Wall clock time and date at job start Tue Mar 31 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 110.78115 * 2 1 4 4 C 1.55163 * 110.72231 * 236.76291 * 2 1 3 5 5 C 1.54907 * 101.58113 * 206.13619 * 4 2 1 6 6 N 1.47421 * 104.83299 * 37.00796 * 5 4 2 7 7 C 1.34776 * 125.64701 * 155.90909 * 6 5 4 8 8 O 1.21595 * 119.99951 * 175.97828 * 7 6 5 9 9 C 1.47531 * 120.00310 * 355.97763 * 7 6 5 10 10 C 1.39674 * 120.19263 * 36.01506 * 9 7 6 11 11 C 1.37831 * 119.91627 * 179.72332 * 10 9 7 12 12 C 1.38583 * 120.32111 * 0.54940 * 11 10 9 13 13 C 1.38026 * 120.40350 * 359.72713 * 12 11 10 14 14 C 1.38837 * 120.07186 * 359.97438 * 13 12 11 15 15 O 1.35517 * 120.15970 * 180.02562 * 14 13 12 16 16 C 1.34810 * 117.00153 * 5.41614 * 15 14 13 17 17 H 1.08002 * 119.99942 * 354.96231 * 16 15 14 18 18 C 1.38693 * 120.00272 * 174.96306 * 16 15 14 19 19 N 1.31522 * 120.00248 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99871 * 359.97438 * 18 16 15 21 21 H 1.48509 * 109.47195 * 89.99941 * 20 18 16 22 22 H 1.48502 * 109.47278 * 210.00042 * 20 18 16 23 23 H 1.48498 * 109.47151 * 330.00544 * 20 18 16 24 24 C 1.47016 * 108.70532 * 335.87032 * 6 5 4 25 25 H 1.08993 * 109.47140 * 183.23833 * 1 2 3 26 26 H 1.08998 * 109.46830 * 303.24490 * 1 2 3 27 27 H 1.09004 * 109.46601 * 63.23817 * 1 2 3 28 28 H 0.96696 * 114.00163 * 56.76015 * 3 2 1 29 29 H 1.08993 * 111.00323 * 88.05781 * 4 2 1 30 30 H 1.09006 * 110.99807 * 324.20667 * 4 2 1 31 31 H 1.09000 * 110.36732 * 155.84705 * 5 4 2 32 32 H 1.08994 * 110.36498 * 278.16750 * 5 4 2 33 33 H 1.07992 * 120.03986 * 359.97438 * 10 9 7 34 34 H 1.07997 * 119.83620 * 180.28004 * 11 10 9 35 35 H 1.08000 * 119.79329 * 179.73861 * 12 11 10 36 36 H 1.07998 * 119.96127 * 180.02562 * 13 12 11 37 37 H 0.97000 * 119.99848 * 180.02562 * 19 18 16 38 38 H 1.08994 * 109.88322 * 120.47901 * 24 6 5 39 39 H 1.09004 * 109.88280 * 241.49299 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0370 1.3360 0.0000 4 6 2.0790 -0.7954 -1.2138 5 6 3.4633 -1.2498 -0.6875 6 7 3.2445 -1.5507 0.7390 7 6 3.9923 -2.3836 1.4897 8 8 3.7638 -2.5013 2.6782 9 6 5.0881 -3.1524 0.8696 10 6 5.8539 -2.5852 -0.1516 11 6 6.8801 -3.3065 -0.7230 12 6 7.1494 -4.5976 -0.2972 13 6 6.3973 -5.1731 0.7069 14 6 5.3638 -4.4593 1.2983 15 8 4.6246 -5.0224 2.2847 16 6 5.0136 -6.2361 2.7241 17 1 5.8289 -6.7508 2.2375 18 6 4.3669 -6.8237 3.8012 19 7 4.7461 -8.0080 4.2296 20 14 2.9572 -5.9332 4.6433 21 1 1.6763 -6.3047 3.9901 22 1 2.9127 -6.3203 6.0763 23 1 3.1618 -4.4665 4.5329 24 6 2.0761 -0.7912 1.2072 25 1 -0.3633 -1.0260 0.0580 26 1 -0.3633 0.5634 0.8595 27 1 -0.3633 0.4628 -0.9176 28 1 1.7239 1.8756 0.7388 29 1 2.1850 -0.1518 -2.0870 30 1 1.4452 -1.6536 -1.4375 31 1 3.7961 -2.1426 -1.2169 32 1 4.1931 -0.4479 -0.7985 33 1 5.6449 -1.5813 -0.4901 34 1 7.4743 -2.8650 -1.5093 35 1 7.9527 -5.1566 -0.7538 36 1 6.6137 -6.1796 1.0335 37 1 4.2935 -8.4191 4.9827 38 1 1.3130 -1.4758 1.5775 39 1 2.3736 -0.1043 1.9996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177408771.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:51 Heat of formation + Delta-G solvation = -72.495444 kcal Electronic energy + Delta-G solvation = -23639.399212 eV Core-core repulsion = 20127.266519 eV Total energy + Delta-G solvation = -3512.132693 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.29649 -39.17141 -37.67760 -36.53715 -35.29404 -32.45490 -31.94079 -30.52804 -29.67695 -29.20605 -26.71400 -25.25873 -23.85842 -22.25412 -21.44496 -20.60018 -19.49729 -17.99710 -17.47978 -17.04495 -16.51335 -15.55057 -15.28456 -14.93125 -14.67637 -14.42250 -14.14185 -13.93165 -13.75165 -13.62020 -13.35816 -13.04779 -12.54680 -12.49951 -12.31019 -12.20626 -12.05400 -11.75725 -11.54925 -11.37055 -11.21873 -10.87656 -10.79674 -10.61841 -10.31934 -10.08142 -9.62193 -9.15985 -8.90218 -8.40062 -8.34090 -7.48333 -6.47018 -4.12963 1.64032 2.17737 3.21544 3.29097 3.31415 3.44532 3.62949 3.84434 4.27495 4.32454 4.42106 4.44747 4.63456 4.71445 5.05882 5.08253 5.12602 5.17347 5.38125 5.42560 5.48134 5.56497 5.63499 5.67222 5.72934 5.80506 5.88256 5.90261 5.95160 6.06993 6.36618 6.46823 6.62936 6.86839 7.01166 7.15532 7.38854 7.48025 7.67321 7.85482 7.95019 8.74971 8.88309 9.49647 10.58571 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.005780 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.842004 B = 4843.008179 C = 6304.814875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.115 3.885 3 O -0.551 6.551 4 C -0.121 4.121 5 C 0.103 3.897 6 N -0.622 5.622 7 C 0.583 3.417 8 O -0.520 6.520 9 C -0.217 4.217 10 C -0.048 4.048 11 C -0.218 4.218 12 C -0.053 4.053 13 C -0.225 4.225 14 C 0.201 3.799 15 O -0.182 6.182 16 C -0.394 4.394 17 H 0.109 0.891 18 C 0.072 3.928 19 N -0.871 5.871 20 Si 0.890 3.110 21 H -0.275 1.275 22 H -0.283 1.283 23 H -0.235 1.235 24 C 0.087 3.913 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.378 0.622 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.139 0.861 37 H 0.281 0.719 38 H 0.072 0.928 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.255 14.942 -11.733 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.074 3.926 3 O -0.357 6.357 4 C -0.159 4.159 5 C -0.020 4.020 6 N -0.359 5.359 7 C 0.375 3.625 8 O -0.395 6.395 9 C -0.221 4.221 10 C -0.067 4.067 11 C -0.237 4.237 12 C -0.071 4.071 13 C -0.244 4.244 14 C 0.144 3.856 15 O -0.083 6.083 16 C -0.469 4.469 17 H 0.126 0.874 18 C -0.133 4.133 19 N -0.507 5.507 20 Si 0.714 3.286 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.158 1.158 24 C -0.036 4.036 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.226 0.774 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.156 0.844 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.275 14.466 -11.222 19.054 hybrid contribution -0.735 0.237 0.907 1.191 sum -6.010 14.703 -10.315 18.939 Atomic orbital electron populations 1.22340 0.94185 1.03394 1.02833 1.22174 0.92675 0.82675 0.95110 1.86533 1.73906 1.22647 1.52645 1.22878 0.96695 0.99362 0.96961 1.22474 0.96896 1.00780 0.81893 1.48278 1.30569 1.45906 1.11101 1.17953 0.81170 0.77745 0.85646 1.90830 1.69698 1.64277 1.14704 1.18713 1.03701 0.94330 1.05402 1.21028 0.94140 0.98606 0.92923 1.20566 1.01984 0.96131 1.05032 1.20970 0.97010 0.94564 0.94576 1.21259 0.99549 1.02386 1.01245 1.18947 0.89006 0.89947 0.87708 1.83661 1.47182 1.33046 1.44451 1.20860 1.19748 0.90783 1.15509 0.87377 1.24458 0.98325 0.95236 0.95289 1.69631 1.40780 1.14415 1.25869 0.86350 0.81025 0.83259 0.77930 1.20074 1.20851 1.15802 1.22560 0.88964 0.95412 0.96678 0.90952 0.91916 0.91280 0.77407 0.89036 0.89146 0.89659 0.91134 0.86073 0.86919 0.86797 0.84382 0.90858 0.90929 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 8.83 37.16 0.33 -0.99 16 2 C 0.11 1.15 1.28 -88.78 -0.11 1.04 16 3 O -0.55 -5.40 13.11 -35.23 -0.46 -5.86 16 4 C -0.12 -1.20 6.26 -24.58 -0.15 -1.35 16 5 C 0.10 1.28 5.12 -2.53 -0.01 1.27 16 6 N -0.62 -10.27 3.33 -171.76 -0.57 -10.84 16 7 C 0.58 12.55 7.39 -12.47 -0.09 12.46 16 8 O -0.52 -13.47 16.32 -12.03 -0.20 -13.66 16 9 C -0.22 -4.57 5.53 -104.81 -0.58 -5.15 16 10 C -0.05 -0.81 7.91 -39.19 -0.31 -1.12 16 11 C -0.22 -3.44 10.03 -39.60 -0.40 -3.84 16 12 C -0.05 -0.91 10.03 -39.53 -0.40 -1.31 16 13 C -0.23 -4.80 9.16 -39.44 -0.36 -5.16 16 14 C 0.20 4.81 6.63 -38.60 -0.26 4.55 16 15 O -0.18 -5.06 7.26 -16.49 -0.12 -5.18 16 16 C -0.39 -11.35 9.95 30.90 0.31 -11.04 16 17 H 0.11 3.10 5.44 -52.49 -0.29 2.81 16 18 C 0.07 2.08 5.49 -17.52 -0.10 1.99 16 19 N -0.87 -25.45 13.96 55.48 0.77 -24.67 16 20 Si 0.89 23.00 28.62 -169.99 -4.86 18.13 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.24 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.09 1.20 6.23 -3.07 -0.02 1.18 16 25 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.38 2.35 9.07 45.56 0.41 2.76 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.83 8.05 -51.93 -0.42 0.42 16 31 H 0.09 1.07 6.60 -51.93 -0.34 0.72 16 32 H 0.07 0.82 7.23 -51.93 -0.38 0.45 16 33 H 0.12 1.68 5.44 -52.49 -0.29 1.40 16 34 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.14 3.04 5.64 -52.49 -0.30 2.75 16 37 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.07 1.04 7.76 -51.93 -0.40 0.64 16 39 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 LS Contribution 323.95 15.07 4.88 4.88 Total: -1.00 -34.60 323.95 -6.79 -41.39 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -4.08 Total: 3.28 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -2.15 Total: -7.47 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.20 Total: -35.51 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.78 Total: -24.70 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.86 Total: 18.13 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.60 -6.79 -41.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177408771.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.107 kcal (2) G-P(sol) polarization free energy of solvation -34.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds