Wall clock time and date at job start Tue Mar 31 2020 07:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46873 * 2 1 4 4 H 1.08997 * 109.47061 * 305.47200 * 3 2 1 5 5 N 1.46502 * 109.47148 * 65.47626 * 3 2 1 6 6 S 1.65600 * 119.99955 * 237.29597 * 5 3 2 7 7 O 1.42099 * 104.27636 * 309.27344 * 6 5 3 8 8 O 1.42101 * 104.27815 * 181.41358 * 6 5 3 9 9 C 1.81404 * 104.44705 * 65.34233 * 6 5 3 10 10 C 1.52999 * 109.46813 * 180.54918 * 9 6 5 11 11 C 1.50704 * 109.47172 * 179.97438 * 10 9 6 12 12 H 1.08003 * 119.99381 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00232 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99714 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00034 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47357 * 59.99717 * 15 13 11 17 17 H 1.48500 * 109.47171 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46773 * 299.99697 * 15 13 11 19 19 C 1.53000 * 109.46777 * 185.47607 * 3 2 1 20 20 H 1.08996 * 110.33214 * 302.24725 * 19 3 2 21 21 C 1.54486 * 110.36878 * 179.97438 * 19 3 2 22 22 C 1.54513 * 104.06069 * 217.18849 * 21 19 3 23 23 C 1.54480 * 104.06271 * 0.02562 * 22 21 19 24 24 O 1.44421 * 104.80514 * 23.97692 * 23 22 21 25 25 H 1.09000 * 109.46895 * 55.65886 * 1 2 3 26 26 H 1.09006 * 109.47046 * 175.65271 * 1 2 3 27 27 H 1.08992 * 109.47510 * 295.65774 * 1 2 3 28 28 H 1.08996 * 109.47625 * 240.00114 * 2 1 3 29 29 H 1.09007 * 109.46852 * 119.99562 * 2 1 3 30 30 H 0.96998 * 119.99779 * 57.29933 * 5 3 2 31 31 H 1.08991 * 109.47225 * 60.54734 * 9 6 5 32 32 H 1.08995 * 109.46790 * 300.54516 * 9 6 5 33 33 H 1.09004 * 109.47000 * 299.99965 * 10 9 6 34 34 H 1.09000 * 109.47623 * 60.00045 * 10 9 6 35 35 H 0.96999 * 120.00076 * 179.97438 * 14 13 11 36 36 H 1.09000 * 110.51080 * 335.83284 * 21 19 3 37 37 H 1.09003 * 110.50816 * 98.41249 * 21 19 3 38 38 H 1.08998 * 110.50615 * 118.64535 * 22 21 19 39 39 H 1.08995 * 110.50997 * 241.21927 * 22 21 19 40 40 H 1.08994 * 110.36995 * 142.80724 * 23 22 21 41 41 H 1.08997 * 110.37168 * 265.14518 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5988 1.9838 -0.8369 5 7 1.6622 2.0941 1.2566 6 16 0.7581 3.4812 1.2309 7 8 1.4445 4.3301 0.3213 8 8 0.6192 3.8345 2.6003 9 6 -0.8391 2.9678 0.5409 10 6 -1.7694 4.1792 0.4524 11 6 -3.0961 3.7529 -0.1215 12 1 -3.2591 2.7211 -0.3960 13 6 -4.1017 4.6799 -0.2960 14 7 -3.9029 5.9363 0.0380 15 14 -5.7463 4.1512 -1.0066 16 1 -6.3567 3.1208 -0.1287 17 1 -6.6493 5.3270 -1.0926 18 1 -5.5401 3.5858 -2.3642 19 6 3.5637 1.4447 -0.1377 20 1 4.0179 0.8727 0.6714 21 6 4.1013 2.8930 -0.1406 22 6 5.2647 2.8596 -1.1569 23 6 5.2919 1.3952 -1.6482 24 8 3.9531 0.9042 -1.4194 25 1 -0.3633 0.5797 -0.8485 26 1 -0.3633 -1.0248 -0.0779 27 1 -0.3634 0.4449 0.9262 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.9417 1.7129 2.1036 31 1 -1.2872 2.2118 1.1855 32 1 -0.6877 2.5525 -0.4554 33 1 -1.9207 4.5946 1.4488 34 1 -1.3213 4.9353 -0.1923 35 1 -4.6102 6.5886 -0.0851 36 1 3.3274 3.5870 -0.4687 37 1 4.4644 3.1676 0.8498 38 1 5.0659 3.5370 -1.9873 39 1 6.2047 3.1192 -0.6701 40 1 5.5342 1.3558 -2.7102 41 1 6.0125 0.8150 -1.0719 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157730110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:10 Heat of formation + Delta-G solvation = -166.447513 kcal Electronic energy + Delta-G solvation = -22618.605293 eV Core-core repulsion = 19237.842484 eV Total energy + Delta-G solvation = -3380.762810 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.60665 -38.18741 -37.50108 -37.00203 -35.90046 -33.33803 -32.98372 -32.33316 -30.43282 -27.60045 -26.43538 -23.64325 -23.32083 -22.05535 -21.84000 -20.48031 -19.13658 -18.32075 -17.72326 -17.15125 -16.99398 -16.64131 -16.52560 -16.40190 -15.67126 -15.12447 -15.04708 -14.58780 -14.45148 -14.36290 -13.72953 -13.53474 -13.29337 -13.20231 -13.11939 -12.97186 -12.90158 -12.70972 -12.55938 -12.29366 -12.26793 -12.11922 -12.02568 -11.88752 -11.70279 -11.62518 -11.42027 -11.09344 -10.72590 -10.62453 -10.33921 -8.24657 -6.38194 -0.69163 1.41470 1.44663 1.52676 1.77490 2.38922 2.79160 2.94764 3.08994 3.29945 3.49659 3.75768 3.95920 4.00288 4.09321 4.13019 4.19943 4.21396 4.36478 4.41939 4.51318 4.68511 4.73556 4.76171 4.85023 4.96379 4.99376 5.03799 5.15645 5.22476 5.27826 5.29442 5.36384 5.39929 5.51508 5.70140 5.91478 6.07896 6.16017 6.75174 7.31848 8.87465 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.022035 B = 0.004360 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.383164 B = 6420.286610 C = 6743.437729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.121 4.121 3 C 0.154 3.846 4 H 0.083 0.917 5 N -1.094 6.094 6 S 2.616 3.384 7 O -0.987 6.987 8 O -0.998 6.998 9 C -0.590 4.590 10 C 0.023 3.977 11 C -0.537 4.537 12 H 0.076 0.924 13 C -0.003 4.003 14 N -0.935 5.935 15 Si 0.971 3.029 16 H -0.263 1.263 17 H -0.285 1.285 18 H -0.264 1.264 19 C 0.072 3.928 20 H 0.094 0.906 21 C -0.174 4.174 22 C -0.155 4.155 23 C 0.043 3.957 24 O -0.385 6.385 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.428 0.572 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.005 0.995 34 H 0.006 0.994 35 H 0.267 0.733 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.040 -14.207 -0.919 22.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.160 4.160 3 C 0.046 3.954 4 H 0.101 0.899 5 N -0.856 5.856 6 S 2.712 3.288 7 O -0.977 6.977 8 O -0.988 6.988 9 C -0.722 4.722 10 C -0.016 4.016 11 C -0.576 4.576 12 H 0.094 0.906 13 C -0.201 4.201 14 N -0.574 5.574 15 Si 0.795 3.205 16 H -0.188 1.188 17 H -0.210 1.210 18 H -0.188 1.188 19 C 0.013 3.987 20 H 0.111 0.889 21 C -0.212 4.212 22 C -0.193 4.193 23 C -0.033 4.033 24 O -0.304 6.304 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.265 0.735 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.023 0.977 34 H 0.025 0.975 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 17.121 -13.245 -0.926 21.667 hybrid contribution -1.101 0.046 -0.007 1.102 sum 16.020 -13.200 -0.933 20.779 Atomic orbital electron populations 1.22078 0.95797 1.02913 1.02037 1.21839 0.95931 0.94028 1.04185 1.20860 0.93860 0.95682 0.84984 0.89884 1.55241 1.69424 1.46540 1.14399 1.04591 0.76800 0.73905 0.73489 1.93497 1.71584 1.65466 1.67107 1.93509 1.87663 1.82522 1.35092 1.30521 1.18358 1.09506 1.13816 1.18798 0.95013 0.91173 0.96617 1.21478 0.97620 0.96036 1.42433 0.90590 1.26084 1.03404 0.94821 0.95788 1.70093 1.35257 1.03270 1.48809 0.85403 0.77953 0.77835 0.79309 1.18767 1.21044 1.18833 1.23304 0.94567 0.93470 0.87369 0.88855 1.23229 0.99410 0.97846 1.00746 1.22953 0.99114 0.98042 0.99141 1.23579 0.84179 0.92829 1.02698 1.89070 1.31912 1.72593 1.36846 0.93085 0.91076 0.92437 0.89678 0.89443 0.73505 0.83835 0.84241 0.97660 0.97542 0.92448 0.90727 0.90320 0.91319 0.88972 0.87937 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.39 8.74 71.98 0.63 -2.77 16 2 C -0.12 -2.13 5.57 30.60 0.17 -1.96 16 3 C 0.15 3.38 1.84 44.99 0.08 3.46 16 4 H 0.08 2.10 7.66 -2.39 -0.02 2.08 16 5 N -1.09 -25.46 4.46 -169.38 -0.75 -26.21 16 6 S 2.62 90.88 5.32 -56.49 -0.30 90.58 16 7 O -0.99 -39.59 15.42 -127.65 -1.97 -41.56 16 8 O -1.00 -40.83 18.08 -127.65 -2.31 -43.14 16 9 C -0.59 -22.05 4.70 71.98 0.34 -21.72 16 10 C 0.02 1.19 4.98 29.85 0.15 1.34 16 11 C -0.54 -29.55 9.11 25.60 0.23 -29.32 16 12 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 13 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 14 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 15 Si 0.97 43.22 29.54 68.60 2.03 45.25 16 16 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 18 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 19 C 0.07 1.47 3.00 31.10 0.09 1.57 16 20 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 21 C -0.17 -4.06 6.25 31.61 0.20 -3.86 16 22 C -0.15 -2.82 7.09 31.61 0.22 -2.59 16 23 C 0.04 0.70 7.63 72.49 0.55 1.25 16 24 O -0.39 -8.30 10.83 -148.98 -1.61 -9.92 16 25 H 0.05 1.13 6.99 -2.39 -0.02 1.11 16 26 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.06 1.16 6.19 -2.39 -0.01 1.14 16 28 H 0.08 1.48 7.71 -2.39 -0.02 1.47 16 29 H 0.09 1.20 8.14 -2.38 -0.02 1.19 16 30 H 0.43 7.57 8.92 -96.75 -0.86 6.71 16 31 H 0.14 4.70 7.03 -2.39 -0.02 4.69 16 32 H 0.14 4.64 6.69 -2.39 -0.02 4.62 16 33 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 34 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 36 H 0.07 2.25 5.52 -2.39 -0.01 2.23 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -73.87 336.79 -1.35 -75.22 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.16 Total: 20.66 kcal Atomic # 6 Polarization: -57.41 SS G_CDS: 3.13 Total: -54.28 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -0.47 Total: -82.81 kcal Atomic # 8 Polarization: -88.73 SS G_CDS: -5.89 Total: -94.62 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 90.88 SS G_CDS: -0.30 Total: 90.58 kcal Total: -73.87 -1.35 -75.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157730110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.232 kcal (2) G-P(sol) polarization free energy of solvation -73.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds