Wall clock time and date at job start Tue Mar 31 2020 07:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46949 * 2 1 4 4 H 1.08998 * 109.47026 * 305.42055 * 3 2 1 5 5 N 1.46495 * 109.47207 * 65.42359 * 3 2 1 6 6 S 1.65594 * 120.00172 * 240.49788 * 5 3 2 7 7 O 1.42105 * 104.27681 * 310.29816 * 6 5 3 8 8 O 1.42101 * 104.28124 * 182.44230 * 6 5 3 9 9 C 1.81398 * 104.45160 * 66.36971 * 6 5 3 10 10 C 1.53001 * 109.47497 * 178.78761 * 9 6 5 11 11 C 1.50691 * 109.47397 * 179.97438 * 10 9 6 12 12 H 1.08004 * 120.00489 * 0.02562 * 11 10 9 13 13 C 1.37884 * 120.00200 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00115 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99838 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47090 * 89.99519 * 15 13 11 17 17 H 1.48500 * 109.47258 * 210.00094 * 15 13 11 18 18 H 1.48499 * 109.47131 * 329.99813 * 15 13 11 19 19 C 1.53004 * 109.47093 * 185.42507 * 3 2 1 20 20 H 1.08998 * 109.86843 * 63.99302 * 19 3 2 21 21 C 1.54101 * 109.87578 * 185.00378 * 19 3 2 22 22 C 1.54806 * 104.18763 * 121.45396 * 21 19 3 23 23 C 1.54998 * 102.09375 * 20.87634 * 22 21 19 24 24 O 1.43747 * 109.87769 * 302.83132 * 19 3 2 25 25 H 1.08996 * 109.47406 * 54.00789 * 1 2 3 26 26 H 1.09003 * 109.46809 * 174.00677 * 1 2 3 27 27 H 1.08997 * 109.47229 * 294.00344 * 1 2 3 28 28 H 1.09004 * 109.47198 * 240.00231 * 2 1 3 29 29 H 1.08994 * 109.47319 * 120.00258 * 2 1 3 30 30 H 0.97010 * 119.99656 * 60.49047 * 5 3 2 31 31 H 1.09004 * 109.47350 * 58.78904 * 9 6 5 32 32 H 1.09003 * 109.46928 * 298.78479 * 9 6 5 33 33 H 1.09001 * 109.47220 * 300.00439 * 10 9 6 34 34 H 1.09002 * 109.47215 * 59.99844 * 10 9 6 35 35 H 0.96997 * 119.99394 * 180.02562 * 14 13 11 36 36 H 1.09005 * 110.48065 * 240.12463 * 21 19 3 37 37 H 1.08997 * 110.48901 * 2.63641 * 21 19 3 38 38 H 1.09000 * 110.90719 * 139.07439 * 22 21 19 39 39 H 1.08999 * 110.90842 * 262.67841 * 22 21 19 40 40 H 1.08998 * 110.61542 * 81.47940 * 23 22 21 41 41 H 1.09004 * 110.61516 * 204.32130 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5995 1.9836 -0.8375 5 7 1.6611 2.0944 1.2560 6 16 0.6911 3.4363 1.2328 7 8 1.3008 4.2929 0.2768 8 8 0.5878 3.8179 2.5977 9 6 -0.9047 2.8307 0.6186 10 6 -1.9077 3.9855 0.5795 11 6 -3.2332 3.4825 0.0687 12 1 -3.3489 2.4431 -0.2007 13 6 -4.2986 4.3491 -0.0538 14 7 -5.4553 3.9103 -0.5001 15 14 -4.0987 6.1468 0.4128 16 1 -3.6537 6.9198 -0.7745 17 1 -5.3985 6.6812 0.8927 18 1 -3.0851 6.2686 1.4911 19 6 3.5639 1.4447 -0.1364 20 1 3.8501 1.0251 -1.1007 21 6 4.0990 2.8845 -0.0118 22 6 5.0754 2.8239 1.1880 23 6 5.4040 1.3110 1.2631 24 8 4.1510 0.6771 0.9278 25 1 -0.3634 0.6039 -0.8314 26 1 -0.3633 -1.0221 -0.1073 27 1 -0.3633 0.4180 0.9388 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.9785 1.7399 2.1014 31 1 -1.2763 2.0492 1.2814 32 1 -0.7776 2.4257 -0.3854 33 1 -2.0347 4.3906 1.5834 34 1 -1.5362 4.7671 -0.0833 35 1 -6.2046 4.5200 -0.5866 36 1 4.6278 3.1748 -0.9197 37 1 3.2835 3.5783 0.1920 38 1 5.9740 3.4076 0.9881 39 1 4.5890 3.1621 2.1029 40 1 6.1733 1.0488 0.5368 41 1 5.7186 1.0361 2.2700 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157730393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:14 Heat of formation + Delta-G solvation = -134.667336 kcal Electronic energy + Delta-G solvation = -22868.743611 eV Core-core repulsion = 19489.358893 eV Total energy + Delta-G solvation = -3379.384718 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.89011 -36.82386 -36.30868 -35.59962 -34.00480 -32.29966 -31.68027 -31.27087 -29.69584 -26.09776 -25.47515 -22.68062 -21.37490 -21.09576 -20.91212 -19.13069 -17.68412 -17.00488 -16.69088 -16.40989 -15.80091 -15.41902 -15.37004 -14.60835 -14.39745 -14.08031 -13.67852 -13.65537 -13.54157 -12.82114 -12.61189 -12.30246 -12.07952 -11.96532 -11.79908 -11.67860 -11.60182 -11.41207 -11.28888 -11.25935 -11.09396 -10.86006 -10.81372 -10.67544 -10.39168 -10.16713 -9.97390 -9.71324 -9.43508 -9.09629 -8.66511 -6.16832 -4.17864 0.66269 3.01526 3.25871 3.33459 3.37654 3.68745 4.11652 4.35485 4.41329 4.48331 4.59330 4.77454 4.82771 5.00383 5.02895 5.10576 5.15196 5.21761 5.31960 5.45294 5.51414 5.52774 5.56965 5.60211 5.72251 5.82386 5.89139 5.92586 6.04822 6.20950 6.23798 6.30762 6.44174 6.75964 6.81847 6.92646 7.13977 7.54616 8.36459 8.84705 9.43060 10.95543 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.027069 B = 0.004713 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.152085 B = 5940.096178 C = 6555.685163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.129 4.129 3 C 0.155 3.845 4 H 0.100 0.900 5 N -1.112 6.112 6 S 2.584 3.416 7 O -0.966 6.966 8 O -0.967 6.967 9 C -0.587 4.587 10 C -0.007 4.007 11 C -0.518 4.518 12 H 0.078 0.922 13 C 0.072 3.928 14 N -0.896 5.896 15 Si 0.868 3.132 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.262 1.262 19 C 0.071 3.929 20 H 0.076 0.924 21 C -0.167 4.167 22 C -0.155 4.155 23 C 0.047 3.953 24 O -0.368 6.368 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.417 0.583 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.032 0.968 34 H 0.027 0.973 35 H 0.266 0.734 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.173 -6.902 1.080 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.169 4.169 3 C 0.047 3.953 4 H 0.118 0.882 5 N -0.869 5.869 6 S 2.681 3.319 7 O -0.956 6.956 8 O -0.958 6.958 9 C -0.720 4.720 10 C -0.046 4.046 11 C -0.557 4.557 12 H 0.097 0.903 13 C -0.131 4.131 14 N -0.533 5.533 15 Si 0.694 3.306 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.187 1.187 19 C 0.012 3.988 20 H 0.094 0.906 21 C -0.204 4.204 22 C -0.192 4.192 23 C -0.030 4.030 24 O -0.287 6.287 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.251 0.749 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 20.134 -6.083 1.227 21.069 hybrid contribution -0.181 0.407 0.177 0.479 sum 19.954 -5.676 1.404 20.793 Atomic orbital electron populations 1.22107 0.95113 1.02470 1.02740 1.21847 0.96376 0.95470 1.03158 1.21044 0.93197 0.94715 0.86320 0.88166 1.55663 1.67163 1.50136 1.13909 1.05730 0.77309 0.74057 0.74760 1.93518 1.74205 1.63672 1.64184 1.93562 1.87252 1.81031 1.33909 1.30542 1.17731 1.11449 1.12246 1.19407 0.95307 0.91577 0.98287 1.20841 0.92417 0.98039 1.44387 0.90342 1.24980 0.95053 0.98735 0.94301 1.69881 1.01877 1.35796 1.45792 0.86943 0.78200 0.85528 0.79885 1.19695 1.20768 1.18654 1.23099 0.93322 0.91241 0.91151 0.90603 1.23204 1.00907 0.97697 0.98619 1.23113 0.99726 0.96914 0.99485 1.23522 0.87093 0.91598 1.00780 1.88847 1.34294 1.51285 1.54248 0.91934 0.92323 0.91991 0.91085 0.90541 0.74889 0.85230 0.85464 0.95019 0.95486 0.92399 0.90841 0.87820 0.90504 0.90589 0.92463 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 8.54 37.16 0.32 -1.55 16 2 C -0.13 -1.29 5.35 -26.73 -0.14 -1.43 16 3 C 0.16 1.71 2.00 -67.93 -0.14 1.58 16 4 H 0.10 1.08 7.62 -51.93 -0.40 0.69 16 5 N -1.11 -13.79 4.01 -4.89 -0.02 -13.81 16 6 S 2.58 42.70 5.28 -107.50 -0.57 42.13 16 7 O -0.97 -17.68 15.27 -57.54 -0.88 -18.56 16 8 O -0.97 -18.94 18.08 -57.54 -1.04 -19.98 16 9 C -0.59 -10.47 4.51 37.16 0.17 -10.30 16 10 C -0.01 -0.15 4.05 -27.89 -0.11 -0.26 16 11 C -0.52 -14.23 9.66 -34.44 -0.33 -14.57 16 12 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 13 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 14 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 15 Si 0.87 21.36 27.47 -169.99 -4.67 16.69 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 19 C 0.07 0.74 3.29 -26.15 -0.09 0.65 16 20 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 21 C -0.17 -1.83 6.35 -25.20 -0.16 -1.99 16 22 C -0.15 -1.47 7.15 -24.72 -0.18 -1.65 16 23 C 0.05 0.41 7.72 38.21 0.29 0.70 16 24 O -0.37 -3.94 10.39 -35.23 -0.37 -4.31 16 25 H 0.06 0.72 6.69 -51.93 -0.35 0.38 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.72 5.86 -51.93 -0.30 0.42 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.78 7.80 -51.93 -0.41 0.37 16 30 H 0.42 4.70 8.85 -34.47 -0.31 4.40 16 31 H 0.13 2.13 6.78 -51.92 -0.35 1.78 16 32 H 0.13 2.03 6.36 -51.92 -0.33 1.70 16 33 H 0.03 0.75 7.20 -51.93 -0.37 0.37 16 34 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 35 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.40 4.65 -51.93 -0.24 1.16 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 330.14 15.07 4.98 4.98 Total: -1.00 -33.38 330.14 -8.68 -42.06 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.42 Total: 3.75 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: -0.47 Total: -26.86 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.75 Total: -39.90 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -2.28 Total: -42.84 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 16 Polarization: 42.70 SS G_CDS: -0.57 Total: 42.13 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.38 -8.68 -42.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157730393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.612 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds