Wall clock time and date at job start Tue Mar 31 2020 06:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.70662 * 2 1 4 4 C 1.53299 * 109.68417 * 239.46568 * 2 1 3 5 5 O 1.42964 * 109.21844 * 292.58013 * 4 2 1 6 6 C 1.42971 * 114.16565 * 297.41719 * 5 4 2 7 7 C 1.53290 * 109.22278 * 62.57948 * 6 5 4 8 8 N 1.47145 * 109.68446 * 120.53399 * 2 1 3 9 9 S 1.65600 * 120.98761 * 248.91938 * 8 2 1 10 10 O 1.42101 * 104.28139 * 192.40326 * 9 8 2 11 11 O 1.42103 * 104.27183 * 320.26023 * 9 8 2 12 12 C 1.81405 * 104.44876 * 76.32612 * 9 8 2 13 13 C 1.53002 * 109.46894 * 180.02562 * 12 9 8 14 14 C 1.52998 * 109.46910 * 180.02562 * 13 12 9 15 15 C 1.50707 * 109.46726 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00057 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99401 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00222 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99695 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47029 * 89.99924 * 19 17 15 21 21 H 1.48500 * 109.46972 * 209.99429 * 19 17 15 22 22 H 1.48497 * 109.47200 * 329.99978 * 19 17 15 23 23 H 1.08999 * 109.47240 * 299.46181 * 1 2 3 24 24 H 1.09006 * 109.46996 * 59.46783 * 1 2 3 25 25 H 1.09001 * 109.46981 * 179.45981 * 1 2 3 26 26 H 1.09008 * 109.47210 * 188.21896 * 3 2 1 27 27 H 1.09002 * 109.47245 * 308.21865 * 3 2 1 28 28 H 1.08996 * 109.47580 * 68.22179 * 3 2 1 29 29 H 1.09001 * 109.51046 * 52.49972 * 4 2 1 30 30 H 1.09000 * 109.51198 * 172.60636 * 4 2 1 31 31 H 1.08996 * 109.51101 * 182.50860 * 6 5 4 32 32 H 1.09001 * 109.50918 * 302.66003 * 6 5 4 33 33 H 1.08996 * 109.68316 * 187.97241 * 7 6 5 34 34 H 1.09003 * 109.67996 * 67.42154 * 7 6 5 35 35 H 1.08992 * 109.47372 * 300.00653 * 12 9 8 36 36 H 1.08997 * 109.46915 * 60.00667 * 12 9 8 37 37 H 1.09004 * 109.47513 * 300.00776 * 13 12 9 38 38 H 1.09002 * 109.46725 * 60.00091 * 13 12 9 39 39 H 1.08993 * 109.47461 * 299.99987 * 14 13 12 40 40 H 1.08997 * 109.46925 * 60.00532 * 14 13 12 41 41 H 0.97006 * 119.99507 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0459 1.4404 0.0000 4 6 2.0464 -0.7333 -1.2432 5 8 1.7168 -2.1208 -1.1420 6 6 2.3260 -2.7877 -0.0338 7 6 1.8241 -2.1595 1.2713 8 7 2.0256 -0.7039 1.1933 9 16 2.7936 0.1166 2.4096 10 8 3.3699 -0.9048 3.2120 11 8 3.6084 1.0640 1.7330 12 6 1.4564 0.9524 3.3064 13 6 2.0454 1.7547 4.4685 14 6 0.9176 2.4591 5.2252 15 6 1.4978 3.2498 6.3694 16 1 2.5643 3.2502 6.5395 17 6 0.6670 3.9727 7.1990 18 7 -0.6317 3.9726 6.9915 19 14 1.3862 4.9534 8.6169 20 1 1.7094 6.3272 8.1548 21 1 0.3972 5.0230 9.7225 22 1 2.6235 4.2898 9.1004 23 1 -0.3634 0.5054 0.8948 24 1 -0.3633 0.5221 -0.8852 25 1 -0.3633 -1.0276 -0.0097 26 1 3.1261 1.4395 -0.1469 27 1 1.5699 1.9969 -0.8074 28 1 1.8095 1.9111 0.9543 29 1 1.5801 -0.3124 -2.1341 30 1 3.1283 -0.6193 -1.3101 31 1 2.0610 -3.8447 -0.0546 32 1 3.4091 -2.6818 -0.0958 33 1 2.3864 -2.5634 2.1132 34 1 0.7637 -2.3769 1.3993 35 1 0.9308 1.6260 2.6298 36 1 0.7591 0.2096 3.6938 37 1 2.5714 1.0813 5.1452 38 1 2.7425 2.4975 4.0806 39 1 0.3913 3.1324 4.5487 40 1 0.2208 1.7160 5.6130 41 1 -1.2161 4.4815 7.5750 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170888281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:39 Heat of formation + Delta-G solvation = -118.932305 kcal Electronic energy + Delta-G solvation = -22796.924136 eV Core-core repulsion = 19418.221740 eV Total energy + Delta-G solvation = -3378.702396 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.97048 -37.27227 -35.94475 -35.60372 -34.71932 -33.20269 -32.20518 -28.55153 -27.91734 -27.46312 -26.35416 -23.70963 -23.04473 -21.03020 -20.26300 -18.56704 -17.24749 -17.07874 -16.64064 -15.97958 -15.90854 -15.40062 -15.33389 -15.12704 -14.53909 -14.30068 -14.06444 -13.54240 -13.05206 -12.65645 -12.56724 -12.37938 -12.30741 -12.15163 -11.92443 -11.82600 -11.73905 -11.55378 -11.50820 -11.24970 -11.02457 -10.92780 -10.84290 -10.60737 -10.39542 -10.14616 -9.97737 -9.47587 -9.21816 -8.84606 -8.42715 -6.07577 -4.10820 0.38116 2.60823 3.29076 3.35278 3.39314 3.59283 3.91918 4.24082 4.31347 4.40912 4.48938 4.70079 4.80946 4.90259 5.00697 5.06682 5.19085 5.26318 5.28955 5.35919 5.37289 5.44463 5.49652 5.61891 5.67075 5.72467 5.85734 5.96230 6.07783 6.21825 6.31731 6.43400 6.46467 6.83784 6.87474 7.54412 7.64067 7.90189 8.30487 8.95320 9.54040 11.03611 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.031973 B = 0.003819 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.539171 B = 7330.348673 C = 7544.990273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.144 3.856 3 C -0.177 4.177 4 C 0.063 3.937 5 O -0.377 6.377 6 C 0.051 3.949 7 C 0.081 3.919 8 N -0.999 5.999 9 S 2.596 3.404 10 O -0.964 6.964 11 O -0.955 6.955 12 C -0.609 4.609 13 C -0.105 4.105 14 C 0.031 3.969 15 C -0.527 4.527 16 H 0.058 0.942 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.273 1.273 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.526 -11.493 -17.181 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.056 3.944 3 C -0.235 4.235 4 C -0.015 4.015 5 O -0.295 6.295 6 C -0.027 4.027 7 C -0.045 4.045 8 N -0.837 5.837 9 S 2.695 3.305 10 O -0.954 6.954 11 O -0.946 6.946 12 C -0.741 4.741 13 C -0.144 4.144 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.076 0.924 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.118 0.882 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.199 -11.548 -17.092 20.874 hybrid contribution -0.402 0.850 1.159 1.492 sum 2.797 -10.698 -15.933 19.394 Atomic orbital electron populations 1.22154 0.93644 1.03092 1.02707 1.21059 0.94972 0.92626 0.85714 1.22656 1.04696 0.92694 1.03487 1.22963 0.99993 0.81600 0.96949 1.87926 1.72075 1.21870 1.47665 1.22918 0.97325 0.96854 0.85618 1.22146 1.02686 0.79634 1.00030 1.58107 1.76875 1.15772 1.32926 1.05514 0.76790 0.74497 0.73686 1.93525 1.75511 1.56719 1.69652 1.93617 1.65945 1.63616 1.71384 1.30656 1.18179 1.12883 1.12347 1.21504 1.01243 0.98134 0.93555 1.19058 0.92163 0.95039 0.94455 1.21248 0.93707 1.29023 1.12531 0.92379 1.25017 0.94825 0.96646 0.97843 1.69960 1.02828 1.41771 1.38843 0.86554 0.78949 0.80429 0.81878 1.20548 1.21147 1.19730 0.91849 0.91307 0.91435 0.88189 0.90738 0.91673 0.87858 0.92333 0.87747 0.92629 0.87437 0.90579 0.85433 0.85426 0.91665 0.91600 0.96131 0.96128 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 8.53 37.16 0.32 -1.15 16 2 C 0.14 1.51 1.06 -131.31 -0.14 1.37 16 3 C -0.18 -1.96 6.92 37.16 0.26 -1.71 16 4 C 0.06 0.60 5.66 37.31 0.21 0.81 16 5 O -0.38 -3.90 10.37 -35.23 -0.37 -4.27 16 6 C 0.05 0.46 6.99 37.31 0.26 0.73 16 7 C 0.08 0.82 6.31 -3.53 -0.02 0.80 16 8 N -1.00 -11.89 2.95 -99.30 -0.29 -12.19 16 9 S 2.60 38.97 4.86 -107.50 -0.52 38.45 16 10 O -0.96 -16.87 16.33 -57.54 -0.94 -17.81 16 11 O -0.96 -15.96 13.67 -57.54 -0.79 -16.75 16 12 C -0.61 -9.56 5.92 37.16 0.22 -9.34 16 13 C -0.10 -2.13 5.16 -26.73 -0.14 -2.27 16 14 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 15 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 19 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.63 7.23 -51.93 -0.38 0.26 16 26 H 0.10 1.24 6.46 -51.92 -0.34 0.90 16 27 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 28 H 0.06 0.79 4.87 -51.93 -0.25 0.54 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.11 1.12 6.63 -51.93 -0.34 0.78 16 34 H 0.08 0.67 7.67 -51.93 -0.40 0.27 16 35 H 0.13 1.80 6.68 -51.93 -0.35 1.46 16 36 H 0.13 1.83 8.14 -51.93 -0.42 1.41 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 331.66 15.07 5.00 5.00 Total: -1.00 -33.63 331.66 -8.44 -42.07 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.67 Total: -1.54 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: 0.42 Total: -23.70 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.44 Total: -37.97 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -2.09 Total: -38.82 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 38.97 SS G_CDS: -0.52 Total: 38.45 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.63 -8.44 -42.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170888281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.863 kcal (2) G-P(sol) polarization free energy of solvation -33.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds