Wall clock time and date at job start Tue Mar 31 2020 07:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46949 * 2 1 4 4 H 1.08998 * 109.47026 * 305.42055 * 3 2 1 5 5 N 1.46495 * 109.47207 * 65.42359 * 3 2 1 6 6 S 1.65594 * 120.00172 * 240.49788 * 5 3 2 7 7 O 1.42105 * 104.27681 * 310.29816 * 6 5 3 8 8 O 1.42101 * 104.28124 * 182.44230 * 6 5 3 9 9 C 1.81398 * 104.45160 * 66.36971 * 6 5 3 10 10 C 1.53001 * 109.47497 * 178.78761 * 9 6 5 11 11 C 1.50691 * 109.47397 * 179.97438 * 10 9 6 12 12 H 1.08004 * 120.00489 * 0.02562 * 11 10 9 13 13 C 1.37884 * 120.00200 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00115 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99838 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47090 * 89.99519 * 15 13 11 17 17 H 1.48500 * 109.47258 * 210.00094 * 15 13 11 18 18 H 1.48499 * 109.47131 * 329.99813 * 15 13 11 19 19 C 1.53004 * 109.47093 * 185.42507 * 3 2 1 20 20 H 1.08998 * 109.86843 * 63.99302 * 19 3 2 21 21 C 1.54101 * 109.87578 * 185.00378 * 19 3 2 22 22 C 1.54806 * 104.18763 * 121.45396 * 21 19 3 23 23 C 1.54998 * 102.09375 * 20.87634 * 22 21 19 24 24 O 1.43747 * 109.87769 * 302.83132 * 19 3 2 25 25 H 1.08996 * 109.47406 * 54.00789 * 1 2 3 26 26 H 1.09003 * 109.46809 * 174.00677 * 1 2 3 27 27 H 1.08997 * 109.47229 * 294.00344 * 1 2 3 28 28 H 1.09004 * 109.47198 * 240.00231 * 2 1 3 29 29 H 1.08994 * 109.47319 * 120.00258 * 2 1 3 30 30 H 0.97010 * 119.99656 * 60.49047 * 5 3 2 31 31 H 1.09004 * 109.47350 * 58.78904 * 9 6 5 32 32 H 1.09003 * 109.46928 * 298.78479 * 9 6 5 33 33 H 1.09001 * 109.47220 * 300.00439 * 10 9 6 34 34 H 1.09002 * 109.47215 * 59.99844 * 10 9 6 35 35 H 0.96997 * 119.99394 * 180.02562 * 14 13 11 36 36 H 1.09005 * 110.48065 * 240.12463 * 21 19 3 37 37 H 1.08997 * 110.48901 * 2.63641 * 21 19 3 38 38 H 1.09000 * 110.90719 * 139.07439 * 22 21 19 39 39 H 1.08999 * 110.90842 * 262.67841 * 22 21 19 40 40 H 1.08998 * 110.61542 * 81.47940 * 23 22 21 41 41 H 1.09004 * 110.61516 * 204.32130 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5995 1.9836 -0.8375 5 7 1.6611 2.0944 1.2560 6 16 0.6911 3.4363 1.2328 7 8 1.3008 4.2929 0.2768 8 8 0.5878 3.8179 2.5977 9 6 -0.9047 2.8307 0.6186 10 6 -1.9077 3.9855 0.5795 11 6 -3.2332 3.4825 0.0687 12 1 -3.3489 2.4431 -0.2007 13 6 -4.2986 4.3491 -0.0538 14 7 -5.4553 3.9103 -0.5001 15 14 -4.0987 6.1468 0.4128 16 1 -3.6537 6.9198 -0.7745 17 1 -5.3985 6.6812 0.8927 18 1 -3.0851 6.2686 1.4911 19 6 3.5639 1.4447 -0.1364 20 1 3.8501 1.0251 -1.1007 21 6 4.0990 2.8845 -0.0118 22 6 5.0754 2.8239 1.1880 23 6 5.4040 1.3110 1.2631 24 8 4.1510 0.6771 0.9278 25 1 -0.3634 0.6039 -0.8314 26 1 -0.3633 -1.0221 -0.1073 27 1 -0.3633 0.4180 0.9388 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.9785 1.7399 2.1014 31 1 -1.2763 2.0492 1.2814 32 1 -0.7776 2.4257 -0.3854 33 1 -2.0347 4.3906 1.5834 34 1 -1.5362 4.7671 -0.0833 35 1 -6.2046 4.5200 -0.5866 36 1 4.6278 3.1748 -0.9197 37 1 3.2835 3.5783 0.1920 38 1 5.9740 3.4076 0.9881 39 1 4.5890 3.1621 2.1029 40 1 6.1733 1.0488 0.5368 41 1 5.7186 1.0361 2.2700 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157730393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:14 Heat of formation + Delta-G solvation = -159.626755 kcal Electronic energy + Delta-G solvation = -22869.825932 eV Core-core repulsion = 19489.358893 eV Total energy + Delta-G solvation = -3380.467039 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.67860 -38.20115 -37.27801 -37.03056 -35.90492 -33.57955 -33.01933 -32.36978 -30.51993 -27.89748 -26.39456 -23.53984 -23.02815 -21.94687 -21.82353 -20.41298 -19.39127 -18.49069 -17.77104 -17.29232 -16.94778 -16.64111 -16.46130 -16.33965 -15.61978 -15.13106 -15.09233 -14.75684 -14.47503 -14.43011 -13.80589 -13.53886 -13.28126 -13.23226 -13.14957 -13.13035 -13.02324 -12.76141 -12.50993 -12.25721 -12.15471 -12.05655 -11.91496 -11.85817 -11.69130 -11.59613 -11.48417 -11.14645 -10.82918 -10.74259 -10.16940 -8.35095 -6.40177 -0.70548 1.31881 1.34254 1.43895 1.79813 2.30253 2.74853 2.95662 2.99031 3.22553 3.58809 3.74887 3.91076 3.98990 4.05942 4.09077 4.21987 4.23520 4.36769 4.45181 4.54882 4.57607 4.74065 4.77403 4.88319 4.94440 4.99434 5.03183 5.09160 5.10672 5.17743 5.25218 5.36666 5.42788 5.49199 5.54928 6.02639 6.15896 6.19042 6.66074 7.24042 8.80401 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.027069 B = 0.004713 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.152085 B = 5940.096178 C = 6555.685163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.120 4.120 3 C 0.145 3.855 4 H 0.103 0.897 5 N -1.095 6.095 6 S 2.614 3.386 7 O -0.980 6.980 8 O -0.997 6.997 9 C -0.593 4.593 10 C -0.016 4.016 11 C -0.523 4.523 12 H 0.051 0.949 13 C 0.015 3.985 14 N -0.940 5.940 15 Si 0.922 3.078 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.251 1.251 19 C 0.074 3.926 20 H 0.097 0.903 21 C -0.175 4.175 22 C -0.156 4.156 23 C 0.046 3.954 24 O -0.381 6.381 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.425 0.575 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.028 0.972 34 H 0.031 0.969 35 H 0.269 0.731 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.448 -7.070 1.082 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.159 4.159 3 C 0.038 3.962 4 H 0.120 0.880 5 N -0.855 5.855 6 S 2.710 3.290 7 O -0.970 6.970 8 O -0.987 6.987 9 C -0.724 4.724 10 C -0.055 4.055 11 C -0.562 4.562 12 H 0.070 0.930 13 C -0.184 4.184 14 N -0.580 5.580 15 Si 0.745 3.255 16 H -0.184 1.184 17 H -0.200 1.200 18 H -0.175 1.175 19 C 0.014 3.986 20 H 0.115 0.885 21 C -0.212 4.212 22 C -0.194 4.194 23 C -0.030 4.030 24 O -0.300 6.300 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.261 0.739 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 22.409 -6.257 1.232 23.299 hybrid contribution -0.827 0.347 0.148 0.909 sum 21.582 -5.910 1.380 22.419 Atomic orbital electron populations 1.22156 0.96240 1.02738 1.01921 1.21780 0.95208 0.94757 1.04130 1.21329 0.94283 0.95203 0.85370 0.87960 1.55262 1.65776 1.49335 1.15163 1.04641 0.76593 0.74295 0.73491 1.93505 1.74143 1.64778 1.64583 1.93517 1.87601 1.82089 1.35503 1.30563 1.17933 1.09966 1.13930 1.19361 0.94734 0.93626 0.97741 1.21159 0.94456 0.96985 1.43599 0.93028 1.25839 0.94804 1.03255 0.94486 1.70007 1.02866 1.37489 1.47609 0.86066 0.78715 0.80401 0.80303 1.18444 1.20043 1.17508 1.23114 0.92349 0.91026 0.92063 0.88546 1.23241 1.00600 0.97555 0.99851 1.23135 0.99949 0.97987 0.98289 1.23668 0.86696 0.90639 1.02028 1.88828 1.35231 1.51531 1.54403 0.92666 0.91616 0.92880 0.89222 0.90387 0.73886 0.84192 0.83894 0.95326 0.95027 0.92186 0.89601 0.90430 0.88928 0.91869 0.90821 0.88072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.64 8.54 71.98 0.61 -3.03 16 2 C -0.12 -2.11 5.35 30.60 0.16 -1.94 16 3 C 0.15 2.91 2.00 45.00 0.09 3.00 16 4 H 0.10 2.03 7.62 -2.39 -0.02 2.01 16 5 N -1.09 -25.59 4.01 -169.39 -0.68 -26.27 16 6 S 2.61 83.98 5.28 -56.49 -0.30 83.68 16 7 O -0.98 -34.90 15.27 -127.65 -1.95 -36.85 16 8 O -1.00 -38.31 18.08 -127.65 -2.31 -40.61 16 9 C -0.59 -20.85 4.51 71.98 0.32 -20.53 16 10 C -0.02 -0.72 4.05 29.85 0.12 -0.60 16 11 C -0.52 -29.18 9.66 25.60 0.25 -28.93 16 12 H 0.05 3.06 7.99 -2.91 -0.02 3.04 16 13 C 0.01 0.84 5.47 84.66 0.46 1.31 16 14 N -0.94 -57.48 13.96 21.45 0.30 -57.19 16 15 Si 0.92 43.69 27.47 68.60 1.88 45.57 16 16 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.25 -11.37 6.54 99.48 0.65 -10.72 16 19 C 0.07 1.34 3.29 30.97 0.10 1.44 16 20 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 21 C -0.17 -3.49 6.35 31.58 0.20 -3.29 16 22 C -0.16 -2.63 7.15 31.89 0.23 -2.40 16 23 C 0.05 0.67 7.72 72.67 0.56 1.23 16 24 O -0.38 -7.10 10.39 -148.98 -1.55 -8.65 16 25 H 0.05 1.23 6.69 -2.39 -0.02 1.21 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.05 1.19 5.86 -2.39 -0.01 1.17 16 28 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.08 1.39 7.80 -2.39 -0.02 1.37 16 30 H 0.42 8.93 8.85 -96.74 -0.86 8.07 16 31 H 0.14 4.57 6.78 -2.39 -0.02 4.55 16 32 H 0.14 4.49 6.36 -2.39 -0.02 4.48 16 33 H 0.03 1.33 7.20 -2.39 -0.02 1.32 16 34 H 0.03 1.42 7.57 -2.39 -0.02 1.41 16 35 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.08 2.00 4.65 -2.39 -0.01 1.98 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 41 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -71.42 330.14 -1.37 -72.79 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.11 Total: 21.27 kcal Atomic # 6 Polarization: -56.86 SS G_CDS: 3.12 Total: -53.75 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -0.38 Total: -83.46 kcal Atomic # 8 Polarization: -80.30 SS G_CDS: -5.80 Total: -86.11 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.57 kcal Atomic # 16 Polarization: 83.98 SS G_CDS: -0.30 Total: 83.68 kcal Total: -71.42 -1.37 -72.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157730393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.840 kcal (2) G-P(sol) polarization free energy of solvation -71.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds