Wall clock time and date at job start Tue Mar 31 2020 06:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.70662 * 2 1 4 4 C 1.53299 * 109.68417 * 239.46568 * 2 1 3 5 5 O 1.42964 * 109.21844 * 292.58013 * 4 2 1 6 6 C 1.42971 * 114.16565 * 297.41719 * 5 4 2 7 7 C 1.53290 * 109.22278 * 62.57948 * 6 5 4 8 8 N 1.47145 * 109.68446 * 120.53399 * 2 1 3 9 9 S 1.65600 * 120.98761 * 248.91938 * 8 2 1 10 10 O 1.42101 * 104.28139 * 192.40326 * 9 8 2 11 11 O 1.42103 * 104.27183 * 320.26023 * 9 8 2 12 12 C 1.81405 * 104.44876 * 76.32612 * 9 8 2 13 13 C 1.53002 * 109.46894 * 180.02562 * 12 9 8 14 14 C 1.52998 * 109.46910 * 180.02562 * 13 12 9 15 15 C 1.50707 * 109.46726 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00057 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99401 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00222 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99695 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47029 * 89.99924 * 19 17 15 21 21 H 1.48500 * 109.46972 * 209.99429 * 19 17 15 22 22 H 1.48497 * 109.47200 * 329.99978 * 19 17 15 23 23 H 1.08999 * 109.47240 * 299.46181 * 1 2 3 24 24 H 1.09006 * 109.46996 * 59.46783 * 1 2 3 25 25 H 1.09001 * 109.46981 * 179.45981 * 1 2 3 26 26 H 1.09008 * 109.47210 * 188.21896 * 3 2 1 27 27 H 1.09002 * 109.47245 * 308.21865 * 3 2 1 28 28 H 1.08996 * 109.47580 * 68.22179 * 3 2 1 29 29 H 1.09001 * 109.51046 * 52.49972 * 4 2 1 30 30 H 1.09000 * 109.51198 * 172.60636 * 4 2 1 31 31 H 1.08996 * 109.51101 * 182.50860 * 6 5 4 32 32 H 1.09001 * 109.50918 * 302.66003 * 6 5 4 33 33 H 1.08996 * 109.68316 * 187.97241 * 7 6 5 34 34 H 1.09003 * 109.67996 * 67.42154 * 7 6 5 35 35 H 1.08992 * 109.47372 * 300.00653 * 12 9 8 36 36 H 1.08997 * 109.46915 * 60.00667 * 12 9 8 37 37 H 1.09004 * 109.47513 * 300.00776 * 13 12 9 38 38 H 1.09002 * 109.46725 * 60.00091 * 13 12 9 39 39 H 1.08993 * 109.47461 * 299.99987 * 14 13 12 40 40 H 1.08997 * 109.46925 * 60.00532 * 14 13 12 41 41 H 0.97006 * 119.99507 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0459 1.4404 0.0000 4 6 2.0464 -0.7333 -1.2432 5 8 1.7168 -2.1208 -1.1420 6 6 2.3260 -2.7877 -0.0338 7 6 1.8241 -2.1595 1.2713 8 7 2.0256 -0.7039 1.1933 9 16 2.7936 0.1166 2.4096 10 8 3.3699 -0.9048 3.2120 11 8 3.6084 1.0640 1.7330 12 6 1.4564 0.9524 3.3064 13 6 2.0454 1.7547 4.4685 14 6 0.9176 2.4591 5.2252 15 6 1.4978 3.2498 6.3694 16 1 2.5643 3.2502 6.5395 17 6 0.6670 3.9727 7.1990 18 7 -0.6317 3.9726 6.9915 19 14 1.3862 4.9534 8.6169 20 1 1.7094 6.3272 8.1548 21 1 0.3972 5.0230 9.7225 22 1 2.6235 4.2898 9.1004 23 1 -0.3634 0.5054 0.8948 24 1 -0.3633 0.5221 -0.8852 25 1 -0.3633 -1.0276 -0.0097 26 1 3.1261 1.4395 -0.1469 27 1 1.5699 1.9969 -0.8074 28 1 1.8095 1.9111 0.9543 29 1 1.5801 -0.3124 -2.1341 30 1 3.1283 -0.6193 -1.3101 31 1 2.0610 -3.8447 -0.0546 32 1 3.4091 -2.6818 -0.0958 33 1 2.3864 -2.5634 2.1132 34 1 0.7637 -2.3769 1.3993 35 1 0.9308 1.6260 2.6298 36 1 0.7591 0.2096 3.6938 37 1 2.5714 1.0813 5.1452 38 1 2.7425 2.4975 4.0806 39 1 0.3913 3.1324 4.5487 40 1 0.2208 1.7160 5.6130 41 1 -1.2161 4.4815 7.5750 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170888281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:38 Heat of formation + Delta-G solvation = -142.719781 kcal Electronic energy + Delta-G solvation = -22797.955638 eV Core-core repulsion = 19418.221740 eV Total energy + Delta-G solvation = -3379.733898 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.76874 -38.50718 -37.15699 -36.56805 -36.48751 -34.26453 -33.97365 -29.73745 -29.36161 -28.27880 -27.17810 -25.58592 -23.83422 -22.53749 -21.48974 -19.69076 -18.66009 -18.20867 -17.96402 -17.31289 -16.90415 -16.52052 -16.37823 -16.21496 -16.03927 -15.69609 -15.01951 -14.53008 -14.36040 -14.10329 -13.99144 -13.67107 -13.42722 -13.29322 -13.09340 -12.97719 -12.88260 -12.82244 -12.72772 -12.61713 -12.42078 -12.27551 -12.15736 -11.88977 -11.78111 -11.45162 -11.37051 -11.07642 -10.99242 -10.59630 -9.78464 -8.24581 -6.36012 -0.83475 1.39218 1.39972 1.51406 1.54073 2.38367 2.70461 2.89572 3.08818 3.10139 3.42078 3.65818 3.75770 3.78536 3.95027 4.04936 4.18025 4.28901 4.32957 4.49452 4.57343 4.63872 4.64032 4.68320 4.75872 4.85941 4.89574 4.94763 4.99099 5.00934 5.14970 5.33973 5.42050 5.47521 5.57783 5.60333 5.76426 6.15016 6.16811 6.79215 7.33566 8.86941 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.031973 B = 0.003819 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.539171 B = 7330.348673 C = 7544.990273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 C -0.182 4.182 4 C 0.062 3.938 5 O -0.384 6.384 6 C 0.050 3.950 7 C 0.073 3.927 8 N -0.994 5.994 9 S 2.618 3.382 10 O -0.989 6.989 11 O -0.973 6.973 12 C -0.611 4.611 13 C -0.104 4.104 14 C 0.032 3.968 15 C -0.554 4.554 16 H 0.060 0.940 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.963 3.037 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.265 1.265 23 H 0.056 0.944 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.050 0.950 29 H 0.128 0.872 30 H 0.054 0.946 31 H 0.131 0.869 32 H 0.052 0.948 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.003 0.997 40 H 0.001 0.999 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.517 -11.940 -18.182 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.053 3.947 3 C -0.240 4.240 4 C -0.016 4.016 5 O -0.302 6.302 6 C -0.028 4.028 7 C -0.052 4.052 8 N -0.834 5.834 9 S 2.717 3.283 10 O -0.980 6.980 11 O -0.963 6.963 12 C -0.741 4.741 13 C -0.143 4.143 14 C -0.006 4.006 15 C -0.592 4.592 16 H 0.078 0.922 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.788 3.212 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.189 1.189 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.120 0.880 28 H 0.069 0.931 29 H 0.146 0.854 30 H 0.072 0.928 31 H 0.149 0.851 32 H 0.070 0.930 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.022 0.978 40 H 0.020 0.980 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.195 -11.990 -18.084 21.932 hybrid contribution -0.428 0.950 1.394 1.740 sum 2.767 -11.040 -16.691 20.202 Atomic orbital electron populations 1.22161 0.92477 1.03442 1.03372 1.21272 0.95816 0.92231 0.85358 1.22678 1.04059 0.93509 1.03756 1.23072 1.00021 0.81344 0.97173 1.87923 1.72207 1.22138 1.47939 1.23053 0.97108 0.98068 0.84571 1.22394 1.03806 0.78299 1.00707 1.57891 1.76756 1.16538 1.32225 1.04658 0.76280 0.73836 0.73567 1.93486 1.76197 1.57441 1.70860 1.93604 1.66696 1.64434 1.71604 1.30639 1.19093 1.13154 1.11220 1.21299 0.99690 0.98444 0.94847 1.18946 0.93207 0.94361 0.94067 1.21723 0.94076 1.29675 1.13688 0.92185 1.25934 0.95184 0.97692 1.00640 1.70073 1.04143 1.42641 1.40067 0.85471 0.78400 0.78971 0.78391 1.19624 1.20478 1.18905 0.92536 0.89338 0.91237 0.89691 0.88038 0.93112 0.85437 0.92783 0.85104 0.93010 0.87929 0.88924 0.83983 0.84182 0.91811 0.91464 0.97848 0.98029 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 8.53 71.98 0.61 -1.92 16 2 C 0.14 2.67 1.06 3.58 0.00 2.68 16 3 C -0.18 -3.78 6.92 71.98 0.50 -3.28 16 4 C 0.06 1.03 5.66 72.08 0.41 1.44 16 5 O -0.38 -6.94 10.37 -148.98 -1.54 -8.48 16 6 C 0.05 0.80 6.99 72.08 0.50 1.30 16 7 C 0.07 1.35 6.31 86.35 0.54 1.90 16 8 N -0.99 -22.40 2.95 -468.06 -1.38 -23.78 16 9 S 2.62 77.70 4.86 -56.49 -0.27 77.42 16 10 O -0.99 -34.47 16.33 -127.65 -2.08 -36.56 16 11 O -0.97 -32.39 13.67 -127.65 -1.75 -34.14 16 12 C -0.61 -19.13 5.92 71.98 0.43 -18.70 16 13 C -0.10 -4.28 5.16 30.59 0.16 -4.13 16 14 C 0.03 1.69 4.97 29.85 0.15 1.84 16 15 C -0.55 -31.64 9.11 25.60 0.23 -31.41 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.00 0.22 5.46 84.66 0.46 0.68 16 18 N -0.93 -55.77 13.29 21.45 0.28 -55.48 16 19 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 23 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.07 1.11 7.23 -2.39 -0.02 1.10 16 26 H 0.08 2.04 6.46 -2.38 -0.02 2.02 16 27 H 0.10 1.50 8.13 -2.39 -0.02 1.49 16 28 H 0.05 1.19 4.87 -2.39 -0.01 1.18 16 29 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 31 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 2.03 6.63 -2.39 -0.02 2.02 16 34 H 0.09 1.42 7.67 -2.39 -0.02 1.40 16 35 H 0.14 3.99 6.68 -2.39 -0.02 3.97 16 36 H 0.14 3.98 8.14 -2.39 -0.02 3.96 16 37 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 38 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 Total: -1.00 -72.04 331.66 0.28 -71.76 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 1.00 Total: 12.69 kcal Atomic # 6 Polarization: -53.60 SS G_CDS: 4.00 Total: -49.60 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -1.10 Total: -79.26 kcal Atomic # 8 Polarization: -73.81 SS G_CDS: -5.37 Total: -79.18 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 77.70 SS G_CDS: -0.27 Total: 77.42 kcal Total: -72.04 0.28 -71.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170888281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.964 kcal (2) G-P(sol) polarization free energy of solvation -72.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds