Wall clock time and date at job start Tue Mar 31 2020 06:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.62459 * 2 1 4 4 N 1.46500 * 109.47225 * 180.30756 * 3 2 1 5 5 C 1.34777 * 120.00326 * 179.97438 * 4 3 2 6 6 O 1.21549 * 119.99648 * 359.97438 * 5 4 3 7 7 C 1.47880 * 120.00296 * 179.97438 * 5 4 3 8 8 C 1.39929 * 120.02417 * 359.97438 * 7 5 4 9 9 C 1.38330 * 120.35752 * 180.02562 * 8 7 5 10 10 C 1.37752 * 120.41366 * 359.97438 * 9 8 7 11 11 C 1.40755 * 120.03886 * 0.02562 * 10 9 8 12 12 C 1.41435 * 120.17700 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00074 * 335.20949 * 12 11 10 14 14 C 1.39934 * 120.00191 * 155.21234 * 12 11 10 15 15 N 1.30832 * 119.99780 * 342.28913 * 14 12 11 16 16 Si 1.86793 * 120.00293 * 162.28750 * 14 12 11 17 17 H 1.48506 * 109.47124 * 59.99913 * 16 14 12 18 18 H 1.48500 * 109.47358 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47416 * 300.00115 * 16 14 12 20 20 C 1.38998 * 120.02842 * 180.02562 * 7 5 4 21 21 O 1.43754 * 109.51115 * 120.31455 * 2 1 3 22 22 C 1.44781 * 104.81349 * 95.49592 * 21 2 1 23 23 C 1.54912 * 101.72276 * 36.10477 * 22 21 2 24 24 O 1.43369 * 109.63197 * 239.60702 * 2 1 3 25 25 H 1.08996 * 109.47561 * 60.00203 * 1 2 3 26 26 H 1.09005 * 109.46884 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47590 * 299.99927 * 1 2 3 28 28 H 1.09001 * 109.47010 * 60.30793 * 3 2 1 29 29 H 1.09001 * 109.46880 * 300.30634 * 3 2 1 30 30 H 0.97008 * 119.99911 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.81711 * 0.04656 * 8 7 5 32 32 H 1.07995 * 119.79038 * 179.97438 * 9 8 7 33 33 H 1.07999 * 119.98175 * 180.02562 * 10 9 8 34 34 H 0.96997 * 120.00049 * 180.02562 * 15 14 12 35 35 H 1.07993 * 120.19752 * 0.25315 * 20 7 5 36 36 H 1.09004 * 110.97625 * 277.99459 * 22 21 2 37 37 H 1.08997 * 110.97671 * 154.21269 * 22 21 2 38 38 H 1.08999 * 110.69727 * 206.04431 * 23 22 21 39 39 H 1.08999 * 110.69589 * 82.83616 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0438 1.4411 0.0000 4 7 3.5088 1.4373 -0.0074 5 6 4.1859 2.6026 -0.0093 6 8 3.5809 3.6569 -0.0052 7 6 5.6646 2.5987 -0.0162 8 6 6.3616 1.3853 -0.0203 9 6 7.7448 1.3736 -0.0262 10 6 8.4522 2.5556 -0.0287 11 6 7.7685 3.7859 -0.0246 12 6 8.4919 5.0013 -0.0277 13 1 9.4997 5.0308 0.3594 14 6 7.9018 6.1655 -0.5323 15 7 6.8483 6.0834 -1.3037 16 14 8.6181 7.8367 -0.1044 17 1 10.0224 7.9103 -0.5819 18 1 7.8166 8.9013 -0.7596 19 1 8.5854 8.0271 1.3680 20 6 6.3634 3.8002 -0.0175 21 8 2.0101 -0.6839 1.1697 22 6 2.2601 -2.0402 0.7290 23 6 2.7856 -1.8117 -0.7102 24 8 2.0117 -0.6832 -1.1648 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6864 1.9543 0.8927 29 1 1.6774 1.9575 -0.8872 30 1 3.9916 0.5959 -0.0117 31 1 5.8165 0.4529 -0.0191 32 1 8.2734 0.4318 -0.0289 33 1 9.5320 2.5383 -0.0337 34 1 6.4394 6.8904 -1.6538 35 1 5.8297 4.7390 -0.0094 36 1 1.3394 -2.6236 0.7203 37 1 3.0176 -2.5188 1.3497 38 1 2.5949 -2.6855 -1.3332 39 1 3.8485 -1.5702 -0.6984 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179026852.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:17 Heat of formation + Delta-G solvation = -109.016480 kcal Electronic energy + Delta-G solvation = -23151.473470 eV Core-core repulsion = 19637.757105 eV Total energy + Delta-G solvation = -3513.716364 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.90008 -38.96389 -36.97185 -35.21711 -34.43023 -33.70452 -32.11123 -30.10258 -29.41573 -28.74567 -26.44103 -25.18009 -23.49516 -22.30953 -21.35527 -20.86370 -19.48599 -17.96154 -17.40641 -16.92581 -16.13984 -15.78739 -15.41212 -15.07502 -14.68850 -14.48066 -14.32554 -13.87092 -13.47405 -13.26258 -13.15014 -13.05487 -12.58451 -12.46327 -12.44703 -12.35263 -12.29998 -11.62485 -11.56571 -11.13519 -11.05884 -10.72913 -10.48896 -10.41903 -10.01281 -9.92611 -9.67334 -9.18934 -8.98680 -8.62063 -7.60482 -7.50088 -6.77815 -4.39476 2.24218 2.84231 3.09146 3.10901 3.14085 3.18545 3.65145 3.66440 3.90383 3.94484 4.29866 4.50449 4.65171 4.66956 4.85891 4.90942 5.10928 5.33689 5.37971 5.47556 5.59139 5.61722 5.65946 5.69017 5.80997 5.96501 6.10377 6.28699 6.73496 6.86441 6.86675 7.00715 7.03921 7.23176 7.40113 7.71941 7.77984 7.94537 8.12070 8.21377 8.52437 8.82131 8.85555 8.98570 10.17055 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.027204 B = 0.003804 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.031202 B = 7358.123591 C = 8094.840596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.244 3.756 3 C 0.122 3.878 4 N -0.727 5.727 5 C 0.564 3.436 6 O -0.548 6.548 7 C -0.126 4.126 8 C -0.217 4.217 9 C -0.097 4.097 10 C -0.212 4.212 11 C 0.100 3.900 12 C -0.461 4.461 13 H 0.081 0.919 14 C 0.074 3.926 15 N -0.783 5.783 16 Si 0.911 3.089 17 H -0.265 1.265 18 H -0.277 1.277 19 H -0.263 1.263 20 C -0.091 4.091 21 O -0.365 6.365 22 C 0.014 3.986 23 C 0.016 3.984 24 O -0.372 6.372 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.398 0.602 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.285 0.715 35 H 0.134 0.866 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.409 -13.796 1.812 16.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.167 3.833 3 C -0.003 4.003 4 N -0.381 5.381 5 C 0.355 3.645 6 O -0.426 6.426 7 C -0.129 4.129 8 C -0.237 4.237 9 C -0.116 4.116 10 C -0.232 4.232 11 C 0.097 3.903 12 C -0.490 4.490 13 H 0.099 0.901 14 C -0.146 4.146 15 N -0.407 5.407 16 Si 0.735 3.265 17 H -0.190 1.190 18 H -0.202 1.202 19 H -0.187 1.187 20 C -0.112 4.112 21 O -0.285 6.285 22 C -0.063 4.063 23 C -0.060 4.060 24 O -0.293 6.293 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.234 0.766 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.151 0.849 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.119 0.881 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.050 -12.714 1.661 16.292 hybrid contribution 0.476 0.028 0.046 0.479 sum -9.574 -12.686 1.708 15.985 Atomic orbital electron populations 1.22297 0.92809 1.03472 1.03956 1.23711 0.93490 0.90941 0.75195 1.21579 0.82248 0.93078 1.03380 1.45697 1.05531 1.09410 1.77454 1.18841 0.88476 0.82595 0.74597 1.90690 1.70576 1.31156 1.50167 1.19457 0.89965 0.95326 1.08195 1.20307 0.94067 0.94553 1.14799 1.20417 0.93546 0.96637 1.00971 1.21091 0.97922 0.92414 1.11795 1.17590 0.91512 0.92492 0.88703 1.19558 1.01121 0.92325 1.36005 0.90102 1.25963 0.94321 1.01630 0.92658 1.69787 1.17723 1.31817 1.21395 0.86321 0.79715 0.80409 0.80042 1.18986 1.20222 1.18717 1.21623 0.94097 0.96210 0.99220 1.89344 1.86085 1.21572 1.31512 1.24411 1.01509 0.85211 0.95134 1.24270 0.96997 0.89819 0.94928 1.88963 1.69542 1.41757 1.29017 0.90251 0.91478 0.90172 0.90087 0.89826 0.76618 0.89552 0.88939 0.88611 0.90370 0.84876 0.90651 0.87119 0.88063 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 9.19 37.16 0.34 -1.26 16 2 C 0.24 3.02 1.02 -26.73 -0.03 2.99 16 3 C 0.12 1.89 5.09 -4.04 -0.02 1.87 16 4 N -0.73 -13.25 5.29 -61.24 -0.32 -13.57 16 5 C 0.56 13.01 7.77 -12.31 -0.10 12.91 16 6 O -0.55 -14.23 16.33 5.32 0.09 -14.14 16 7 C -0.13 -3.09 5.87 -105.04 -0.62 -3.70 16 8 C -0.22 -4.70 9.55 -38.91 -0.37 -5.08 16 9 C -0.10 -2.11 10.01 -39.73 -0.40 -2.51 16 10 C -0.21 -5.11 9.78 -38.81 -0.38 -5.48 16 11 C 0.10 2.67 5.57 -106.87 -0.60 2.08 16 12 C -0.46 -12.26 9.05 -37.73 -0.34 -12.60 16 13 H 0.08 2.03 7.91 -52.48 -0.41 1.61 16 14 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 15 N -0.78 -21.03 10.97 55.55 0.61 -20.42 16 16 Si 0.91 18.98 29.59 -169.99 -5.03 13.95 16 17 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 18 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 20 C -0.09 -2.49 8.23 -38.44 -0.32 -2.81 16 21 O -0.36 -4.48 10.76 -59.04 -0.64 -5.12 16 22 C 0.01 0.12 7.91 38.17 0.30 0.42 16 23 C 0.02 0.15 7.67 38.17 0.29 0.44 16 24 O -0.37 -4.68 10.61 -59.04 -0.63 -5.30 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.40 6.59 5.45 -40.82 -0.22 6.37 16 31 H 0.09 1.57 6.38 -52.48 -0.33 1.24 16 32 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 34 H 0.29 7.06 8.30 -40.82 -0.34 6.72 16 35 H 0.13 3.92 5.77 -52.49 -0.30 3.61 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.74 7.76 -51.93 -0.40 0.34 16 LS Contribution 329.53 15.07 4.97 4.97 Total: -1.00 -31.61 329.53 -8.31 -39.92 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.04 Total: 10.68 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -2.31 Total: -10.94 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.29 Total: -34.00 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -1.17 Total: -24.57 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.61 -8.31 -39.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179026852.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.099 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds