Wall clock time and date at job start Tue Mar 31 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 110.78115 * 2 1 4 4 C 1.55163 * 110.72231 * 236.76291 * 2 1 3 5 5 C 1.54907 * 101.58113 * 206.13619 * 4 2 1 6 6 N 1.47421 * 104.83299 * 37.00796 * 5 4 2 7 7 C 1.34776 * 125.64701 * 155.90909 * 6 5 4 8 8 O 1.21595 * 119.99951 * 175.97828 * 7 6 5 9 9 C 1.47531 * 120.00310 * 355.97763 * 7 6 5 10 10 C 1.39674 * 120.19263 * 36.01506 * 9 7 6 11 11 C 1.37831 * 119.91627 * 179.72332 * 10 9 7 12 12 C 1.38583 * 120.32111 * 0.54940 * 11 10 9 13 13 C 1.38026 * 120.40350 * 359.72713 * 12 11 10 14 14 C 1.38837 * 120.07186 * 359.97438 * 13 12 11 15 15 O 1.35517 * 120.15970 * 180.02562 * 14 13 12 16 16 C 1.34810 * 117.00153 * 5.41614 * 15 14 13 17 17 H 1.08002 * 119.99942 * 354.96231 * 16 15 14 18 18 C 1.38693 * 120.00272 * 174.96306 * 16 15 14 19 19 N 1.31522 * 120.00248 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99871 * 359.97438 * 18 16 15 21 21 H 1.48509 * 109.47195 * 89.99941 * 20 18 16 22 22 H 1.48502 * 109.47278 * 210.00042 * 20 18 16 23 23 H 1.48498 * 109.47151 * 330.00544 * 20 18 16 24 24 C 1.47016 * 108.70532 * 335.87032 * 6 5 4 25 25 H 1.08993 * 109.47140 * 183.23833 * 1 2 3 26 26 H 1.08998 * 109.46830 * 303.24490 * 1 2 3 27 27 H 1.09004 * 109.46601 * 63.23817 * 1 2 3 28 28 H 0.96696 * 114.00163 * 56.76015 * 3 2 1 29 29 H 1.08993 * 111.00323 * 88.05781 * 4 2 1 30 30 H 1.09006 * 110.99807 * 324.20667 * 4 2 1 31 31 H 1.09000 * 110.36732 * 155.84705 * 5 4 2 32 32 H 1.08994 * 110.36498 * 278.16750 * 5 4 2 33 33 H 1.07992 * 120.03986 * 359.97438 * 10 9 7 34 34 H 1.07997 * 119.83620 * 180.28004 * 11 10 9 35 35 H 1.08000 * 119.79329 * 179.73861 * 12 11 10 36 36 H 1.07998 * 119.96127 * 180.02562 * 13 12 11 37 37 H 0.97000 * 119.99848 * 180.02562 * 19 18 16 38 38 H 1.08994 * 109.88322 * 120.47901 * 24 6 5 39 39 H 1.09004 * 109.88280 * 241.49299 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0370 1.3360 0.0000 4 6 2.0790 -0.7954 -1.2138 5 6 3.4633 -1.2498 -0.6875 6 7 3.2445 -1.5507 0.7390 7 6 3.9923 -2.3836 1.4897 8 8 3.7638 -2.5013 2.6782 9 6 5.0881 -3.1524 0.8696 10 6 5.8539 -2.5852 -0.1516 11 6 6.8801 -3.3065 -0.7230 12 6 7.1494 -4.5976 -0.2972 13 6 6.3973 -5.1731 0.7069 14 6 5.3638 -4.4593 1.2983 15 8 4.6246 -5.0224 2.2847 16 6 5.0136 -6.2361 2.7241 17 1 5.8289 -6.7508 2.2375 18 6 4.3669 -6.8237 3.8012 19 7 4.7461 -8.0080 4.2296 20 14 2.9572 -5.9332 4.6433 21 1 1.6763 -6.3047 3.9901 22 1 2.9127 -6.3203 6.0763 23 1 3.1618 -4.4665 4.5329 24 6 2.0761 -0.7912 1.2072 25 1 -0.3633 -1.0260 0.0580 26 1 -0.3633 0.5634 0.8595 27 1 -0.3633 0.4628 -0.9176 28 1 1.7239 1.8756 0.7388 29 1 2.1850 -0.1518 -2.0870 30 1 1.4452 -1.6536 -1.4375 31 1 3.7961 -2.1426 -1.2169 32 1 4.1931 -0.4479 -0.7985 33 1 5.6449 -1.5813 -0.4901 34 1 7.4743 -2.8650 -1.5093 35 1 7.9527 -5.1566 -0.7538 36 1 6.6137 -6.1796 1.0335 37 1 4.2935 -8.4191 4.9827 38 1 1.3130 -1.4758 1.5775 39 1 2.3736 -0.1043 1.9996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177408771.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:48 Heat of formation + Delta-G solvation = -98.326896 kcal Electronic energy + Delta-G solvation = -23640.519348 eV Core-core repulsion = 20127.266519 eV Total energy + Delta-G solvation = -3513.252829 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.69248 -40.60323 -39.11783 -38.20169 -36.39832 -34.54672 -33.06452 -31.85952 -30.90621 -30.56612 -27.90463 -27.15216 -25.10341 -23.54602 -23.06478 -21.47825 -20.97945 -19.92176 -18.96745 -18.25262 -17.94007 -16.94323 -16.79311 -16.34747 -16.04130 -15.76097 -15.66235 -15.39361 -15.08720 -15.07186 -14.72441 -14.35203 -14.11262 -14.00382 -13.76643 -13.37665 -13.15120 -12.92849 -12.84774 -12.69139 -12.60537 -12.36437 -12.29372 -12.06764 -11.58046 -11.51285 -11.17735 -10.99952 -10.79542 -9.92239 -9.71240 -9.17091 -8.60062 -6.29562 0.08530 0.60502 1.19941 1.23857 1.52991 1.76725 1.98321 2.24974 2.70247 2.93029 3.09635 3.11499 3.37877 3.56165 3.78041 3.85419 4.00200 4.22437 4.23144 4.31004 4.47572 4.51169 4.54188 4.60636 4.68242 4.76375 4.80727 4.93096 5.01807 5.03692 5.12795 5.22237 5.26259 5.36636 5.45677 5.60365 5.66907 5.81893 6.12940 6.41738 6.76161 6.78920 7.17686 7.53750 8.50600 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.005780 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.842004 B = 4843.008179 C = 6304.814875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.129 3.871 3 O -0.558 6.558 4 C -0.116 4.116 5 C 0.092 3.908 6 N -0.616 5.616 7 C 0.571 3.429 8 O -0.581 6.581 9 C -0.225 4.225 10 C -0.040 4.040 11 C -0.183 4.183 12 C -0.043 4.043 13 C -0.245 4.245 14 C 0.159 3.841 15 O -0.225 6.225 16 C -0.400 4.400 17 H 0.094 0.906 18 C 0.026 3.974 19 N -0.910 5.910 20 Si 0.946 3.054 21 H -0.268 1.268 22 H -0.263 1.263 23 H -0.270 1.270 24 C 0.076 3.924 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.393 0.607 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.160 0.840 34 H 0.169 0.831 35 H 0.154 0.846 36 H 0.118 0.882 37 H 0.286 0.714 38 H 0.059 0.941 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.945 18.050 -15.455 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.087 3.913 3 O -0.366 6.366 4 C -0.153 4.153 5 C -0.029 4.029 6 N -0.350 5.350 7 C 0.363 3.637 8 O -0.461 6.461 9 C -0.229 4.229 10 C -0.058 4.058 11 C -0.201 4.201 12 C -0.061 4.061 13 C -0.264 4.264 14 C 0.107 3.893 15 O -0.130 6.130 16 C -0.477 4.477 17 H 0.111 0.889 18 C -0.174 4.174 19 N -0.550 5.550 20 Si 0.770 3.230 21 H -0.193 1.193 22 H -0.187 1.187 23 H -0.195 1.195 24 C -0.047 4.047 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.244 0.756 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.177 0.823 34 H 0.186 0.814 35 H 0.172 0.828 36 H 0.135 0.865 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.971 17.632 -15.026 23.693 hybrid contribution -0.648 -0.399 1.708 1.870 sum -5.619 17.233 -13.318 22.492 Atomic orbital electron populations 1.22309 0.92219 1.03553 1.04213 1.22061 0.93855 0.82385 0.92967 1.86496 1.74310 1.22279 1.53519 1.22932 0.94922 0.99982 0.97474 1.22815 0.99340 1.01502 0.79253 1.48321 1.29955 1.44093 1.12664 1.18200 0.81835 0.78388 0.85291 1.90795 1.71477 1.66509 1.17360 1.19098 1.04276 0.93316 1.06198 1.21504 0.93118 1.00122 0.91041 1.21246 1.00208 0.94683 1.04012 1.21453 0.96608 0.95517 0.92558 1.21323 1.00170 1.01886 1.03007 1.19644 0.90280 0.91668 0.87727 1.83640 1.49294 1.32812 1.47268 1.20844 1.19480 0.91658 1.15668 0.88893 1.25017 1.00293 0.95995 0.96073 1.69675 1.42550 1.15498 1.27295 0.85546 0.79314 0.79880 0.78257 1.19273 1.18743 1.19523 1.22872 0.87818 0.95242 0.98764 0.91421 0.90920 0.89571 0.75625 0.86461 0.88527 0.89408 0.89296 0.82271 0.81389 0.82815 0.86456 0.90413 0.92294 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 8.83 71.98 0.64 -1.46 16 2 C 0.13 2.23 1.28 -9.60 -0.01 2.21 16 3 O -0.56 -8.96 13.11 -148.98 -1.95 -10.91 16 4 C -0.12 -1.84 6.26 31.99 0.20 -1.64 16 5 C 0.09 1.98 5.12 86.85 0.44 2.43 16 6 N -0.62 -19.82 3.33 -815.58 -2.71 -22.53 16 7 C 0.57 25.11 7.39 86.69 0.64 25.75 16 8 O -0.58 -31.92 16.32 12.54 0.20 -31.71 16 9 C -0.22 -9.39 5.53 -19.99 -0.11 -9.50 16 10 C -0.04 -1.18 7.91 22.52 0.18 -1.00 16 11 C -0.18 -4.72 10.03 22.26 0.22 -4.49 16 12 C -0.04 -1.34 10.03 22.30 0.22 -1.12 16 13 C -0.24 -10.55 9.16 22.36 0.20 -10.35 16 14 C 0.16 7.92 6.63 22.91 0.15 8.07 16 15 O -0.23 -13.38 7.26 -3.42 -0.02 -13.40 16 16 C -0.40 -24.75 9.95 67.93 0.68 -24.07 16 17 H 0.09 5.79 5.44 -2.91 -0.02 5.77 16 18 C 0.03 1.62 5.49 84.85 0.47 2.09 16 19 N -0.91 -55.97 13.96 21.62 0.30 -55.67 16 20 Si 0.95 50.69 28.62 68.60 1.96 52.65 16 21 H -0.27 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.26 -12.94 7.11 99.48 0.71 -12.24 16 23 H -0.27 -15.96 7.11 99.48 0.71 -15.25 16 24 C 0.08 2.05 6.23 86.73 0.54 2.59 16 25 H 0.07 0.95 8.06 -2.39 -0.02 0.93 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.39 3.70 9.07 -74.06 -0.67 3.03 16 29 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.10 1.45 8.05 -2.38 -0.02 1.43 16 31 H 0.09 1.86 6.60 -2.39 -0.02 1.84 16 32 H 0.09 1.63 7.23 -2.39 -0.02 1.62 16 33 H 0.16 3.51 5.44 -2.91 -0.02 3.50 16 34 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 36 H 0.12 5.49 5.64 -2.91 -0.02 5.48 16 37 H 0.29 16.18 8.31 -92.71 -0.77 15.41 16 38 H 0.06 1.74 7.76 -2.39 -0.02 1.72 16 39 H 0.06 1.73 8.07 -2.39 -0.02 1.71 16 Total: -1.00 -83.60 323.95 2.66 -80.95 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.42 Total: 11.13 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 4.46 Total: -10.50 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -2.41 Total: -78.20 kcal Atomic # 8 Polarization: -54.25 SS G_CDS: -1.77 Total: -56.02 kcal Atomic # 14 Polarization: 50.69 SS G_CDS: 1.96 Total: 52.65 kcal Total: -83.60 2.66 -80.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177408771.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.382 kcal (2) G-P(sol) polarization free energy of solvation -83.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds