Wall clock time and date at job start Tue Mar 31 2020 06:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35911 * 116.99984 * 2 1 4 4 C 1.38489 * 119.98549 * 0.02562 * 3 2 1 5 5 C 1.39489 * 119.79624 * 180.02562 * 4 3 2 6 6 C 1.47861 * 120.11901 * 179.97438 * 5 4 3 7 7 O 1.21551 * 120.00140 * 353.11806 * 6 5 4 8 8 N 1.34776 * 119.99965 * 173.10939 * 6 5 4 9 9 C 1.47574 * 134.49257 * 174.46420 * 8 6 5 10 10 C 1.53942 * 86.11853 * 155.36185 * 9 8 6 11 11 O 1.42909 * 113.74024 * 269.15421 * 10 9 8 12 12 C 1.50700 * 113.74565 * 137.95482 * 10 9 8 13 13 H 1.08003 * 119.99916 * 1.91727 * 12 10 9 14 14 C 1.37875 * 120.00247 * 181.92732 * 12 10 9 15 15 N 1.31514 * 119.99724 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00241 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47451 * 179.97438 * 16 14 12 18 18 H 1.48498 * 109.46945 * 299.99796 * 16 14 12 19 19 H 1.48496 * 109.47190 * 59.99697 * 16 14 12 20 20 C 1.47813 * 134.45478 * 354.33072 * 8 6 5 21 21 C 1.39600 * 119.76061 * 0.28111 * 5 4 3 22 22 C 1.37965 * 119.96866 * 359.43954 * 21 5 4 23 23 C 1.38293 * 120.20235 * 0.56094 * 22 21 5 24 24 C 1.50699 * 119.87780 * 179.69783 * 23 22 21 25 25 H 1.09007 * 109.46725 * 299.99630 * 1 2 3 26 26 H 1.08999 * 109.47415 * 59.99824 * 1 2 3 27 27 H 1.09001 * 109.47154 * 180.02562 * 1 2 3 28 28 H 1.08006 * 120.10434 * 359.97438 * 4 3 2 29 29 H 1.09001 * 113.77070 * 41.05481 * 9 8 6 30 30 H 1.09005 * 113.87161 * 269.67586 * 9 8 6 31 31 H 0.96695 * 114.00088 * 178.07432 * 11 10 9 32 32 H 0.97001 * 120.00194 * 180.02562 * 15 14 12 33 33 H 1.09001 * 113.76520 * 90.37756 * 20 8 6 34 34 H 1.08998 * 113.83785 * 318.91810 * 20 8 6 35 35 H 1.08001 * 120.01295 * 179.72944 * 21 5 4 36 36 H 1.07993 * 119.89985 * 180.28652 * 22 21 5 37 37 H 1.08992 * 109.47223 * 270.01946 * 24 23 22 38 38 H 1.09004 * 109.47350 * 30.02341 * 24 23 22 39 39 H 1.09000 * 109.47062 * 150.01943 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3723 0.0005 5 6 1.9288 3.6130 0.0000 6 6 1.1302 4.8574 0.0000 7 8 -0.0777 4.8044 -0.1257 8 7 1.7415 6.0504 0.1395 9 6 1.2929 7.4552 0.0831 10 6 2.5103 7.7701 0.9711 11 8 2.2303 7.7162 2.3715 12 6 3.2488 9.0202 0.5674 13 1 2.8890 9.6173 -0.2575 14 6 4.3837 9.4016 1.2510 15 7 4.8216 8.6747 2.2558 16 14 5.2995 10.9508 0.7502 17 1 6.4763 11.1385 1.6361 18 1 5.7545 10.8235 -0.6577 19 1 4.3953 12.1222 0.8741 20 6 3.1302 6.4763 0.4129 21 6 3.3234 3.6757 -0.0070 22 6 4.0655 2.5126 -0.0017 23 6 3.4322 1.2832 -0.0011 24 6 4.2500 0.0175 -0.0022 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.2128 2.3174 0.0005 29 1 0.3349 7.6305 0.5726 30 1 1.3490 7.8966 -0.9120 31 1 2.9992 7.8845 2.9331 32 1 5.6199 8.9432 2.7370 33 1 3.7282 6.6279 -0.4858 34 1 3.6365 5.8715 1.1652 35 1 3.8211 4.6341 -0.0119 36 1 5.1443 2.5624 -0.0025 37 1 4.4463 -0.2874 -1.0300 38 1 5.1952 0.1951 0.5110 39 1 3.7001 -0.7708 0.5119 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186845186.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:01 Heat of formation + Delta-G solvation = -75.526318 kcal Electronic energy + Delta-G solvation = -23184.938662 eV Core-core repulsion = 19672.674540 eV Total energy + Delta-G solvation = -3512.264122 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -41.76526 -40.85885 -39.15949 -38.19132 -35.87991 -34.15355 -33.96313 -31.40231 -30.54830 -28.56653 -28.25791 -27.20480 -26.65817 -23.44320 -23.14948 -21.74112 -20.57888 -19.44575 -18.81392 -17.81737 -17.21114 -17.16696 -16.82137 -16.65647 -16.36155 -16.16302 -15.88352 -15.10839 -14.88763 -14.63759 -14.47722 -14.39248 -14.08823 -13.81895 -13.42217 -13.21329 -13.05841 -12.97536 -12.82984 -12.75109 -12.36391 -12.22494 -12.20073 -12.17849 -12.07456 -11.41480 -11.04153 -10.64541 -10.24501 -9.98047 -9.62113 -9.23121 -8.25575 -6.42852 -0.27378 0.31345 1.49773 1.52209 1.59044 1.74297 1.82424 2.27482 2.42041 2.73590 2.96666 3.29424 3.68247 3.77058 3.87652 4.05123 4.13105 4.16449 4.31446 4.31782 4.42367 4.50673 4.55638 4.62903 4.68744 4.71374 4.76138 4.82622 4.87442 4.91954 5.16070 5.22546 5.24238 5.32619 5.40555 5.67718 5.73002 5.92340 6.27432 6.62509 6.71445 7.02062 7.30379 7.43647 8.80497 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024638 B = 0.004005 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.176462 B = 6989.364335 C = 7760.342809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.316 6.316 3 C 0.109 3.891 4 C -0.160 4.160 5 C -0.116 4.116 6 C 0.562 3.438 7 O -0.597 6.597 8 N -0.628 5.628 9 C 0.110 3.890 10 C 0.220 3.780 11 O -0.587 6.587 12 C -0.558 4.558 13 H 0.073 0.927 14 C 0.037 3.963 15 N -0.914 5.914 16 Si 0.968 3.032 17 H -0.283 1.283 18 H -0.266 1.266 19 H -0.277 1.277 20 C 0.090 3.910 21 C -0.131 4.131 22 C -0.087 4.087 23 C -0.093 4.093 24 C -0.103 4.103 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.388 0.612 32 H 0.276 0.724 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.142 0.858 36 H 0.168 0.832 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 -14.910 -4.646 15.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.230 6.230 3 C 0.063 3.937 4 C -0.180 4.180 5 C -0.119 4.119 6 C 0.354 3.646 7 O -0.481 6.481 8 N -0.359 5.359 9 C -0.011 4.011 10 C 0.179 3.821 11 O -0.399 6.399 12 C -0.596 4.596 13 H 0.091 0.909 14 C -0.165 4.165 15 N -0.554 5.554 16 Si 0.793 3.207 17 H -0.208 1.208 18 H -0.191 1.191 19 H -0.202 1.202 20 C -0.032 4.032 21 C -0.150 4.150 22 C -0.105 4.105 23 C -0.094 4.094 24 C -0.159 4.159 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.078 0.922 30 H 0.126 0.874 31 H 0.242 0.758 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.159 0.841 36 H 0.185 0.815 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.914 -15.449 -4.795 16.202 hybrid contribution 0.278 1.356 0.188 1.397 sum 1.192 -14.093 -4.607 14.875 Atomic orbital electron populations 1.23328 0.76904 1.05792 1.01623 1.86031 1.22816 1.25385 1.88747 1.18789 0.92370 0.83990 0.98535 1.21285 1.00727 0.91037 1.04906 1.19642 0.94483 0.91950 1.05848 1.18475 0.86702 0.83398 0.76022 1.90643 1.15585 1.87511 1.54393 1.50114 1.13252 1.04711 1.67833 1.23538 0.99203 0.78014 1.00391 1.20125 0.90099 0.92072 0.79773 1.86062 1.41444 1.94243 1.18146 1.21672 1.10404 1.09833 1.17718 0.90864 1.25712 0.97057 0.99521 0.94162 1.69456 1.24925 1.39741 1.21293 0.85452 0.77593 0.79121 0.78532 1.20789 1.19125 1.20237 1.24315 0.82896 0.95883 1.00086 1.21977 0.92222 1.01130 0.99661 1.21216 1.01535 0.89684 0.98054 1.19894 0.90377 0.97736 1.01409 1.20721 0.99120 0.92558 1.03519 0.92873 0.92617 0.85014 0.84937 0.92220 0.87376 0.75772 0.91385 0.88191 0.90656 0.84071 0.81472 0.89811 0.89424 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.32 -7.52 9.52 -92.55 -0.88 -8.40 16 3 C 0.11 3.01 6.65 22.47 0.15 3.16 16 4 C -0.16 -5.27 8.58 22.63 0.19 -5.08 16 5 C -0.12 -4.31 5.87 -20.10 -0.12 -4.42 16 6 C 0.56 24.87 7.98 86.79 0.69 25.57 16 7 O -0.60 -29.54 17.10 -3.87 -0.07 -29.61 16 8 N -0.63 -27.44 3.60 -843.10 -3.03 -30.48 16 9 C 0.11 4.90 8.23 86.49 0.71 5.61 16 10 C 0.22 10.50 1.40 -10.88 -0.02 10.49 16 11 O -0.59 -30.64 13.49 -148.98 -2.01 -32.65 16 12 C -0.56 -27.26 8.61 25.60 0.22 -27.04 16 13 H 0.07 3.46 7.81 -2.91 -0.02 3.44 16 14 C 0.04 1.75 5.39 84.65 0.46 2.21 16 15 N -0.91 -44.80 11.20 21.45 0.24 -44.56 16 16 Si 0.97 38.34 29.54 68.60 2.03 40.37 16 17 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 18 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 19 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 20 C 0.09 3.78 5.60 86.44 0.48 4.27 16 21 C -0.13 -4.17 9.07 22.53 0.20 -3.96 16 22 C -0.09 -2.16 9.67 22.22 0.21 -1.95 16 23 C -0.09 -2.25 5.90 -19.71 -0.12 -2.37 16 24 C -0.10 -1.72 9.78 71.24 0.70 -1.02 16 25 H 0.05 1.01 7.66 -2.38 -0.02 0.99 16 26 H 0.06 1.03 7.66 -2.39 -0.02 1.01 16 27 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.13 4.39 5.90 -2.91 -0.02 4.37 16 29 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.11 4.28 8.09 -2.38 -0.02 4.26 16 31 H 0.39 20.28 6.60 -74.06 -0.49 19.80 16 32 H 0.28 12.87 8.31 -92.71 -0.77 12.09 16 33 H 0.10 3.88 7.99 -2.39 -0.02 3.86 16 34 H 0.08 3.16 6.92 -2.39 -0.02 3.14 16 35 H 0.14 4.54 4.11 -2.91 -0.01 4.53 16 36 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.14 8.08 -2.38 -0.02 1.12 16 39 H 0.07 1.21 7.52 -2.39 -0.02 1.19 16 Total: -1.00 -62.21 327.45 1.76 -60.44 By element: Atomic # 1 Polarization: 37.38 SS G_CDS: 0.60 Total: 37.98 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 4.89 Total: 6.90 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -2.79 Total: -75.03 kcal Atomic # 8 Polarization: -67.70 SS G_CDS: -2.96 Total: -70.66 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -62.21 1.76 -60.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186845186.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.082 kcal (2) G-P(sol) polarization free energy of solvation -62.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds