Wall clock time and date at job start Tue Mar 31 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.49655 * 2 1 4 4 O 1.42899 * 109.47118 * 59.93512 * 3 2 1 5 5 C 1.53036 * 109.50129 * 120.09788 * 2 1 3 6 6 C 1.53045 * 109.53773 * 58.58544 * 5 2 1 7 7 C 1.52761 * 109.38030 * 61.24322 * 6 5 2 8 8 N 1.46926 * 109.00857 * 305.58926 * 7 6 5 9 9 S 1.65597 * 120.62865 * 233.58633 * 8 7 6 10 10 O 1.42093 * 104.27757 * 153.64847 * 9 8 7 11 11 O 1.42105 * 104.27889 * 25.78888 * 9 8 7 12 12 C 1.81401 * 104.44946 * 269.72002 * 9 8 7 13 13 C 1.53001 * 109.47441 * 180.02562 * 12 9 8 14 14 C 1.50697 * 109.46995 * 180.02562 * 13 12 9 15 15 H 1.07991 * 120.00449 * 359.72153 * 14 13 12 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 13 19 19 H 1.48498 * 109.47416 * 59.99812 * 18 16 14 20 20 H 1.48508 * 109.46609 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46903 * 299.99397 * 18 16 14 22 22 C 1.46926 * 118.74050 * 53.31060 * 8 7 6 23 23 H 1.09004 * 109.46791 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47255 * 300.06516 * 1 2 3 25 25 H 1.09005 * 109.47348 * 60.06809 * 1 2 3 26 26 H 1.08999 * 109.47333 * 179.97438 * 3 2 1 27 27 H 1.09007 * 109.47259 * 299.93767 * 3 2 1 28 28 H 0.96702 * 114.00054 * 180.02562 * 4 3 2 29 29 H 1.08997 * 109.46314 * 178.61350 * 5 2 1 30 30 H 1.09004 * 109.45868 * 298.58543 * 5 2 1 31 31 H 1.08999 * 109.49803 * 181.32270 * 6 5 2 32 32 H 1.08998 * 109.49457 * 301.41566 * 6 5 2 33 33 H 1.08997 * 109.50460 * 185.70605 * 7 6 5 34 34 H 1.09002 * 109.43130 * 65.42511 * 7 6 5 35 35 H 1.08998 * 109.47401 * 59.99842 * 12 9 8 36 36 H 1.09006 * 109.47274 * 300.00142 * 12 9 8 37 37 H 1.08998 * 109.47065 * 59.99498 * 13 12 9 38 38 H 1.09001 * 109.46892 * 299.99762 * 13 12 9 39 39 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.58638 * 66.42939 * 22 8 7 41 41 H 1.08998 * 109.58593 * 186.71702 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 8 1.5633 2.1166 1.1660 5 6 2.0408 -0.7234 1.2481 6 6 1.5031 -2.1562 1.2653 7 6 2.0092 -2.9025 0.0323 8 7 1.6516 -2.1378 -1.1702 9 16 0.8191 -2.8545 -2.4093 10 8 0.1329 -1.7807 -3.0378 11 8 0.1067 -3.9144 -1.7860 12 6 2.1099 -3.5113 -3.5016 13 6 1.4596 -4.2056 -4.6999 14 6 2.5320 -4.7517 -5.6069 15 1 3.5733 -4.6132 -5.3564 16 6 2.1837 -5.4238 -6.7594 17 7 0.9156 -5.5930 -7.0642 18 14 3.5131 -6.0941 -7.8876 19 1 4.3495 -7.0690 -7.1426 20 1 2.8817 -6.7691 -9.0500 21 1 4.3647 -4.9762 -8.3676 22 6 2.0414 -0.7234 -1.2499 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5148 0.8894 25 1 -0.3634 0.5128 -0.8906 26 1 3.1306 1.4419 0.0005 27 1 1.6784 1.9560 -0.8906 28 1 1.8487 3.0382 1.2319 29 1 3.1305 -0.7446 1.2351 30 1 1.6985 -0.1966 2.1388 31 1 1.8481 -2.6634 2.1663 32 1 0.4133 -2.1358 1.2534 33 1 1.5474 -3.8888 -0.0111 34 1 3.0927 -3.0063 0.0906 35 1 2.7201 -4.2286 -2.9528 36 1 2.7390 -2.6935 -3.8534 37 1 0.8497 -3.4880 -5.2486 38 1 0.8304 -5.0234 -4.3484 39 1 0.6706 -6.0661 -7.8748 40 1 3.1275 -0.6458 -1.2982 41 1 1.6028 -0.2731 -2.1403 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161286715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:15 Heat of formation + Delta-G solvation = -139.395358 kcal Electronic energy + Delta-G solvation = -22612.555767 eV Core-core repulsion = 19232.966027 eV Total energy + Delta-G solvation = -3379.589740 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.63946 -36.74093 -36.60293 -35.41628 -33.88943 -33.23019 -31.87015 -31.15530 -27.16850 -26.10195 -25.62089 -24.53126 -22.11735 -21.49207 -19.04419 -18.21059 -17.61564 -17.55852 -16.53811 -15.79464 -15.53712 -15.29426 -14.75680 -14.61202 -14.53966 -14.29597 -13.81914 -13.43308 -13.32806 -12.85114 -12.67685 -12.51245 -11.92731 -11.82237 -11.74164 -11.60399 -11.56328 -11.27479 -11.10939 -11.06901 -10.97089 -10.83519 -10.48877 -10.43862 -10.38007 -10.33249 -10.09469 -9.75234 -9.31872 -8.72528 -8.50605 -6.12786 -4.18584 0.75360 3.01558 3.26688 3.31489 3.33331 3.99469 4.29763 4.38155 4.47460 4.59526 4.68227 4.79918 5.05246 5.06632 5.15588 5.22147 5.23090 5.30543 5.45442 5.49193 5.59372 5.64173 5.69894 5.76128 5.78593 5.87855 5.97342 6.00782 6.12340 6.24371 6.29521 6.44332 6.48700 6.69521 7.29241 7.35419 7.40332 7.79895 8.17107 8.84582 9.46096 10.98217 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.030690 B = 0.003855 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.136943 B = 7261.972092 C = 7393.979723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 C 0.087 3.913 4 O -0.568 6.568 5 C -0.100 4.100 6 C -0.135 4.135 7 C 0.117 3.883 8 N -1.003 6.003 9 S 2.589 3.411 10 O -0.962 6.962 11 O -0.963 6.963 12 C -0.590 4.590 13 C 0.028 3.972 14 C -0.521 4.521 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.128 3.872 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.376 0.624 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.266 0.734 40 H 0.067 0.933 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.695 12.650 16.534 21.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.072 4.072 3 C 0.008 3.992 4 O -0.373 6.373 5 C -0.138 4.138 6 C -0.174 4.174 7 C -0.008 4.008 8 N -0.838 5.838 9 S 2.688 3.312 10 O -0.953 6.953 11 O -0.954 6.954 12 C -0.723 4.723 13 C -0.011 4.011 14 C -0.561 4.561 15 H 0.079 0.921 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.728 3.272 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.201 1.201 22 C 0.002 3.998 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.223 0.777 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.333 11.952 16.456 20.610 hybrid contribution 1.690 0.079 -0.958 1.944 sum 5.023 12.032 15.498 20.253 Atomic orbital electron populations 1.21816 0.93475 1.02149 1.02128 1.20857 0.97379 0.92895 0.96117 1.22136 0.96994 0.92456 0.87589 1.86470 1.77553 1.28738 1.44557 1.21441 0.99890 0.95071 0.97368 1.21862 1.01999 0.95972 0.97559 1.21334 1.00058 0.95359 0.84078 1.57871 1.75929 1.18176 1.31869 1.05737 0.76822 0.74270 0.74374 1.93525 1.71111 1.54011 1.76613 1.93528 1.70008 1.57419 1.74433 1.30503 1.16559 1.11386 1.13834 1.18960 0.96827 0.95730 0.89580 1.20967 0.92504 1.36381 1.06229 0.92105 1.25072 0.95673 0.95907 0.97811 1.69947 1.15841 1.41417 1.25640 0.86524 0.81514 0.79181 0.80014 1.20062 1.21047 1.20082 1.21333 0.99563 0.80522 0.98358 0.92388 0.92015 0.92401 0.93552 0.93243 0.77719 0.92182 0.91077 0.90974 0.91010 0.88758 0.91665 0.86291 0.86330 0.94901 0.94880 0.92455 0.91485 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 7.84 37.16 0.29 -1.46 16 2 C -0.07 -0.77 0.60 -154.39 -0.09 -0.86 16 3 C 0.09 0.76 5.92 37.16 0.22 0.98 16 4 O -0.57 -4.91 12.30 -35.23 -0.43 -5.34 16 5 C -0.10 -1.00 4.59 -26.69 -0.12 -1.12 16 6 C -0.14 -1.42 5.72 -26.83 -0.15 -1.57 16 7 C 0.12 1.37 6.40 -3.93 -0.03 1.35 16 8 N -1.00 -13.78 2.67 -113.76 -0.30 -14.08 16 9 S 2.59 47.21 5.45 -107.50 -0.59 46.62 16 10 O -0.96 -19.78 16.59 -57.54 -0.95 -20.73 16 11 O -0.96 -20.09 16.58 -57.54 -0.95 -21.05 16 12 C -0.59 -11.40 6.12 37.16 0.23 -11.17 16 13 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 14 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 18 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 C 0.13 1.51 5.11 -3.71 -0.02 1.49 16 23 H 0.06 0.81 5.97 -51.93 -0.31 0.50 16 24 H 0.06 0.74 7.68 -51.93 -0.40 0.35 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.38 1.58 9.12 45.56 0.42 1.99 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.73 7.65 -51.93 -0.40 0.34 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.85 6.33 -51.93 -0.33 0.52 16 33 H 0.09 1.19 6.85 -51.93 -0.36 0.83 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.12 2.08 8.14 -51.92 -0.42 1.65 16 36 H 0.12 2.06 8.14 -51.92 -0.42 1.63 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 1.20 6.86 -51.93 -0.36 0.85 16 LS Contribution 335.66 15.07 5.06 5.06 Total: -1.00 -34.83 335.66 -8.60 -43.44 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.92 Total: 0.77 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: -0.22 Total: -25.03 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.43 Total: -39.90 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -2.34 Total: -47.12 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 47.21 SS G_CDS: -0.59 Total: 46.62 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.83 -8.60 -43.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161286715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.958 kcal (2) G-P(sol) polarization free energy of solvation -34.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds