Wall clock time and date at job start Tue Mar 31 2020 06:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 110.64107 * 2 1 4 4 C 1.55156 * 110.71957 * 123.13618 * 2 1 3 5 5 C 1.54915 * 101.58443 * 153.86681 * 4 2 1 6 6 N 1.47422 * 104.82870 * 322.99186 * 5 4 2 7 7 C 1.34776 * 125.64825 * 203.85692 * 6 5 4 8 8 O 1.21594 * 119.99753 * 355.04564 * 7 6 5 9 9 C 1.47536 * 120.00065 * 175.03990 * 7 6 5 10 10 C 1.39668 * 120.19649 * 7.87105 * 9 7 6 11 11 C 1.37829 * 119.91375 * 179.74264 * 10 9 7 12 12 C 1.38566 * 120.32531 * 0.53585 * 11 10 9 13 13 C 1.38018 * 120.40322 * 359.73828 * 12 11 10 14 14 C 1.38832 * 120.07246 * 359.97438 * 13 12 11 15 15 O 1.35527 * 120.16203 * 180.02562 * 14 13 12 16 16 C 1.34815 * 116.99847 * 5.37955 * 15 14 13 17 17 H 1.08005 * 120.00183 * 354.96168 * 16 15 14 18 18 C 1.38700 * 119.99910 * 174.96629 * 16 15 14 19 19 N 1.31516 * 119.99821 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99980 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46564 * 89.99700 * 20 18 16 22 22 H 1.48495 * 109.47018 * 209.99715 * 20 18 16 23 23 H 1.48494 * 109.47176 * 330.00070 * 20 18 16 24 24 C 1.47026 * 108.70473 * 24.12867 * 6 5 4 25 25 H 1.08998 * 109.47291 * 296.85944 * 1 2 3 26 26 H 1.09001 * 109.46532 * 56.86320 * 1 2 3 27 27 H 1.09003 * 109.47001 * 176.85624 * 1 2 3 28 28 H 0.96701 * 113.99944 * 303.13467 * 3 2 1 29 29 H 1.09003 * 111.00192 * 35.79520 * 4 2 1 30 30 H 1.08999 * 111.04232 * 271.95790 * 4 2 1 31 31 H 1.09000 * 110.36824 * 204.15185 * 5 4 2 32 32 H 1.08997 * 110.45853 * 81.87990 * 5 4 2 33 33 H 1.07997 * 120.03864 * 0.02562 * 10 9 7 34 34 H 1.08001 * 119.83277 * 180.29657 * 11 10 9 35 35 H 1.08007 * 119.79951 * 179.76422 * 12 11 10 36 36 H 1.08006 * 119.96774 * 179.97438 * 13 12 11 37 37 H 0.97000 * 119.99923 * 180.02562 * 19 18 16 38 38 H 1.09000 * 109.87981 * 118.35388 * 24 6 5 39 39 H 1.08995 * 109.88207 * 239.51886 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0337 1.3373 0.0000 4 6 2.0789 -0.7933 1.2152 5 6 3.4633 -1.2486 0.6898 6 7 3.2445 -1.5520 -0.7361 7 6 3.9950 -2.3828 -1.4865 8 8 4.9980 -2.8860 -1.0182 9 6 3.5995 -2.6817 -2.8761 10 6 2.5466 -1.9841 -3.4723 11 6 2.1854 -2.2644 -4.7726 12 6 2.8549 -3.2434 -5.4891 13 6 3.8936 -3.9448 -4.9111 14 6 4.2751 -3.6719 -3.6044 15 8 5.2951 -4.3592 -3.0353 16 6 5.9717 -5.2165 -3.8257 17 1 5.6418 -5.3917 -4.8391 18 6 7.0913 -5.8737 -3.3374 19 7 7.4931 -5.6601 -2.1035 20 14 8.0283 -7.0622 -4.4324 21 1 9.0877 -6.3266 -5.1686 22 1 8.6501 -8.1202 -3.5963 23 1 7.0921 -7.6843 -5.4027 24 6 2.0760 -0.7933 -1.2058 25 1 -0.3634 0.4643 0.9168 26 1 -0.3632 0.5618 -0.8606 27 1 -0.3633 -1.0262 -0.0564 28 1 1.7205 1.8756 -0.7398 29 1 1.4451 -1.6510 1.4404 30 1 2.1849 -0.1487 2.0878 31 1 3.7960 -2.1404 1.2208 32 1 4.1946 -0.4478 0.7995 33 1 2.0191 -1.2230 -2.9167 34 1 1.3742 -1.7208 -5.2339 35 1 2.5623 -3.4587 -6.5063 36 1 4.4102 -4.7067 -5.4760 37 1 8.2763 -6.1194 -1.7621 38 1 2.3742 -0.1059 -1.9974 39 1 1.3131 -1.4785 -1.5750 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177408790.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:53 Heat of formation + Delta-G solvation = -51.557169 kcal Electronic energy + Delta-G solvation = -23594.574652 eV Core-core repulsion = 20083.349910 eV Total energy + Delta-G solvation = -3511.224742 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.26142 -38.95136 -37.46631 -36.35563 -35.09133 -32.33806 -31.86459 -30.96266 -29.11576 -28.91618 -26.64925 -25.38322 -23.86563 -21.92572 -21.62633 -20.47076 -19.39067 -18.06896 -17.38828 -16.83838 -16.25851 -15.44582 -15.07359 -14.76617 -14.64904 -14.30744 -14.13679 -13.96195 -13.76861 -13.31733 -12.99735 -12.85196 -12.65836 -12.53965 -12.22773 -11.98215 -11.74575 -11.60460 -11.42399 -11.22846 -11.02180 -10.88233 -10.87641 -10.60503 -10.46643 -9.92425 -9.54560 -8.87396 -8.82082 -8.26222 -8.18828 -7.28684 -6.43050 -4.03179 1.74004 2.33172 3.12343 3.13995 3.18245 3.41664 3.70822 3.92586 3.94809 4.30790 4.50521 4.59024 4.71075 5.07564 5.11920 5.20596 5.25734 5.30744 5.41197 5.47630 5.54068 5.58764 5.67042 5.75483 5.80857 5.86385 5.95968 6.08787 6.15271 6.15859 6.57771 6.60243 6.81212 6.95187 7.08263 7.26576 7.30956 7.45984 7.71666 7.93276 8.07811 8.96220 9.06435 9.68858 10.70895 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.022397 B = 0.004608 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.843999 B = 6075.176514 C = 7123.733865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.110 3.890 3 O -0.550 6.550 4 C -0.119 4.119 5 C 0.113 3.887 6 N -0.626 5.626 7 C 0.570 3.430 8 O -0.498 6.498 9 C -0.223 4.223 10 C -0.076 4.076 11 C -0.233 4.233 12 C -0.051 4.051 13 C -0.239 4.239 14 C 0.189 3.811 15 O -0.126 6.126 16 C -0.404 4.404 17 H 0.094 0.906 18 C 0.044 3.956 19 N -0.833 5.833 20 Si 0.941 3.059 21 H -0.272 1.272 22 H -0.276 1.276 23 H -0.266 1.266 24 C 0.076 3.924 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.377 0.623 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.144 0.856 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.131 0.869 37 H 0.271 0.729 38 H 0.077 0.923 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.178 10.236 1.026 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.069 3.931 3 O -0.356 6.356 4 C -0.157 4.157 5 C -0.010 4.010 6 N -0.364 5.364 7 C 0.363 3.637 8 O -0.371 6.371 9 C -0.227 4.227 10 C -0.094 4.094 11 C -0.252 4.252 12 C -0.070 4.070 13 C -0.258 4.258 14 C 0.130 3.870 15 O -0.024 6.024 16 C -0.480 4.480 17 H 0.111 0.889 18 C -0.163 4.163 19 N -0.464 5.464 20 Si 0.765 3.235 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.191 1.191 24 C -0.048 4.048 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.225 0.775 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.160 0.840 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.149 0.851 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.906 9.541 2.199 16.200 hybrid contribution 0.070 -0.380 -1.322 1.377 sum -12.836 9.161 0.877 15.794 Atomic orbital electron populations 1.22356 0.94243 1.03327 1.02873 1.22290 0.92606 0.82784 0.95401 1.86569 1.74065 1.22536 1.52433 1.22842 0.96764 0.99201 0.96899 1.22070 0.96257 1.00821 0.81838 1.48271 1.30703 1.46580 1.10830 1.18015 0.82565 0.77814 0.85354 1.90954 1.23752 1.49920 1.72509 1.18764 1.04412 1.04710 0.94849 1.22090 0.94352 0.97640 0.95290 1.20495 1.04867 1.04100 0.95716 1.20916 0.93816 0.94021 0.98248 1.21136 1.02522 1.05910 0.96257 1.19273 0.88299 0.89018 0.90444 1.84166 1.35978 1.45899 1.36353 1.21496 1.09231 1.20661 0.96584 0.88874 1.25391 0.96197 0.98086 0.96655 1.70130 1.23215 1.38914 1.14167 0.85721 0.79536 0.79163 0.79041 1.19731 1.20128 1.19073 1.23146 0.89642 0.95407 0.96584 0.91345 0.91857 0.90961 0.77516 0.89319 0.89214 0.90412 0.91604 0.83957 0.87392 0.87282 0.85095 0.91852 0.90505 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 8.83 37.16 0.33 -0.90 16 2 C 0.11 1.12 1.28 -88.79 -0.11 1.00 16 3 O -0.55 -5.64 13.11 -35.23 -0.46 -6.10 16 4 C -0.12 -1.32 6.26 -24.58 -0.15 -1.48 16 5 C 0.11 1.75 6.88 -2.53 -0.02 1.73 16 6 N -0.63 -11.10 3.33 -175.40 -0.58 -11.69 16 7 C 0.57 13.34 7.79 -12.47 -0.10 13.24 16 8 O -0.50 -14.30 15.51 -16.41 -0.25 -14.56 16 9 C -0.22 -5.04 5.89 -104.81 -0.62 -5.66 16 10 C -0.08 -1.34 8.59 -39.20 -0.34 -1.68 16 11 C -0.23 -3.87 10.02 -39.61 -0.40 -4.27 16 12 C -0.05 -0.93 10.03 -39.54 -0.40 -1.32 16 13 C -0.24 -5.25 9.16 -39.44 -0.36 -5.61 16 14 C 0.19 4.84 6.65 -38.60 -0.26 4.58 16 15 O -0.13 -3.80 7.87 -20.92 -0.16 -3.96 16 16 C -0.40 -11.63 9.49 30.90 0.29 -11.34 16 17 H 0.09 2.43 5.21 -52.48 -0.27 2.16 16 18 C 0.04 1.26 5.49 -17.52 -0.10 1.16 16 19 N -0.83 -25.51 13.67 55.48 0.76 -24.75 16 20 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 C 0.08 0.96 4.23 -3.06 -0.01 0.95 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 28 H 0.38 2.32 9.07 45.56 0.41 2.74 16 29 H 0.09 0.88 8.05 -51.93 -0.42 0.47 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.14 1.98 2.77 -57.22 -0.16 1.83 16 34 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.13 2.83 5.64 -52.48 -0.30 2.54 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.08 0.92 6.72 -51.93 -0.35 0.57 16 39 H 0.08 0.98 6.30 -51.93 -0.33 0.65 16 LS Contribution 321.86 15.07 4.85 4.85 Total: -1.00 -36.81 321.86 -7.03 -43.85 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -3.92 Total: 6.20 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -2.24 Total: -9.60 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.18 Total: -36.44 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.88 Total: -24.62 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.81 -7.03 -43.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177408790.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.709 kcal (2) G-P(sol) polarization free energy of solvation -36.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds