Wall clock time and date at job start Tue Mar 31 2020 06:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35911 * 116.99984 * 2 1 4 4 C 1.38489 * 119.98549 * 0.02562 * 3 2 1 5 5 C 1.39489 * 119.79624 * 180.02562 * 4 3 2 6 6 C 1.47861 * 120.11901 * 179.97438 * 5 4 3 7 7 O 1.21551 * 120.00140 * 353.11806 * 6 5 4 8 8 N 1.34776 * 119.99965 * 173.10939 * 6 5 4 9 9 C 1.47574 * 134.49257 * 174.46420 * 8 6 5 10 10 C 1.53942 * 86.11853 * 155.36185 * 9 8 6 11 11 O 1.42909 * 113.74024 * 269.15421 * 10 9 8 12 12 C 1.50700 * 113.74565 * 137.95482 * 10 9 8 13 13 H 1.08003 * 119.99916 * 1.91727 * 12 10 9 14 14 C 1.37875 * 120.00247 * 181.92732 * 12 10 9 15 15 N 1.31514 * 119.99724 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00241 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47451 * 179.97438 * 16 14 12 18 18 H 1.48498 * 109.46945 * 299.99796 * 16 14 12 19 19 H 1.48496 * 109.47190 * 59.99697 * 16 14 12 20 20 C 1.47813 * 134.45478 * 354.33072 * 8 6 5 21 21 C 1.39600 * 119.76061 * 0.28111 * 5 4 3 22 22 C 1.37965 * 119.96866 * 359.43954 * 21 5 4 23 23 C 1.38293 * 120.20235 * 0.56094 * 22 21 5 24 24 C 1.50699 * 119.87780 * 179.69783 * 23 22 21 25 25 H 1.09007 * 109.46725 * 299.99630 * 1 2 3 26 26 H 1.08999 * 109.47415 * 59.99824 * 1 2 3 27 27 H 1.09001 * 109.47154 * 180.02562 * 1 2 3 28 28 H 1.08006 * 120.10434 * 359.97438 * 4 3 2 29 29 H 1.09001 * 113.77070 * 41.05481 * 9 8 6 30 30 H 1.09005 * 113.87161 * 269.67586 * 9 8 6 31 31 H 0.96695 * 114.00088 * 178.07432 * 11 10 9 32 32 H 0.97001 * 120.00194 * 180.02562 * 15 14 12 33 33 H 1.09001 * 113.76520 * 90.37756 * 20 8 6 34 34 H 1.08998 * 113.83785 * 318.91810 * 20 8 6 35 35 H 1.08001 * 120.01295 * 179.72944 * 21 5 4 36 36 H 1.07993 * 119.89985 * 180.28652 * 22 21 5 37 37 H 1.08992 * 109.47223 * 270.01946 * 24 23 22 38 38 H 1.09004 * 109.47350 * 30.02341 * 24 23 22 39 39 H 1.09000 * 109.47062 * 150.01943 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3723 0.0005 5 6 1.9288 3.6130 0.0000 6 6 1.1302 4.8574 0.0000 7 8 -0.0777 4.8044 -0.1257 8 7 1.7415 6.0504 0.1395 9 6 1.2929 7.4552 0.0831 10 6 2.5103 7.7701 0.9711 11 8 2.2303 7.7162 2.3715 12 6 3.2488 9.0202 0.5674 13 1 2.8890 9.6173 -0.2575 14 6 4.3837 9.4016 1.2510 15 7 4.8216 8.6747 2.2558 16 14 5.2995 10.9508 0.7502 17 1 6.4763 11.1385 1.6361 18 1 5.7545 10.8235 -0.6577 19 1 4.3953 12.1222 0.8741 20 6 3.1302 6.4763 0.4129 21 6 3.3234 3.6757 -0.0070 22 6 4.0655 2.5126 -0.0017 23 6 3.4322 1.2832 -0.0011 24 6 4.2500 0.0175 -0.0022 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.2128 2.3174 0.0005 29 1 0.3349 7.6305 0.5726 30 1 1.3490 7.8966 -0.9120 31 1 2.9992 7.8845 2.9331 32 1 5.6199 8.9432 2.7370 33 1 3.7282 6.6279 -0.4858 34 1 3.6365 5.8715 1.1652 35 1 3.8211 4.6341 -0.0119 36 1 5.1443 2.5624 -0.0025 37 1 4.4463 -0.2874 -1.0300 38 1 5.1952 0.1951 0.5110 39 1 3.7001 -0.7708 0.5119 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186845186.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:03 Heat of formation + Delta-G solvation = -56.157081 kcal Electronic energy + Delta-G solvation = -23184.098749 eV Core-core repulsion = 19672.674540 eV Total energy + Delta-G solvation = -3511.424209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.43861 -39.40650 -37.59938 -36.90275 -34.01530 -32.81893 -32.24908 -30.21117 -28.94226 -27.67805 -26.91439 -25.47946 -25.07326 -22.15118 -22.01666 -20.18698 -19.00742 -17.80077 -17.21147 -16.42869 -15.87283 -15.81331 -15.60826 -15.12346 -14.85278 -14.66324 -14.14957 -13.88441 -13.62401 -13.55829 -13.18342 -12.74308 -12.46178 -12.21540 -12.18180 -12.07086 -11.90863 -11.59958 -11.41106 -11.11283 -11.05738 -11.02025 -10.95458 -10.53793 -10.32178 -9.68855 -9.27580 -8.80066 -8.78578 -8.41630 -8.13744 -7.85965 -6.41828 -4.52482 0.99693 1.47649 3.14761 3.18693 3.20580 3.21044 3.23416 3.48381 4.06348 4.16872 4.68144 4.82363 4.82783 5.01100 5.04517 5.09784 5.23738 5.27597 5.43150 5.52468 5.56366 5.60535 5.67112 5.79175 5.89847 6.03634 6.15584 6.23592 6.33759 6.43390 6.47833 6.50147 6.60648 6.63676 6.79843 7.05652 7.32917 7.60078 7.78669 8.39839 8.50630 8.69904 9.18766 9.39971 10.64872 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024638 B = 0.004005 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.176462 B = 6989.364335 C = 7760.342809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.110 3.890 4 C -0.150 4.150 5 C -0.087 4.087 6 C 0.569 3.431 7 O -0.563 6.563 8 N -0.624 5.624 9 C 0.112 3.888 10 C 0.240 3.760 11 O -0.572 6.572 12 C -0.539 4.539 13 H 0.071 0.929 14 C 0.074 3.926 15 N -0.897 5.897 16 Si 0.908 3.092 17 H -0.285 1.285 18 H -0.274 1.274 19 H -0.273 1.273 20 C 0.072 3.928 21 C -0.125 4.125 22 C -0.093 4.093 23 C -0.100 4.100 24 C -0.105 4.105 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.098 0.902 28 H 0.139 0.861 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.392 0.608 32 H 0.274 0.726 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.147 0.853 36 H 0.134 0.866 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 -13.497 -3.952 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.066 3.934 4 C -0.170 4.170 5 C -0.090 4.090 6 C 0.359 3.641 7 O -0.444 6.444 8 N -0.357 5.357 9 C -0.009 4.009 10 C 0.198 3.802 11 O -0.383 6.383 12 C -0.577 4.577 13 H 0.090 0.910 14 C -0.129 4.129 15 N -0.537 5.537 16 Si 0.735 3.265 17 H -0.210 1.210 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.051 4.051 21 C -0.144 4.144 22 C -0.111 4.111 23 C -0.101 4.101 24 C -0.161 4.161 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.117 0.883 28 H 0.156 0.844 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.247 0.753 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.164 0.836 36 H 0.152 0.848 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.919 -14.024 -4.095 14.639 hybrid contribution 0.888 1.015 -0.049 1.350 sum -0.031 -13.008 -4.145 13.653 Atomic orbital electron populations 1.23067 0.78420 1.03663 1.01827 1.86024 1.21289 1.26511 1.89110 1.18635 0.91686 0.84048 0.99071 1.21278 1.00701 0.90793 1.04198 1.19796 0.93748 0.93011 1.02441 1.17878 0.86738 0.82521 0.76970 1.90685 1.14091 1.86955 1.52693 1.50085 1.13093 1.04731 1.67744 1.23488 1.00373 0.77309 0.99771 1.19844 0.88846 0.90902 0.80589 1.86074 1.41287 1.94073 1.16888 1.21462 1.09860 1.09166 1.17234 0.91044 1.25061 0.96509 0.97134 0.94233 1.69391 1.24710 1.38744 1.20875 0.86391 0.78928 0.82595 0.78633 1.20998 1.19879 1.19861 1.24495 0.83139 0.97601 0.99833 1.21972 0.93037 1.00167 0.99208 1.20872 1.00044 0.90684 0.99525 1.19414 0.90521 0.96341 1.03853 1.20629 0.98825 0.94434 1.02249 0.92498 0.92507 0.88322 0.84363 0.90952 0.89371 0.75342 0.91586 0.89620 0.90540 0.83557 0.84811 0.91340 0.91513 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.05 9.52 -19.46 -0.19 -4.24 16 3 C 0.11 1.61 6.65 -39.28 -0.26 1.35 16 4 C -0.15 -2.47 8.58 -39.02 -0.33 -2.80 16 5 C -0.09 -1.59 5.87 -104.98 -0.62 -2.21 16 6 C 0.57 12.24 7.98 -12.32 -0.10 12.14 16 7 O -0.56 -13.40 17.10 5.32 0.09 -13.31 16 8 N -0.62 -13.40 3.60 -179.24 -0.64 -14.05 16 9 C 0.11 2.44 8.23 -2.97 -0.02 2.42 16 10 C 0.24 5.65 1.40 -90.85 -0.13 5.52 16 11 O -0.57 -14.57 13.49 -35.23 -0.48 -15.04 16 12 C -0.54 -13.20 8.61 -34.44 -0.30 -13.50 16 13 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 14 C 0.07 1.78 5.39 -17.82 -0.10 1.69 16 15 N -0.90 -22.13 11.20 55.43 0.62 -21.51 16 16 Si 0.91 19.03 29.54 -169.99 -5.02 14.01 16 17 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 20 C 0.07 1.50 5.60 -2.84 -0.02 1.48 16 21 C -0.13 -2.04 9.07 -39.17 -0.36 -2.40 16 22 C -0.09 -1.28 9.67 -39.66 -0.38 -1.66 16 23 C -0.10 -1.35 5.90 -104.39 -0.62 -1.96 16 24 C -0.10 -1.08 9.78 36.01 0.35 -0.73 16 25 H 0.06 0.56 7.66 -51.92 -0.40 0.16 16 26 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.14 2.21 5.90 -52.48 -0.31 1.90 16 29 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 30 H 0.09 1.74 8.09 -51.93 -0.42 1.31 16 31 H 0.39 10.01 6.60 45.56 0.30 10.31 16 32 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 33 H 0.09 1.69 7.99 -51.93 -0.41 1.27 16 34 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 35 H 0.15 2.40 4.11 -52.49 -0.22 2.19 16 36 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 39 H 0.07 0.72 7.52 -51.93 -0.39 0.33 16 LS Contribution 327.45 15.07 4.93 4.93 Total: -1.00 -28.87 327.45 -6.82 -35.69 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -4.26 Total: 12.92 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -1.88 Total: 0.59 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: -0.02 Total: -35.56 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.57 Total: -32.59 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.87 -6.82 -35.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186845186.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.464 kcal (2) G-P(sol) polarization free energy of solvation -28.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds