47172 * 179.97438 * 10 9 6 12 12 H 1.08003 * 119.99381 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00232 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99714 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00034 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47357 * 59.99717 * 15 13 11 17 17 H 1.48500 * 109.47171 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46773 * 299.99697 * 15 13 11 19 19 C 1.53000 * 109.46777 * 185.47607 * 3 2 1 20 20 H 1.08996 * 110.33214 * 302.24725 * 19 3 2 21 21 C 1.54486 * 110.36878 * 179.97438 * 19 3 2 22 22 C 1.54513 * 104.06069 * 217.18849 * 21 19 3 23 23 C 1.54480 * 104.06271 * 0.02562 * 22 21 19 24 24 O 1.44421 * 104.80514 * 23.97692 * 23 22 21 25 25 H 1.09000 * 109.46895 * 55.65886 * 1 2 3 26 26 H 1.09006 * 109.47046 * 175.65271 * 1 2 3 27 27 H 1.08992 * 109.47510 * 295.65774 * 1 2 3 28 28 H 1.08996 * 109.47625 * 240.00114 * 2 1 3 29 29 H 1.09007 * 109.46852 * 119.99562 * 2 1 3 30 30 H 0.96998 * 119.99779 * 57.29933 * 5 3 2 31 31 H 1.08991 * 109.47225 * 60.54734 * 9 6 5 32 32 H 1.08995 * 109.46790 * 300.54516 * 9 6 5 33 33 H 1.09004 * 109.47000 * 299.99965 * 10 9 6 34 34 H 1.09000 * 109.47623 * 60.00045 * 10 9 6 35 35 H 0.96999 * 120.00076 * 179.97438 * 14 13 11 36 36 H 1.09000 * 110.51080 * 335.83284 * 21 19 3 37 37 H 1.09003 * 110.50816 * 98.41249 * 21 19 3 38 38 H 1.08998 * 110.50615 * 118.64535 * 22 21 19 39 39 H 1.08995 * 110.50997 * 241.21927 * 22 21 19 40 40 H 1.08994 * 110.36995 * 142.80724 * 23 22 21 41 41 H 1.08997 * 110.37168 * 265.14518 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5988 1.9838 -0.8369 5 7 1.6622 2.0941 1.2566 6 16 0.7581 3.4812 1.2309 7 8 1.4445 4.3301 0.3213 8 8 0.6192 3.8345 2.6003 9 6 -0.8391 2.9678 0.5409 10 6 -1.7694 4.1792 0.4524 11 6 -3.0961 3.7529 -0.1215 12 1 -3.2591 2.7211 -0.3960 13 6 -4.1017 4.6799 -0.2960 14 7 -3.9029 5.9363 0.0380 15 14 -5.7463 4.1512 -1.0066 16 1 -6.3567 3.1208 -0.1287 17 1 -6.6493 5.3270 -1.0926 18 1 -5.5401 3.5858 -2.3642 19 6 3.5637 1.4447 -0.1377 20 1 4.0179 0.8727 0.6714 21 6 4.1013 2.8930 -0.1406 22 6 5.2647 2.8596 -1.1569 23 6 5.2919 1.3952 -1.6482 24 8 3.9531 0.9042 -1.4194 25 1 -0.3633 0.5797 -0.8485 26 1 -0.3633 -1.0248 -0.0779 27 1 -0.3634 0.4449 0.9262 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.9417 1.7129 2.1036 31 1 -1.2872 2.2118 1.1855 32 1 -0.6877 2.5525 -0.4554 33 1 -1.9207 4.5946 1.4488 34 1 -1.3213 4.9353 -0.1923 35 1 -4.6102 6.5886 -0.0851 36 1 3.3274 3.5870 -0.4687 37 1 4.4644 3.1676 0.8498 38 1 5.0659 3.5370 -1.9873 39 1 6.2047 3.1192 -0.6701 40 1 5.5342 1.3558 -2.7102 41 1 6.0125 0.8150 -1.0719 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157730110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:11 Heat of formation + Delta-G solvation = -141.388012 kcal Electronic energy + Delta-G solvation = -22617.518632 eV Core-core repulsion = 19237.842484 eV Total energy + Delta-G solvation = -3379.676148 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.74882 -36.78842 -36.40211 -35.46693 -33.92847 -32.28455 -31.54045 -31.06036 -29.55054 -25.77043 -25.40586 -22.57271 -21.77409 -21.05540 -20.98019 -19.12777 -17.56625 -16.72701 -16.53400 -16.16186 -15.81686 -15.35670 -15.17909 -14.68312 -14.55791 -14.13696 -13.69553 -13.53429 -13.38370 -12.62517 -12.50150 -12.26146 -11.95642 -11.84675 -11.67114 -11.57791 -11.57115 -11.32793 -11.17245 -11.10356 -11.07617 -10.86376 -10.83432 -10.56062 -10.36985 -10.32230 -9.92049 -9.77501 -9.46936 -9.04369 -8.49610 -6.12013 -4.17480 0.75900 3.02726 3.27676 3.32616 3.34285 3.81942 4.21379 4.37396 4.39468 4.59673 4.68365 4.81859 4.87664 5.00900 5.06063 5.19780 5.23343 5.24935 5.36302 5.45911 5.55092 5.58694 5.61883 5.70395 5.79202 5.84335 5.92911 5.95093 6.02305 6.25394 6.29447 6.35746 6.53458 6.72433 7.08103 7.29883 7.36011 7.80907 8.17793 8.85698 9.47285 10.99031 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.022035 B = 0.004360 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.383164 B = 6420.286610 C = 6743.437729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.130 4.130 3 C 0.161 3.839 4 H 0.099 0.901 5 N -1.117 6.117 6 S 2.588 3.412 7 O -0.963 6.963 8 O -0.967 6.967 9 C -0.591 4.591 10 C 0.029 3.971 11 C -0.519 4.519 12 H 0.061 0.939 13 C 0.058 3.942 14 N -0.891 5.891 15 Si 0.899 3.101 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.069 3.931 20 H 0.070 0.930 21 C -0.164 4.164 22 C -0.156 4.156 23 C 0.046 3.954 24 O -0.369 6.369 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.413 0.587 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.032 0.968 34 H 0.033 0.967 35 H 0.265 0.735 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.293 -11.562 -0.651 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.169 4.169 3 C 0.052 3.948 4 H 0.117 0.883 5 N -0.874 5.874 6 S 2.686 3.314 7 O -0.953 6.953 8 O -0.958 6.958 9 C -0.724 4.724 10 C -0.010 4.010 11 C -0.559 4.559 12 H 0.080 0.920 13 C -0.144 4.144 14 N -0.529 5.529 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C 0.009 3.991 20 H 0.088 0.912 21 C -0.202 4.202 22 C -0.193 4.193 23 C -0.031 4.031 24 O -0.287 6.287 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.246 0.754 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.374 -10.582 -0.662 19.507 hybrid contribution -0.970 -0.765 -0.080 1.238 sum 15.404 -11.347 -0.742 19.146 Atomic orbital electron populations 1.22015 0.95082 1.02255 1.02773 1.21891 0.96654 0.95404 1.02945 1.20684 0.92950 0.94887 0.86230 0.88344 1.55825 1.70738 1.47777 1.13019 1.05694 0.77395 0.73446 0.74862 1.93516 1.71396 1.63851 1.66518 1.93556 1.87279 1.81374 1.33566 1.30604 1.18221 1.11778 1.11794 1.18956 0.93928 0.89161 0.98942 1.20957 0.96736 0.95292 1.42909 0.92049 1.25056 0.99067 0.94889 0.95407 1.69942 1.33863 1.01868 1.47226 0.86541 0.83083 0.78085 0.79631 1.20087 1.21101 1.20072 1.23309 0.95292 0.93819 0.86645 0.91200 1.23199 0.99300 0.97775 0.99885 1.22937 0.99148 0.97434 0.99824 1.23388 0.84890 0.93344 1.01456 1.89094 1.30485 1.72451 1.36650 0.91870 0.92425 0.92111 0.90151 0.91549 0.75436 0.85900 0.86077 0.94958 0.94835 0.92491 0.87516 0.90862 0.90520 0.90892 0.89156 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 8.74 37.16 0.32 -1.49 16 2 C -0.13 -1.32 5.57 -26.73 -0.15 -1.47 16 3 C 0.16 1.90 1.84 -67.93 -0.12 1.77 16 4 H 0.10 1.27 7.66 -51.93 -0.40 0.87 16 5 N -1.12 -13.77 4.46 -4.89 -0.02 -13.80 16 6 S 2.59 44.63 5.32 -107.50 -0.57 44.05 16 7 O -0.96 -18.79 15.42 -57.54 -0.89 -19.68 16 8 O -0.97 -19.62 18.08 -57.54 -1.04 -20.66 16 9 C -0.59 -10.99 4.70 37.16 0.17 -10.82 16 10 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 11 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 12 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 15 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 C 0.07 0.78 3.00 -25.95 -0.08 0.70 16 20 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 21 C -0.16 -1.99 6.25 -25.16 -0.16 -2.15 16 22 C -0.16 -1.54 7.09 -25.16 -0.18 -1.72 16 23 C 0.05 0.43 7.63 37.93 0.29 0.72 16 24 O -0.37 -4.38 10.83 -35.23 -0.38 -4.76 16 25 H 0.06 0.75 6.99 -51.93 -0.36 0.38 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.68 6.19 -51.93 -0.32 0.36 16 28 H 0.08 0.82 7.71 -51.93 -0.40 0.41 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.41 4.12 8.92 -34.47 -0.31 3.82 16 31 H 0.12 2.06 7.03 -51.93 -0.37 1.70 16 32 H 0.12 2.03 6.69 -51.93 -0.35 1.68 16 33 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 36 H 0.11 1.58 5.52 -51.93 -0.29 1.30 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -33.60 336.79 -9.12 -42.71 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.56 Total: 3.37 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: -0.45 Total: -26.78 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.71 Total: -39.41 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -2.31 Total: -45.10 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 44.63 SS G_CDS: -0.57 Total: 44.05 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.60 -9.12 -42.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157730110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.674 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds