Wall clock time and date at job start Tue Mar 31 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.49655 * 2 1 4 4 O 1.42899 * 109.47118 * 59.93512 * 3 2 1 5 5 C 1.53036 * 109.50129 * 120.09788 * 2 1 3 6 6 C 1.53045 * 109.53773 * 58.58544 * 5 2 1 7 7 C 1.52761 * 109.38030 * 61.24322 * 6 5 2 8 8 N 1.46926 * 109.00857 * 305.58926 * 7 6 5 9 9 S 1.65597 * 120.62865 * 233.58633 * 8 7 6 10 10 O 1.42093 * 104.27757 * 153.64847 * 9 8 7 11 11 O 1.42105 * 104.27889 * 25.78888 * 9 8 7 12 12 C 1.81401 * 104.44946 * 269.72002 * 9 8 7 13 13 C 1.53001 * 109.47441 * 180.02562 * 12 9 8 14 14 C 1.50697 * 109.46995 * 180.02562 * 13 12 9 15 15 H 1.07991 * 120.00449 * 359.72153 * 14 13 12 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 13 19 19 H 1.48498 * 109.47416 * 59.99812 * 18 16 14 20 20 H 1.48508 * 109.46609 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46903 * 299.99397 * 18 16 14 22 22 C 1.46926 * 118.74050 * 53.31060 * 8 7 6 23 23 H 1.09004 * 109.46791 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47255 * 300.06516 * 1 2 3 25 25 H 1.09005 * 109.47348 * 60.06809 * 1 2 3 26 26 H 1.08999 * 109.47333 * 179.97438 * 3 2 1 27 27 H 1.09007 * 109.47259 * 299.93767 * 3 2 1 28 28 H 0.96702 * 114.00054 * 180.02562 * 4 3 2 29 29 H 1.08997 * 109.46314 * 178.61350 * 5 2 1 30 30 H 1.09004 * 109.45868 * 298.58543 * 5 2 1 31 31 H 1.08999 * 109.49803 * 181.32270 * 6 5 2 32 32 H 1.08998 * 109.49457 * 301.41566 * 6 5 2 33 33 H 1.08997 * 109.50460 * 185.70605 * 7 6 5 34 34 H 1.09002 * 109.43130 * 65.42511 * 7 6 5 35 35 H 1.08998 * 109.47401 * 59.99842 * 12 9 8 36 36 H 1.09006 * 109.47274 * 300.00142 * 12 9 8 37 37 H 1.08998 * 109.47065 * 59.99498 * 13 12 9 38 38 H 1.09001 * 109.46892 * 299.99762 * 13 12 9 39 39 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.58638 * 66.42939 * 22 8 7 41 41 H 1.08998 * 109.58593 * 186.71702 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 8 1.5633 2.1166 1.1660 5 6 2.0408 -0.7234 1.2481 6 6 1.5031 -2.1562 1.2653 7 6 2.0092 -2.9025 0.0323 8 7 1.6516 -2.1378 -1.1702 9 16 0.8191 -2.8545 -2.4093 10 8 0.1329 -1.7807 -3.0378 11 8 0.1067 -3.9144 -1.7860 12 6 2.1099 -3.5113 -3.5016 13 6 1.4596 -4.2056 -4.6999 14 6 2.5320 -4.7517 -5.6069 15 1 3.5733 -4.6132 -5.3564 16 6 2.1837 -5.4238 -6.7594 17 7 0.9156 -5.5930 -7.0642 18 14 3.5131 -6.0941 -7.8876 19 1 4.3495 -7.0690 -7.1426 20 1 2.8817 -6.7691 -9.0500 21 1 4.3647 -4.9762 -8.3676 22 6 2.0414 -0.7234 -1.2499 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5148 0.8894 25 1 -0.3634 0.5128 -0.8906 26 1 3.1306 1.4419 0.0005 27 1 1.6784 1.9560 -0.8906 28 1 1.8487 3.0382 1.2319 29 1 3.1305 -0.7446 1.2351 30 1 1.6985 -0.1966 2.1388 31 1 1.8481 -2.6634 2.1663 32 1 0.4133 -2.1358 1.2534 33 1 1.5474 -3.8888 -0.0111 34 1 3.0927 -3.0063 0.0906 35 1 2.7201 -4.2286 -2.9528 36 1 2.7390 -2.6935 -3.8534 37 1 0.8497 -3.4880 -5.2486 38 1 0.8304 -5.0234 -4.3484 39 1 0.6706 -6.0661 -7.8748 40 1 3.1275 -0.6458 -1.2982 41 1 1.6028 -0.2731 -2.1403 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161286715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:14 Heat of formation + Delta-G solvation = -166.541872 kcal Electronic energy + Delta-G solvation = -22613.732929 eV Core-core repulsion = 19232.966027 eV Total energy + Delta-G solvation = -3380.766901 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.50358 -38.24097 -37.40030 -36.98818 -35.90254 -34.16008 -33.13291 -32.75665 -28.12564 -27.60510 -26.85098 -25.53136 -23.53742 -22.86842 -20.20336 -19.36351 -19.01467 -18.36879 -18.24022 -17.14680 -17.05155 -16.55317 -16.14306 -15.76621 -15.53218 -15.29052 -15.04845 -14.82568 -14.42379 -14.20445 -13.76941 -13.74113 -13.50294 -13.22125 -13.18714 -13.00138 -12.90840 -12.80723 -12.71276 -12.31951 -12.24551 -12.15791 -12.00881 -11.76247 -11.70136 -11.33917 -11.21279 -11.07223 -10.73451 -10.64795 -9.84783 -8.26577 -6.41331 -0.72570 1.40682 1.44446 1.52677 1.73822 2.37921 2.85560 3.06502 3.13332 3.43259 3.55551 3.82315 3.95763 4.03702 4.09560 4.21553 4.27557 4.31574 4.45341 4.59644 4.65241 4.70656 4.73681 4.78951 4.87670 4.88792 4.97039 5.07786 5.13913 5.20138 5.25149 5.25362 5.37153 5.44333 5.53242 5.67056 5.69490 6.04839 6.72183 7.01205 7.29067 8.85566 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.030690 B = 0.003855 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.136943 B = 7261.972092 C = 7393.979723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.073 4.073 3 C 0.090 3.910 4 O -0.585 6.585 5 C -0.094 4.094 6 C -0.135 4.135 7 C 0.108 3.892 8 N -0.992 5.992 9 S 2.608 3.392 10 O -0.991 6.991 11 O -0.996 6.996 12 C -0.586 4.586 13 C 0.020 3.980 14 C -0.541 4.541 15 H 0.077 0.923 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.975 3.025 19 H -0.262 1.262 20 H -0.284 1.284 21 H -0.262 1.262 22 C 0.119 3.881 23 H 0.036 0.964 24 H 0.063 0.937 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.396 0.604 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.005 0.995 38 H 0.004 0.996 39 H 0.268 0.732 40 H 0.103 0.897 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.913 13.538 17.690 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.075 4.075 3 C 0.012 3.988 4 O -0.393 6.393 5 C -0.131 4.131 6 C -0.174 4.174 7 C -0.016 4.016 8 N -0.831 5.831 9 S 2.707 3.293 10 O -0.982 6.982 11 O -0.986 6.986 12 C -0.718 4.718 13 C -0.019 4.019 14 C -0.580 4.580 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.575 5.575 18 Si 0.799 3.201 19 H -0.187 1.187 20 H -0.210 1.210 21 H -0.186 1.186 22 C -0.006 4.006 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.245 0.755 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.023 0.977 38 H 0.022 0.978 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.562 12.857 17.617 22.775 hybrid contribution 0.639 -0.129 -1.215 1.378 sum 7.201 12.728 16.402 21.975 Atomic orbital electron populations 1.21800 0.95591 1.00587 1.01547 1.20895 0.95665 0.94767 0.96172 1.22064 0.98209 0.90841 0.87707 1.86415 1.78039 1.30429 1.44404 1.21406 1.01029 0.94098 0.96574 1.21880 1.00809 0.96793 0.97872 1.21634 1.02021 0.94617 0.83312 1.57475 1.75604 1.19128 1.30906 1.04818 0.76548 0.73414 0.74525 1.93480 1.72155 1.54718 1.77801 1.93480 1.71174 1.58885 1.75050 1.30393 1.17207 1.12272 1.11955 1.18820 0.96458 0.94739 0.91850 1.21492 0.93603 1.36178 1.06701 0.90500 1.26150 0.98126 0.96213 0.99779 1.70104 1.18386 1.42547 1.26416 0.85343 0.78365 0.78862 0.77561 1.18682 1.20978 1.18650 1.21638 1.01662 0.78848 0.98456 0.94447 0.91775 0.93739 0.91128 0.93227 0.75458 0.90021 0.91243 0.88583 0.93136 0.90114 0.88284 0.84086 0.83970 0.97682 0.97787 0.92363 0.87860 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 7.84 71.98 0.56 -2.92 16 2 C -0.07 -1.43 0.60 -52.10 -0.03 -1.46 16 3 C 0.09 1.31 5.92 71.98 0.43 1.73 16 4 O -0.58 -8.58 12.30 -148.98 -1.83 -10.41 16 5 C -0.09 -1.58 4.59 30.62 0.14 -1.44 16 6 C -0.13 -2.54 5.72 30.53 0.17 -2.37 16 7 C 0.11 2.31 6.40 86.22 0.55 2.86 16 8 N -0.99 -25.86 2.67 -513.84 -1.37 -27.23 16 9 S 2.61 96.45 5.45 -56.49 -0.31 96.14 16 10 O -0.99 -42.06 16.59 -127.65 -2.12 -44.18 16 11 O -1.00 -42.90 16.58 -127.65 -2.12 -45.02 16 12 C -0.59 -22.42 6.12 71.98 0.44 -21.98 16 13 C 0.02 1.07 4.98 29.85 0.15 1.22 16 14 C -0.54 -30.12 9.11 25.60 0.23 -29.89 16 15 H 0.08 3.92 7.74 -2.92 -0.02 3.89 16 16 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 17 N -0.94 -57.32 13.29 21.45 0.28 -57.03 16 18 Si 0.98 43.16 29.54 68.60 2.03 45.18 16 19 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 22 C 0.12 2.52 5.11 86.36 0.44 2.97 16 23 H 0.04 1.07 5.97 -2.38 -0.01 1.06 16 24 H 0.06 1.54 7.68 -2.39 -0.02 1.52 16 25 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.40 2.23 9.12 -74.06 -0.68 1.55 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.23 7.65 -2.38 -0.02 1.21 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.17 6.33 -2.39 -0.02 1.15 16 33 H 0.08 1.96 6.85 -2.39 -0.02 1.94 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.14 4.71 8.14 -2.39 -0.02 4.69 16 36 H 0.14 4.70 8.14 -2.39 -0.02 4.68 16 37 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 40 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.08 2.01 6.86 -2.39 -0.02 1.99 16 Total: -1.00 -77.68 335.66 -1.54 -79.22 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.34 Total: 14.38 kcal Atomic # 6 Polarization: -54.60 SS G_CDS: 3.55 Total: -51.05 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -1.08 Total: -84.26 kcal Atomic # 8 Polarization: -93.55 SS G_CDS: -6.07 Total: -99.61 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 96.45 SS G_CDS: -0.31 Total: 96.14 kcal Total: -77.68 -1.54 -79.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161286715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.319 kcal (2) G-P(sol) polarization free energy of solvation -77.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds