Wall clock time and date at job start Tue Mar 31 2020 06:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 110.64107 * 2 1 4 4 C 1.55156 * 110.71957 * 123.13618 * 2 1 3 5 5 C 1.54915 * 101.58443 * 153.86681 * 4 2 1 6 6 N 1.47422 * 104.82870 * 322.99186 * 5 4 2 7 7 C 1.34776 * 125.64825 * 203.85692 * 6 5 4 8 8 O 1.21594 * 119.99753 * 355.04564 * 7 6 5 9 9 C 1.47536 * 120.00065 * 175.03990 * 7 6 5 10 10 C 1.39668 * 120.19649 * 7.87105 * 9 7 6 11 11 C 1.37829 * 119.91375 * 179.74264 * 10 9 7 12 12 C 1.38566 * 120.32531 * 0.53585 * 11 10 9 13 13 C 1.38018 * 120.40322 * 359.73828 * 12 11 10 14 14 C 1.38832 * 120.07246 * 359.97438 * 13 12 11 15 15 O 1.35527 * 120.16203 * 180.02562 * 14 13 12 16 16 C 1.34815 * 116.99847 * 5.37955 * 15 14 13 17 17 H 1.08005 * 120.00183 * 354.96168 * 16 15 14 18 18 C 1.38700 * 119.99910 * 174.96629 * 16 15 14 19 19 N 1.31516 * 119.99821 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99980 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46564 * 89.99700 * 20 18 16 22 22 H 1.48495 * 109.47018 * 209.99715 * 20 18 16 23 23 H 1.48494 * 109.47176 * 330.00070 * 20 18 16 24 24 C 1.47026 * 108.70473 * 24.12867 * 6 5 4 25 25 H 1.08998 * 109.47291 * 296.85944 * 1 2 3 26 26 H 1.09001 * 109.46532 * 56.86320 * 1 2 3 27 27 H 1.09003 * 109.47001 * 176.85624 * 1 2 3 28 28 H 0.96701 * 113.99944 * 303.13467 * 3 2 1 29 29 H 1.09003 * 111.00192 * 35.79520 * 4 2 1 30 30 H 1.08999 * 111.04232 * 271.95790 * 4 2 1 31 31 H 1.09000 * 110.36824 * 204.15185 * 5 4 2 32 32 H 1.08997 * 110.45853 * 81.87990 * 5 4 2 33 33 H 1.07997 * 120.03864 * 0.02562 * 10 9 7 34 34 H 1.08001 * 119.83277 * 180.29657 * 11 10 9 35 35 H 1.08007 * 119.79951 * 179.76422 * 12 11 10 36 36 H 1.08006 * 119.96774 * 179.97438 * 13 12 11 37 37 H 0.97000 * 119.99923 * 180.02562 * 19 18 16 38 38 H 1.09000 * 109.87981 * 118.35388 * 24 6 5 39 39 H 1.08995 * 109.88207 * 239.51886 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0337 1.3373 0.0000 4 6 2.0789 -0.7933 1.2152 5 6 3.4633 -1.2486 0.6898 6 7 3.2445 -1.5520 -0.7361 7 6 3.9950 -2.3828 -1.4865 8 8 4.9980 -2.8860 -1.0182 9 6 3.5995 -2.6817 -2.8761 10 6 2.5466 -1.9841 -3.4723 11 6 2.1854 -2.2644 -4.7726 12 6 2.8549 -3.2434 -5.4891 13 6 3.8936 -3.9448 -4.9111 14 6 4.2751 -3.6719 -3.6044 15 8 5.2951 -4.3592 -3.0353 16 6 5.9717 -5.2165 -3.8257 17 1 5.6418 -5.3917 -4.8391 18 6 7.0913 -5.8737 -3.3374 19 7 7.4931 -5.6601 -2.1035 20 14 8.0283 -7.0622 -4.4324 21 1 9.0877 -6.3266 -5.1686 22 1 8.6501 -8.1202 -3.5963 23 1 7.0921 -7.6843 -5.4027 24 6 2.0760 -0.7933 -1.2058 25 1 -0.3634 0.4643 0.9168 26 1 -0.3632 0.5618 -0.8606 27 1 -0.3633 -1.0262 -0.0564 28 1 1.7205 1.8756 -0.7398 29 1 1.4451 -1.6510 1.4404 30 1 2.1849 -0.1487 2.0878 31 1 3.7960 -2.1404 1.2208 32 1 4.1946 -0.4478 0.7995 33 1 2.0191 -1.2230 -2.9167 34 1 1.3742 -1.7208 -5.2339 35 1 2.5623 -3.4587 -6.5063 36 1 4.4102 -4.7067 -5.4760 37 1 8.2763 -6.1194 -1.7621 38 1 2.3742 -0.1059 -1.9974 39 1 1.3131 -1.4785 -1.5750 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177408790.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:53 Heat of formation + Delta-G solvation = -80.546466 kcal Electronic energy + Delta-G solvation = -23595.831722 eV Core-core repulsion = 20083.349910 eV Total energy + Delta-G solvation = -3512.481812 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.69405 -40.45999 -39.01408 -38.08284 -36.29953 -34.35537 -33.17897 -32.06816 -30.68354 -30.28830 -27.69592 -27.39586 -25.21801 -23.48177 -23.03518 -21.50208 -20.93892 -19.87872 -18.83087 -18.15517 -17.89690 -16.74712 -16.62168 -16.38017 -16.04548 -15.66737 -15.54368 -15.41467 -15.24345 -14.70782 -14.40051 -14.31371 -14.08559 -13.80462 -13.56894 -13.25760 -13.02956 -12.87884 -12.64464 -12.56759 -12.51415 -12.35663 -12.23331 -12.12183 -11.53067 -11.34067 -11.05357 -10.85434 -10.51022 -9.88562 -9.67856 -9.03556 -8.46626 -6.18279 0.10286 0.70512 1.30452 1.42762 1.50237 1.98578 2.02454 2.14479 2.84367 3.14364 3.20230 3.38811 3.43422 3.51657 3.83836 3.94907 4.10937 4.18896 4.26347 4.33720 4.42284 4.53468 4.57324 4.67109 4.71445 4.81216 4.94473 4.96506 5.02046 5.05537 5.10848 5.15430 5.35365 5.38060 5.49725 5.60385 5.67970 5.94058 6.16904 6.51641 6.91872 6.92196 7.34147 7.78287 8.74302 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.022397 B = 0.004608 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.843999 B = 6075.176514 C = 7123.733865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.124 3.876 3 O -0.566 6.566 4 C -0.110 4.110 5 C 0.102 3.898 6 N -0.620 5.620 7 C 0.557 3.443 8 O -0.574 6.574 9 C -0.243 4.243 10 C -0.068 4.068 11 C -0.200 4.200 12 C -0.040 4.040 13 C -0.258 4.258 14 C 0.147 3.853 15 O -0.192 6.192 16 C -0.429 4.429 17 H 0.108 0.892 18 C -0.024 4.024 19 N -0.908 5.908 20 Si 1.025 2.975 21 H -0.262 1.262 22 H -0.272 1.272 23 H -0.246 1.246 24 C 0.060 3.940 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.397 0.603 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.187 0.813 34 H 0.168 0.832 35 H 0.155 0.845 36 H 0.124 0.876 37 H 0.271 0.729 38 H 0.093 0.907 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.774 12.632 -1.552 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.083 3.917 3 O -0.375 6.375 4 C -0.148 4.148 5 C -0.021 4.021 6 N -0.355 5.355 7 C 0.350 3.650 8 O -0.454 6.454 9 C -0.247 4.247 10 C -0.085 4.085 11 C -0.218 4.218 12 C -0.058 4.058 13 C -0.277 4.277 14 C 0.092 3.908 15 O -0.095 6.095 16 C -0.505 4.505 17 H 0.125 0.875 18 C -0.223 4.223 19 N -0.543 5.543 20 Si 0.843 3.157 21 H -0.187 1.187 22 H -0.196 1.196 23 H -0.169 1.169 24 C -0.061 4.061 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.247 0.753 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.204 0.796 34 H 0.186 0.814 35 H 0.173 0.827 36 H 0.141 0.859 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.631 12.028 -0.416 21.347 hybrid contribution 1.106 -0.757 -0.586 1.462 sum -16.525 11.271 -1.002 20.028 Atomic orbital electron populations 1.22315 0.90999 1.04212 1.04520 1.22185 0.94529 0.82257 0.92774 1.86549 1.74704 1.22535 1.53680 1.22863 0.93637 1.00256 0.98039 1.22252 0.99401 0.99476 0.80960 1.48267 1.30933 1.44962 1.11350 1.18403 0.82255 0.78079 0.86243 1.90916 1.27247 1.53167 1.74050 1.19220 1.05788 1.04959 0.94746 1.22685 0.92387 0.97236 0.96233 1.21262 1.04189 1.01850 0.94484 1.21484 0.91500 0.92643 1.00208 1.21293 1.04360 1.07011 0.95080 1.20106 0.88108 0.90040 0.92571 1.84175 1.38773 1.48536 1.38025 1.22066 1.09957 1.21100 0.97339 0.87495 1.26821 0.97041 1.00145 0.98260 1.70335 1.24756 1.42085 1.17156 0.84530 0.77982 0.76274 0.76941 1.18712 1.19627 1.16899 1.23592 0.88000 0.95834 0.98687 0.90481 0.89468 0.90533 0.75251 0.87904 0.87644 0.93021 0.92574 0.79630 0.81409 0.82690 0.85877 0.92013 0.88916 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 8.83 71.98 0.64 -0.82 16 2 C 0.12 2.02 1.28 -9.61 -0.01 2.01 16 3 O -0.57 -9.43 13.11 -148.98 -1.95 -11.38 16 4 C -0.11 -2.23 6.26 31.99 0.20 -2.03 16 5 C 0.10 3.27 6.88 86.86 0.60 3.87 16 6 N -0.62 -22.21 3.33 -827.09 -2.75 -24.96 16 7 C 0.56 27.61 7.79 86.70 0.68 28.28 16 8 O -0.57 -36.46 15.51 16.73 0.26 -36.20 16 9 C -0.24 -11.16 5.89 -19.99 -0.12 -11.27 16 10 C -0.07 -2.14 8.59 22.52 0.19 -1.95 16 11 C -0.20 -5.35 10.02 22.25 0.22 -5.13 16 12 C -0.04 -1.27 10.03 22.30 0.22 -1.05 16 13 C -0.26 -11.33 9.16 22.36 0.20 -11.13 16 14 C 0.15 7.88 6.65 22.91 0.15 8.03 16 15 O -0.19 -12.70 7.87 0.60 0.00 -12.70 16 16 C -0.43 -26.66 9.49 67.93 0.64 -26.02 16 17 H 0.11 5.94 5.21 -2.91 -0.02 5.92 16 18 C -0.02 -1.44 5.49 84.85 0.47 -0.98 16 19 N -0.91 -60.95 13.67 21.62 0.30 -60.65 16 20 Si 1.02 45.15 29.55 68.60 2.03 47.17 16 21 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 23 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 24 C 0.06 1.32 4.23 86.73 0.37 1.69 16 25 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.08 0.67 8.06 -2.39 -0.02 0.65 16 28 H 0.40 3.01 9.07 -74.06 -0.67 2.34 16 29 H 0.10 1.81 8.05 -2.39 -0.02 1.79 16 30 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.90 8.09 -2.39 -0.02 1.88 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.19 4.12 2.77 -7.36 -0.02 4.10 16 34 H 0.17 2.75 8.06 -2.91 -0.02 2.72 16 35 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 36 H 0.12 5.46 5.64 -2.91 -0.02 5.45 16 37 H 0.27 16.62 8.31 -92.71 -0.77 15.85 16 38 H 0.09 1.78 6.72 -2.39 -0.02 1.76 16 39 H 0.10 1.89 6.30 -2.39 -0.02 1.88 16 Total: -1.00 -95.58 321.86 2.75 -92.83 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.41 Total: 22.40 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 4.45 Total: -16.50 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -2.46 Total: -85.62 kcal Atomic # 8 Polarization: -58.60 SS G_CDS: -1.69 Total: -60.28 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -95.58 2.75 -92.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177408790.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.284 kcal (2) G-P(sol) polarization free energy of solvation -95.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds