Wall clock time and date at job start Tue Mar 31 2020 07:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47361 * 2 1 4 4 C 1.50703 * 109.46940 * 239.99571 * 2 1 3 5 5 H 1.07994 * 120.00062 * 240.00494 * 4 2 1 6 6 C 1.37876 * 119.99612 * 60.00490 * 4 2 1 7 7 N 1.31516 * 120.00339 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99911 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47476 * 89.99931 * 8 6 4 10 10 H 1.48501 * 109.47167 * 209.99700 * 8 6 4 11 11 H 1.48498 * 109.46993 * 329.99625 * 8 6 4 12 12 C 1.53007 * 109.47104 * 120.00090 * 2 1 3 13 13 O 1.45197 * 109.46828 * 299.99979 * 12 2 1 14 14 C 1.34717 * 116.99671 * 180.02562 * 13 12 2 15 15 O 1.21460 * 119.99871 * 359.97438 * 14 13 12 16 16 C 1.47739 * 119.99625 * 179.97438 * 14 13 12 17 17 C 1.39759 * 120.08215 * 359.97438 * 16 14 13 18 18 C 1.38037 * 120.13918 * 180.02562 * 17 16 14 19 19 C 1.38110 * 120.30279 * 359.73905 * 18 17 16 20 20 C 1.39667 * 120.15755 * 0.51737 * 19 18 17 21 21 C 1.47860 * 120.07772 * 179.76256 * 20 19 18 22 22 N 1.34777 * 119.99422 * 359.72153 * 21 20 19 23 23 O 1.21553 * 120.00288 * 179.72455 * 21 20 19 24 24 C 1.39332 * 119.85526 * 359.48928 * 20 19 18 25 25 H 1.09010 * 109.46876 * 300.00136 * 1 2 3 26 26 H 1.08997 * 109.46893 * 59.99824 * 1 2 3 27 27 H 1.08999 * 109.47195 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47107 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47261 * 299.99951 * 3 2 1 30 30 H 1.08996 * 109.47147 * 60.00238 * 3 2 1 31 31 H 0.96997 * 120.00618 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47185 * 179.97438 * 12 2 1 33 33 H 1.09007 * 109.47173 * 59.99516 * 12 2 1 34 34 H 1.08002 * 119.92755 * 0.04562 * 17 16 14 35 35 H 1.07999 * 119.84882 * 180.02562 * 18 17 16 36 36 H 1.08003 * 119.92318 * 180.25927 * 19 18 17 37 37 H 0.97001 * 120.00485 * 0.02562 * 22 21 20 38 38 H 0.97005 * 119.99790 * 179.72357 * 22 21 20 39 39 H 1.07998 * 120.15051 * 180.23019 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3212 -1.1205 -4.0079 9 1 1.3425 -2.1617 -4.4118 10 1 2.4864 -0.1416 -5.1123 11 1 3.6291 -1.7585 -3.7122 12 6 2.0400 -0.7213 1.2493 13 8 1.5560 -0.0368 2.4348 14 6 1.9184 -0.5484 3.6272 15 8 2.6191 -1.5394 3.6751 16 6 1.4635 0.0959 4.8764 17 6 0.6577 1.2365 4.8231 18 6 0.2324 1.8398 5.9896 19 6 0.5951 1.3185 7.2160 20 6 1.4044 0.1823 7.2839 21 6 1.7959 -0.3712 8.5979 22 7 1.3762 0.2241 9.7319 23 8 2.4962 -1.3631 8.6554 24 6 1.8375 -0.4319 6.1107 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 0.7088 1.1613 -3.4843 32 1 3.1300 -0.7217 1.2491 33 1 1.6766 -1.7490 1.2493 34 1 0.3668 1.6466 3.8672 35 1 -0.3905 2.7208 5.9429 36 1 0.2554 1.7931 8.1248 37 1 0.8171 1.0154 9.6861 38 1 1.6297 -0.1413 10.5940 39 1 2.4604 -1.3129 6.1576 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184768014.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:21 Heat of formation + Delta-G solvation = -107.642871 kcal Electronic energy + Delta-G solvation = -22531.851293 eV Core-core repulsion = 19018.194493 eV Total energy + Delta-G solvation = -3513.656800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.60095 -39.74450 -38.19853 -36.54808 -34.86811 -34.21667 -31.67273 -31.35271 -31.11506 -26.08411 -25.64383 -25.22522 -24.51606 -23.71676 -21.47525 -20.38013 -18.87575 -18.69129 -17.26830 -16.93739 -16.35132 -15.91485 -15.82415 -15.75307 -15.03629 -14.80148 -14.67426 -14.34902 -14.02594 -13.28435 -13.16489 -12.86378 -12.56982 -12.22646 -11.96195 -11.54501 -11.50672 -11.20112 -10.98199 -10.71905 -10.44344 -10.44018 -10.27874 -10.13512 -10.09051 -9.92564 -9.46041 -9.34419 -9.32957 -9.31594 -8.78109 -8.39140 -6.03707 -4.15149 0.36112 0.78697 2.32579 2.92796 2.94176 3.24374 3.27465 3.34399 3.39207 3.66795 4.36529 4.39365 4.47626 4.55876 4.92068 4.98389 5.13410 5.22998 5.42943 5.60004 5.86693 5.98880 6.06727 6.08888 6.10069 6.36056 6.44301 6.47892 6.71088 6.92879 6.95914 6.99866 7.10476 7.11804 7.37738 7.59882 7.68672 7.89083 8.03063 8.10499 8.19482 8.37280 8.84784 9.50542 10.97578 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.038647 B = 0.003052 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.338652 B = 9170.654748 C = 9703.934870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.071 3.929 3 C -0.130 4.130 4 C -0.512 4.512 5 H 0.057 0.943 6 C 0.069 3.931 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.084 3.916 13 O -0.343 6.343 14 C 0.497 3.503 15 O -0.510 6.510 16 C -0.121 4.121 17 C -0.032 4.032 18 C -0.139 4.139 19 C -0.059 4.059 20 C -0.157 4.157 21 C 0.566 3.434 22 N -0.852 5.852 23 O -0.534 6.534 24 C 0.001 3.999 25 H 0.016 0.984 26 H 0.084 0.916 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.084 0.916 30 H 0.016 0.984 31 H 0.261 0.739 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.150 0.850 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.400 0.600 38 H 0.406 0.594 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.034 5.707 20.575 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.070 3.930 3 C -0.187 4.187 4 C -0.550 4.550 5 H 0.075 0.925 6 C -0.133 4.133 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.012 3.988 13 O -0.258 6.258 14 C 0.341 3.659 15 O -0.400 6.400 16 C -0.123 4.123 17 C -0.050 4.050 18 C -0.157 4.157 19 C -0.078 4.078 20 C -0.160 4.160 21 C 0.353 3.647 22 N -0.416 5.416 23 O -0.411 6.411 24 C -0.018 4.018 25 H 0.035 0.965 26 H 0.103 0.897 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.103 0.897 30 H 0.035 0.965 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.167 0.833 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.230 0.770 38 H 0.237 0.763 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.445 4.885 20.226 21.091 hybrid contribution 0.203 -0.315 -0.537 0.655 sum -3.242 4.570 19.688 20.470 Atomic orbital electron populations 1.21778 0.97298 0.99018 1.00638 1.18251 0.93427 0.93081 0.88211 1.21772 0.98166 0.98153 1.00637 1.20941 1.31990 1.12310 0.89783 0.92457 1.24849 0.94788 0.94894 0.98787 1.69822 1.36364 1.22580 1.23326 0.86535 0.79316 0.79379 0.82437 1.20629 1.21149 1.19882 1.23746 0.98380 0.95902 0.80788 1.86551 1.69033 1.55690 1.14567 1.21003 0.77816 0.82073 0.84957 1.90818 1.35577 1.25261 1.88341 1.19280 1.03206 0.98471 0.91300 1.21876 0.91152 0.91877 1.00145 1.21138 1.01740 1.01228 0.91589 1.21491 0.94163 0.93589 0.98574 1.19723 1.04069 0.98986 0.93220 1.18187 0.79192 0.82968 0.84404 1.43722 1.56054 1.33353 1.08515 1.90856 1.37344 1.25421 1.87503 1.21399 0.93562 0.97596 0.89270 0.96507 0.89692 0.95785 0.95775 0.89702 0.96495 0.92894 0.92324 0.92335 0.83254 0.84289 0.85163 0.76999 0.76328 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.11 37.16 0.30 -2.75 16 2 C 0.07 1.71 0.58 -155.66 -0.09 1.61 16 3 C -0.13 -3.05 8.11 37.15 0.30 -2.75 16 4 C -0.51 -13.60 8.01 -34.44 -0.28 -13.88 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 7 N -0.88 -23.71 9.35 55.43 0.52 -23.19 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.08 1.87 4.27 37.16 0.16 2.02 16 13 O -0.34 -6.73 8.12 -40.54 -0.33 -7.06 16 14 C 0.50 9.12 7.90 34.61 0.27 9.40 16 15 O -0.51 -10.68 16.13 -19.23 -0.31 -10.99 16 16 C -0.12 -1.74 5.87 -105.03 -0.62 -2.36 16 17 C -0.03 -0.37 9.61 -39.09 -0.38 -0.74 16 18 C -0.14 -1.13 10.02 -39.70 -0.40 -1.52 16 19 C -0.06 -0.44 9.54 -39.10 -0.37 -0.81 16 20 C -0.16 -1.67 5.87 -105.02 -0.62 -2.28 16 21 C 0.57 6.10 8.05 -12.32 -0.10 6.00 16 22 N -0.85 -4.85 8.82 30.53 0.27 -4.58 16 23 O -0.53 -8.15 17.18 5.32 0.09 -8.06 16 24 C 0.00 0.01 9.14 -38.76 -0.35 -0.34 16 25 H 0.02 0.35 7.68 -51.92 -0.40 -0.05 16 26 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 30 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 31 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.15 1.69 7.60 -52.49 -0.40 1.29 16 35 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.13 0.42 6.39 -52.48 -0.34 0.09 16 37 H 0.40 0.99 6.85 -40.82 -0.28 0.71 16 38 H 0.41 1.81 8.93 -40.82 -0.36 1.44 16 39 H 0.15 2.30 7.23 -52.49 -0.38 1.92 16 LS Contribution 331.83 15.07 5.00 5.00 Total: -1.00 -32.28 331.83 -6.88 -39.16 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -4.84 Total: 0.68 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -2.26 Total: -6.69 kcal Atomic # 7 Polarization: -28.56 SS G_CDS: 0.79 Total: -27.77 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.55 Total: -26.11 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.28 -6.88 -39.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184768014.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.485 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds