Wall clock time and date at job start Tue Mar 31 2020 06:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.62459 * 2 1 4 4 N 1.46500 * 109.47225 * 180.30756 * 3 2 1 5 5 C 1.34777 * 120.00326 * 179.97438 * 4 3 2 6 6 O 1.21549 * 119.99648 * 359.97438 * 5 4 3 7 7 C 1.47880 * 120.00296 * 179.97438 * 5 4 3 8 8 C 1.39929 * 120.02417 * 359.97438 * 7 5 4 9 9 C 1.38330 * 120.35752 * 180.02562 * 8 7 5 10 10 C 1.37752 * 120.41366 * 359.97438 * 9 8 7 11 11 C 1.40755 * 120.03886 * 0.02562 * 10 9 8 12 12 C 1.41435 * 120.17700 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00074 * 335.20949 * 12 11 10 14 14 C 1.39934 * 120.00191 * 155.21234 * 12 11 10 15 15 N 1.30832 * 119.99780 * 342.28913 * 14 12 11 16 16 Si 1.86793 * 120.00293 * 162.28750 * 14 12 11 17 17 H 1.48506 * 109.47124 * 59.99913 * 16 14 12 18 18 H 1.48500 * 109.47358 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47416 * 300.00115 * 16 14 12 20 20 C 1.38998 * 120.02842 * 180.02562 * 7 5 4 21 21 O 1.43754 * 109.51115 * 120.31455 * 2 1 3 22 22 C 1.44781 * 104.81349 * 95.49592 * 21 2 1 23 23 C 1.54912 * 101.72276 * 36.10477 * 22 21 2 24 24 O 1.43369 * 109.63197 * 239.60702 * 2 1 3 25 25 H 1.08996 * 109.47561 * 60.00203 * 1 2 3 26 26 H 1.09005 * 109.46884 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47590 * 299.99927 * 1 2 3 28 28 H 1.09001 * 109.47010 * 60.30793 * 3 2 1 29 29 H 1.09001 * 109.46880 * 300.30634 * 3 2 1 30 30 H 0.97008 * 119.99911 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.81711 * 0.04656 * 8 7 5 32 32 H 1.07995 * 119.79038 * 179.97438 * 9 8 7 33 33 H 1.07999 * 119.98175 * 180.02562 * 10 9 8 34 34 H 0.96997 * 120.00049 * 180.02562 * 15 14 12 35 35 H 1.07993 * 120.19752 * 0.25315 * 20 7 5 36 36 H 1.09004 * 110.97625 * 277.99459 * 22 21 2 37 37 H 1.08997 * 110.97671 * 154.21269 * 22 21 2 38 38 H 1.08999 * 110.69727 * 206.04431 * 23 22 21 39 39 H 1.08999 * 110.69589 * 82.83616 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0438 1.4411 0.0000 4 7 3.5088 1.4373 -0.0074 5 6 4.1859 2.6026 -0.0093 6 8 3.5809 3.6569 -0.0052 7 6 5.6646 2.5987 -0.0162 8 6 6.3616 1.3853 -0.0203 9 6 7.7448 1.3736 -0.0262 10 6 8.4522 2.5556 -0.0287 11 6 7.7685 3.7859 -0.0246 12 6 8.4919 5.0013 -0.0277 13 1 9.4997 5.0308 0.3594 14 6 7.9018 6.1655 -0.5323 15 7 6.8483 6.0834 -1.3037 16 14 8.6181 7.8367 -0.1044 17 1 10.0224 7.9103 -0.5819 18 1 7.8166 8.9013 -0.7596 19 1 8.5854 8.0271 1.3680 20 6 6.3634 3.8002 -0.0175 21 8 2.0101 -0.6839 1.1697 22 6 2.2601 -2.0402 0.7290 23 6 2.7856 -1.8117 -0.7102 24 8 2.0117 -0.6832 -1.1648 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6864 1.9543 0.8927 29 1 1.6774 1.9575 -0.8872 30 1 3.9916 0.5959 -0.0117 31 1 5.8165 0.4529 -0.0191 32 1 8.2734 0.4318 -0.0289 33 1 9.5320 2.5383 -0.0337 34 1 6.4394 6.8904 -1.6538 35 1 5.8297 4.7390 -0.0094 36 1 1.3394 -2.6236 0.7203 37 1 3.0176 -2.5188 1.3497 38 1 2.5949 -2.6855 -1.3332 39 1 3.8485 -1.5702 -0.6984 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179026852.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:15 Heat of formation + Delta-G solvation = -130.473248 kcal Electronic energy + Delta-G solvation = -23152.403905 eV Core-core repulsion = 19637.757105 eV Total energy + Delta-G solvation = -3514.646800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.84228 -40.68626 -38.82216 -36.09041 -35.94794 -35.54548 -33.26227 -31.85994 -31.29218 -29.47677 -27.83893 -27.00393 -24.19065 -24.00399 -22.84927 -22.32663 -21.20627 -19.61742 -18.52111 -18.10444 -17.49793 -17.16496 -16.70619 -16.62937 -16.38907 -16.00960 -15.62137 -15.07803 -15.01644 -14.58785 -14.40891 -14.29143 -14.13319 -13.86038 -13.69354 -13.43776 -13.21661 -13.07641 -12.95126 -12.80727 -12.53868 -12.28268 -12.20709 -11.92867 -11.53196 -11.14870 -11.07206 -11.00800 -10.66347 -10.23688 -9.49342 -9.40505 -8.67056 -6.39200 0.35063 1.00012 1.36380 1.48013 1.50969 2.06217 2.14199 2.19399 2.37479 2.75832 2.77674 3.52612 3.68352 3.70167 3.91767 4.00717 4.09160 4.20803 4.33054 4.39179 4.53619 4.55051 4.56933 4.70639 4.73306 4.80923 4.89645 4.95803 5.07314 5.11705 5.17052 5.28936 5.36342 5.50069 5.83915 5.90198 6.03672 6.03986 6.26526 6.45488 6.63155 6.86664 6.93371 7.23033 8.29864 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.027204 B = 0.003804 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.031202 B = 7358.123591 C = 8094.840596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.250 3.750 3 C 0.113 3.887 4 N -0.705 5.705 5 C 0.559 3.441 6 O -0.588 6.588 7 C -0.139 4.139 8 C -0.199 4.199 9 C -0.093 4.093 10 C -0.216 4.216 11 C 0.069 3.931 12 C -0.498 4.498 13 H 0.086 0.914 14 C 0.029 3.971 15 N -0.826 5.826 16 Si 0.984 3.016 17 H -0.251 1.251 18 H -0.272 1.272 19 H -0.260 1.260 20 C -0.130 4.130 21 O -0.386 6.386 22 C 0.012 3.988 23 C 0.007 3.993 24 O -0.391 6.391 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.408 0.592 31 H 0.129 0.871 32 H 0.141 0.859 33 H 0.111 0.889 34 H 0.287 0.713 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.279 -16.692 2.182 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.173 3.827 3 C -0.011 4.011 4 N -0.358 5.358 5 C 0.349 3.651 6 O -0.470 6.470 7 C -0.143 4.143 8 C -0.219 4.219 9 C -0.111 4.111 10 C -0.236 4.236 11 C 0.067 3.933 12 C -0.527 4.527 13 H 0.104 0.896 14 C -0.186 4.186 15 N -0.451 5.451 16 Si 0.804 3.196 17 H -0.175 1.175 18 H -0.197 1.197 19 H -0.185 1.185 20 C -0.151 4.151 21 O -0.307 6.307 22 C -0.064 4.064 23 C -0.069 4.069 24 O -0.313 6.313 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.246 0.754 31 H 0.147 0.853 32 H 0.159 0.841 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.919 -15.686 2.032 18.670 hybrid contribution 0.407 0.663 -0.063 0.780 sum -9.513 -15.023 1.970 17.890 Atomic orbital electron populations 1.22277 0.90597 1.04825 1.04366 1.23595 0.94762 0.88809 0.75551 1.21836 0.80211 0.96192 1.02866 1.45509 1.06867 1.08195 1.75192 1.18803 0.88279 0.83338 0.74700 1.90661 1.71140 1.32905 1.52315 1.19758 0.91046 0.95679 1.07778 1.20777 0.94586 0.94924 1.11613 1.20913 0.93613 0.97717 0.98821 1.21423 0.98968 0.92402 1.10796 1.17942 0.91662 0.94054 0.89691 1.19868 1.01773 0.93468 1.37638 0.89571 1.26880 0.94426 1.05410 0.91839 1.69893 1.19491 1.32781 1.22940 0.85222 0.79407 0.75303 0.79638 1.17492 1.19694 1.18478 1.21428 0.94676 0.96097 1.02879 1.89320 1.86299 1.23592 1.31509 1.24697 1.03215 0.83696 0.94744 1.24551 0.96527 0.89742 0.96054 1.88956 1.70099 1.42893 1.29347 0.90020 0.89593 0.89683 0.90521 0.90574 0.75427 0.85347 0.84113 0.87060 0.90271 0.88378 0.88503 0.85167 0.85313 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.19 71.98 0.66 -2.12 16 2 C 0.25 5.73 1.02 30.59 0.03 5.76 16 3 C 0.11 3.47 5.09 86.38 0.44 3.91 16 4 N -0.71 -25.24 5.29 -465.93 -2.47 -27.71 16 5 C 0.56 26.31 7.77 86.80 0.67 26.99 16 6 O -0.59 -32.15 16.33 -3.87 -0.06 -32.21 16 7 C -0.14 -6.91 5.87 -20.13 -0.12 -7.03 16 8 C -0.20 -8.15 9.55 22.70 0.22 -7.94 16 9 C -0.09 -3.73 10.01 22.18 0.22 -3.50 16 10 C -0.22 -10.20 9.78 22.77 0.22 -9.98 16 11 C 0.07 3.80 5.57 -21.32 -0.12 3.69 16 12 C -0.50 -27.48 9.05 23.47 0.21 -27.26 16 13 H 0.09 4.44 7.91 -2.91 -0.02 4.42 16 14 C 0.03 1.56 5.14 85.25 0.44 2.00 16 15 N -0.83 -46.94 10.97 21.82 0.24 -46.70 16 16 Si 0.98 40.10 29.59 68.60 2.03 42.13 16 17 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 18 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 19 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 20 C -0.13 -7.45 8.23 23.01 0.19 -7.26 16 21 O -0.39 -8.51 10.76 -126.22 -1.36 -9.87 16 22 C 0.01 0.16 7.91 72.64 0.57 0.73 16 23 C 0.01 0.10 7.67 72.64 0.56 0.66 16 24 O -0.39 -8.93 10.61 -126.22 -1.34 -10.27 16 25 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.09 1.15 8.14 -2.38 -0.02 1.14 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.41 12.65 5.45 -92.70 -0.50 12.14 16 31 H 0.13 4.11 6.38 -2.91 -0.02 4.09 16 32 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 33 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 34 H 0.29 15.06 8.30 -92.71 -0.77 14.29 16 35 H 0.10 6.24 5.77 -2.91 -0.02 6.22 16 36 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.17 7.76 -2.39 -0.02 1.15 16 Total: -1.00 -73.13 329.53 1.81 -71.32 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: 0.57 Total: 34.66 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 4.20 Total: -21.36 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -2.23 Total: -74.40 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -2.76 Total: -52.34 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -73.13 1.81 -71.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179026852.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.157 kcal (2) G-P(sol) polarization free energy of solvation -73.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds