Wall clock time and date at job start Tue Mar 31 2020 07:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47361 * 2 1 4 4 C 1.50703 * 109.46940 * 239.99571 * 2 1 3 5 5 H 1.07994 * 120.00062 * 240.00494 * 4 2 1 6 6 C 1.37876 * 119.99612 * 60.00490 * 4 2 1 7 7 N 1.31516 * 120.00339 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99911 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47476 * 89.99931 * 8 6 4 10 10 H 1.48501 * 109.47167 * 209.99700 * 8 6 4 11 11 H 1.48498 * 109.46993 * 329.99625 * 8 6 4 12 12 C 1.53007 * 109.47104 * 120.00090 * 2 1 3 13 13 O 1.45197 * 109.46828 * 299.99979 * 12 2 1 14 14 C 1.34717 * 116.99671 * 180.02562 * 13 12 2 15 15 O 1.21460 * 119.99871 * 359.97438 * 14 13 12 16 16 C 1.47739 * 119.99625 * 179.97438 * 14 13 12 17 17 C 1.39759 * 120.08215 * 359.97438 * 16 14 13 18 18 C 1.38037 * 120.13918 * 180.02562 * 17 16 14 19 19 C 1.38110 * 120.30279 * 359.73905 * 18 17 16 20 20 C 1.39667 * 120.15755 * 0.51737 * 19 18 17 21 21 C 1.47860 * 120.07772 * 179.76256 * 20 19 18 22 22 N 1.34777 * 119.99422 * 359.72153 * 21 20 19 23 23 O 1.21553 * 120.00288 * 179.72455 * 21 20 19 24 24 C 1.39332 * 119.85526 * 359.48928 * 20 19 18 25 25 H 1.09010 * 109.46876 * 300.00136 * 1 2 3 26 26 H 1.08997 * 109.46893 * 59.99824 * 1 2 3 27 27 H 1.08999 * 109.47195 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47107 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47261 * 299.99951 * 3 2 1 30 30 H 1.08996 * 109.47147 * 60.00238 * 3 2 1 31 31 H 0.96997 * 120.00618 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47185 * 179.97438 * 12 2 1 33 33 H 1.09007 * 109.47173 * 59.99516 * 12 2 1 34 34 H 1.08002 * 119.92755 * 0.04562 * 17 16 14 35 35 H 1.07999 * 119.84882 * 180.02562 * 18 17 16 36 36 H 1.08003 * 119.92318 * 180.25927 * 19 18 17 37 37 H 0.97001 * 120.00485 * 0.02562 * 22 21 20 38 38 H 0.97005 * 119.99790 * 179.72357 * 22 21 20 39 39 H 1.07998 * 120.15051 * 180.23019 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3212 -1.1205 -4.0079 9 1 1.3425 -2.1617 -4.4118 10 1 2.4864 -0.1416 -5.1123 11 1 3.6291 -1.7585 -3.7122 12 6 2.0400 -0.7213 1.2493 13 8 1.5560 -0.0368 2.4348 14 6 1.9184 -0.5484 3.6272 15 8 2.6191 -1.5394 3.6751 16 6 1.4635 0.0959 4.8764 17 6 0.6577 1.2365 4.8231 18 6 0.2324 1.8398 5.9896 19 6 0.5951 1.3185 7.2160 20 6 1.4044 0.1823 7.2839 21 6 1.7959 -0.3712 8.5979 22 7 1.3762 0.2241 9.7319 23 8 2.4962 -1.3631 8.6554 24 6 1.8375 -0.4319 6.1107 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 0.7088 1.1613 -3.4843 32 1 3.1300 -0.7217 1.2491 33 1 1.6766 -1.7490 1.2493 34 1 0.3668 1.6466 3.8672 35 1 -0.3905 2.7208 5.9429 36 1 0.2554 1.7931 8.1248 37 1 0.8171 1.0154 9.6861 38 1 1.6297 -0.1413 10.5940 39 1 2.4604 -1.3129 6.1576 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184768014.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:20 Heat of formation + Delta-G solvation = -129.032124 kcal Electronic energy + Delta-G solvation = -22532.778801 eV Core-core repulsion = 19018.194493 eV Total energy + Delta-G solvation = -3514.584308 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.75457 -40.91409 -39.18697 -38.22198 -36.64777 -34.98357 -33.33243 -32.34701 -32.19009 -27.77102 -27.56453 -27.19530 -25.39296 -24.94000 -22.41343 -21.51399 -20.72491 -19.63188 -18.34240 -18.06336 -17.71635 -17.40817 -17.29573 -17.01486 -16.58161 -15.91582 -15.60196 -15.34331 -14.93182 -14.88249 -14.82619 -14.59246 -13.69451 -13.64664 -13.29654 -13.16860 -13.00748 -12.84027 -12.64128 -12.50459 -12.32912 -12.14449 -11.75569 -11.75348 -11.32708 -11.30946 -11.19253 -10.78440 -10.74585 -10.40703 -10.22667 -10.13937 -8.05626 -6.23343 -0.52106 -0.13712 1.31003 1.42541 1.44157 1.52234 1.64311 1.86894 2.42819 2.47679 2.75277 3.17863 3.54444 3.73465 3.78763 3.97932 4.05782 4.23707 4.24387 4.30144 4.53346 4.62358 4.82030 4.83802 5.04692 5.05681 5.18766 5.20306 5.21878 5.23545 5.35380 5.51798 5.64207 5.64468 5.66038 5.84452 6.08793 6.17307 6.36831 6.38343 6.65031 6.81105 7.25159 7.44495 8.94041 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.038647 B = 0.003052 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.338652 B = 9170.654748 C = 9703.934870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.063 3.937 3 C -0.119 4.119 4 C -0.536 4.536 5 H 0.046 0.954 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.951 3.049 9 H -0.277 1.277 10 H -0.279 1.279 11 H -0.276 1.276 12 C 0.096 3.904 13 O -0.340 6.340 14 C 0.495 3.505 15 O -0.548 6.548 16 C -0.146 4.146 17 C -0.035 4.035 18 C -0.122 4.122 19 C -0.029 4.029 20 C -0.162 4.162 21 C 0.563 3.437 22 N -0.821 5.821 23 O -0.592 6.592 24 C -0.019 4.019 25 H 0.037 0.963 26 H 0.065 0.935 27 H 0.017 0.983 28 H 0.018 0.982 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.263 0.737 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.150 0.850 35 H 0.184 0.816 36 H 0.187 0.813 37 H 0.421 0.579 38 H 0.415 0.585 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.775 8.155 22.738 24.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.063 3.937 3 C -0.177 4.177 4 C -0.574 4.574 5 H 0.065 0.935 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.777 3.223 9 H -0.203 1.203 10 H -0.205 1.205 11 H -0.201 1.201 12 C 0.022 3.978 13 O -0.255 6.255 14 C 0.342 3.658 15 O -0.441 6.441 16 C -0.148 4.148 17 C -0.053 4.053 18 C -0.139 4.139 19 C -0.047 4.047 20 C -0.165 4.165 21 C 0.350 3.650 22 N -0.386 5.386 23 O -0.473 6.473 24 C -0.038 4.038 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.168 0.832 35 H 0.202 0.798 36 H 0.204 0.796 37 H 0.254 0.746 38 H 0.248 0.752 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.225 7.388 22.432 24.188 hybrid contribution 0.687 -0.995 -1.052 1.603 sum -4.538 6.392 21.380 22.772 Atomic orbital electron populations 1.21630 0.96813 0.98615 1.00599 1.18263 0.93813 0.93344 0.88280 1.21625 0.97700 0.97733 1.00598 1.21200 1.32448 1.12500 0.91302 0.93535 1.25466 0.94956 0.95550 1.01010 1.69918 1.36600 1.23134 1.23904 0.85671 0.78640 0.78483 0.79504 1.20283 1.20472 1.20059 1.23338 0.97586 0.95313 0.81523 1.86528 1.69094 1.55401 1.14527 1.21832 0.76860 0.81643 0.85506 1.90789 1.37505 1.27121 1.88665 1.19049 1.06155 1.00502 0.89056 1.22019 0.90542 0.90798 1.01929 1.21623 1.00574 1.01592 0.90137 1.22066 0.90818 0.91082 1.00699 1.19811 1.04682 1.00042 0.91975 1.18295 0.78772 0.82470 0.85512 1.43471 1.54611 1.33097 1.07458 1.90840 1.40161 1.28090 1.88229 1.21222 0.94493 0.97517 0.90570 0.94442 0.91604 0.96342 0.96329 0.91615 0.94431 0.92738 0.93376 0.93362 0.83224 0.79825 0.79616 0.74603 0.75208 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.11 71.98 0.58 -5.04 16 2 C 0.06 3.11 0.58 -52.93 -0.03 3.08 16 3 C -0.12 -5.62 8.11 71.98 0.58 -5.04 16 4 C -0.54 -29.09 8.01 25.60 0.21 -28.88 16 5 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 6 C 0.03 1.62 5.15 84.65 0.44 2.06 16 7 N -0.90 -48.41 9.35 21.45 0.20 -48.21 16 8 Si 0.95 42.84 29.54 68.60 2.03 44.86 16 9 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 C 0.10 4.38 4.27 71.98 0.31 4.69 16 13 O -0.34 -13.63 8.12 -56.27 -0.46 -14.08 16 14 C 0.49 18.98 7.90 70.33 0.56 19.54 16 15 O -0.55 -24.62 16.13 19.96 0.32 -24.30 16 16 C -0.15 -4.24 5.87 -20.13 -0.12 -4.36 16 17 C -0.03 -0.71 9.61 22.59 0.22 -0.49 16 18 C -0.12 -1.33 10.02 22.19 0.22 -1.11 16 19 C -0.03 -0.27 9.54 22.58 0.22 -0.05 16 20 C -0.16 -3.12 5.87 -20.12 -0.12 -3.24 16 21 C 0.56 11.25 8.05 86.79 0.70 11.95 16 22 N -0.82 -6.34 8.82 -175.59 -1.55 -7.89 16 23 O -0.59 -18.50 17.18 -3.88 -0.07 -18.57 16 24 C -0.02 -0.52 9.14 22.80 0.21 -0.31 16 25 H 0.04 1.56 7.68 -2.38 -0.02 1.54 16 26 H 0.07 3.37 6.07 -2.39 -0.01 3.36 16 27 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 3.37 6.07 -2.39 -0.01 3.35 16 30 H 0.04 1.57 7.68 -2.39 -0.02 1.55 16 31 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 32 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.15 3.03 7.60 -2.91 -0.02 3.01 16 35 H 0.18 0.53 8.06 -2.91 -0.02 0.50 16 36 H 0.19 -0.30 6.39 -2.91 -0.02 -0.32 16 37 H 0.42 -0.29 6.85 -92.71 -0.64 -0.92 16 38 H 0.42 2.38 8.93 -92.70 -0.83 1.55 16 39 H 0.12 4.01 7.23 -2.91 -0.02 3.99 16 Total: -1.00 -75.23 331.83 4.08 -71.16 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -0.36 Total: 4.25 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 3.97 Total: -7.22 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -1.35 Total: -56.10 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: -0.20 Total: -56.95 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -75.23 4.08 -71.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184768014.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.876 kcal (2) G-P(sol) polarization free energy of solvation -75.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds