Wall clock time and date at job start Tue Mar 31 2020 06:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47087 * 2 1 4 4 C 1.53002 * 109.51646 * 304.89895 * 3 2 1 5 5 C 1.52882 * 109.58513 * 184.88125 * 3 2 1 6 6 N 1.47152 * 108.60975 * 187.92442 * 5 3 2 7 7 S 1.65593 * 120.98152 * 230.49876 * 6 5 3 8 8 O 1.42104 * 104.27905 * 153.64884 * 7 6 5 9 9 O 1.42102 * 104.27718 * 25.78664 * 7 6 5 10 10 C 1.81399 * 104.45079 * 269.71813 * 7 6 5 11 11 C 1.53005 * 109.47445 * 179.97438 * 10 7 6 12 12 C 1.50696 * 109.47353 * 179.97438 * 11 10 7 13 13 H 1.08000 * 120.00290 * 0.02562 * 12 11 10 14 14 C 1.37870 * 119.99993 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00258 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47216 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47057 * 120.00171 * 16 14 12 19 19 H 1.48500 * 109.47389 * 240.00151 * 16 14 12 20 20 C 1.47158 * 118.03376 * 50.22676 * 6 5 3 21 21 C 1.53285 * 108.38367 * 309.71392 * 20 6 5 22 22 O 1.42963 * 109.51168 * 65.00168 * 3 2 1 23 23 H 1.09001 * 109.47464 * 300.00125 * 1 2 3 24 24 H 1.08997 * 109.47196 * 59.99924 * 1 2 3 25 25 H 1.09003 * 109.47429 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46980 * 240.00084 * 2 1 3 27 27 H 1.09003 * 109.46880 * 120.00372 * 2 1 3 28 28 H 1.08997 * 109.47259 * 180.09877 * 4 3 2 29 29 H 1.08997 * 109.46828 * 300.10462 * 4 3 2 30 30 H 1.09003 * 109.46621 * 60.09958 * 4 3 2 31 31 H 1.08996 * 109.61924 * 68.10175 * 5 3 2 32 32 H 1.09009 * 109.52140 * 307.68716 * 5 3 2 33 33 H 1.09001 * 109.47190 * 299.99797 * 10 7 6 34 34 H 1.09004 * 109.47089 * 59.99930 * 10 7 6 35 35 H 1.09001 * 109.46962 * 300.00183 * 11 10 7 36 36 H 1.09004 * 109.46832 * 60.00020 * 11 10 7 37 37 H 0.96999 * 120.00397 * 179.97438 * 15 14 12 38 38 H 1.08995 * 109.68015 * 69.44021 * 20 6 5 39 39 H 1.08998 * 109.67439 * 189.95139 * 20 6 5 40 40 H 1.08999 * 109.51286 * 172.22703 * 21 20 6 41 41 H 1.08999 * 109.51548 * 292.32809 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 1.4324 2.1994 -1.1828 5 6 3.5638 1.4472 -0.1226 6 7 4.0461 2.8239 0.0708 7 16 5.0885 3.5217 -1.0103 8 8 4.8396 4.9154 -0.8877 9 8 4.8382 2.8372 -2.2302 10 6 6.7384 3.1118 -0.3775 11 6 7.8019 3.7076 -1.3021 12 6 9.1725 3.3676 -0.7760 13 1 9.2749 2.7845 0.1272 14 6 10.2958 3.8010 -1.4478 15 7 10.1712 4.5115 -2.5474 16 14 11.9948 3.3789 -0.7961 17 1 11.8631 2.5758 0.4460 18 1 12.7354 2.5941 -1.8163 19 1 12.7366 4.6309 -0.5002 20 6 3.5700 3.5644 1.2500 21 6 2.0417 3.4584 1.3027 22 8 1.6622 2.0824 1.2213 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7976 3.2264 -1.1831 29 1 1.7208 1.7108 -2.1135 30 1 0.3460 2.2000 -1.0942 31 1 3.8525 1.0926 -1.1120 32 1 3.9927 0.7974 0.6404 33 1 6.8558 3.5237 0.6248 34 1 6.8548 2.0286 -0.3411 35 1 7.6844 3.2953 -2.3043 36 1 7.6857 4.7908 -1.3389 37 1 10.9615 4.8167 -3.0199 38 1 3.9995 3.1315 2.1533 39 1 3.8635 4.6111 1.1692 40 1 1.6796 3.8811 2.2399 41 1 1.6096 4.0062 0.4653 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190585664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:54 Heat of formation + Delta-G solvation = -126.687379 kcal Electronic energy + Delta-G solvation = -22685.335909 eV Core-core repulsion = 19306.297229 eV Total energy + Delta-G solvation = -3379.038681 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.05788 -36.74357 -35.54500 -35.06958 -34.49386 -33.91726 -31.18756 -30.34233 -28.74258 -26.32032 -25.58432 -24.37088 -22.40024 -21.49817 -19.62377 -18.54441 -17.69687 -16.74133 -16.55058 -15.98028 -15.77758 -15.25316 -14.90723 -14.61999 -14.56770 -14.29217 -14.11125 -13.48222 -13.41685 -12.56301 -12.47591 -12.24596 -12.20199 -12.08858 -11.86395 -11.78467 -11.64656 -11.55101 -11.30717 -11.19223 -11.11442 -10.98965 -10.92710 -10.44696 -10.42277 -10.27722 -10.17530 -9.76317 -9.28951 -8.65038 -8.53189 -6.14953 -4.20706 0.68065 2.91386 3.23710 3.31037 3.34557 3.58947 4.23576 4.35711 4.38590 4.58972 4.66419 4.71681 4.84393 5.02204 5.11700 5.20200 5.21876 5.26092 5.37493 5.42636 5.45045 5.56604 5.58969 5.67425 5.73314 5.75969 5.80030 5.82953 5.89878 6.04657 6.14799 6.23212 6.45114 6.53890 7.10277 7.26388 7.32143 7.78232 8.14667 8.82954 9.44342 10.96098 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.031548 B = 0.003862 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.318438 B = 7247.899805 C = 7359.164180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C 0.107 3.893 4 C -0.181 4.181 5 C 0.095 3.905 6 N -1.008 6.008 7 S 2.588 3.412 8 O -0.963 6.963 9 O -0.961 6.961 10 C -0.588 4.588 11 C 0.027 3.973 12 C -0.520 4.520 13 H 0.062 0.938 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.900 3.100 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.083 3.917 21 C 0.049 3.951 22 O -0.369 6.369 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.265 0.735 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.965 -6.821 7.533 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C 0.066 3.934 4 C -0.239 4.239 5 C -0.031 4.031 6 N -0.844 5.844 7 S 2.688 3.312 8 O -0.954 6.954 9 O -0.952 6.952 10 C -0.721 4.721 11 C -0.012 4.012 12 C -0.560 4.560 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.528 5.528 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.043 4.043 21 C -0.030 4.030 22 O -0.288 6.288 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.259 -6.323 6.768 20.474 hybrid contribution 1.604 -0.267 0.604 1.735 sum -16.654 -6.591 7.371 19.369 Atomic orbital electron populations 1.21768 0.95108 1.01392 1.02452 1.21482 0.96939 0.93228 1.02985 1.21712 0.92937 0.93639 0.85130 1.22466 1.01480 1.01431 0.98476 1.22018 0.94582 0.82837 1.03650 1.58037 1.62337 1.23545 1.40503 1.05788 0.77138 0.74142 0.74172 1.93526 1.84545 1.31126 1.86184 1.93526 1.84465 1.75177 1.42006 1.30484 1.18795 1.10869 1.11961 1.18979 0.92244 0.96568 0.93367 1.21036 0.89637 1.34766 1.10516 0.91978 1.25074 0.99683 0.94872 0.94876 1.69963 1.29972 1.35971 1.16932 0.86406 0.83634 0.78274 0.78939 1.19629 1.20758 1.20761 1.22087 0.95816 0.98046 0.88313 1.22900 0.93789 0.83590 1.02675 1.87945 1.79681 1.23633 1.37534 0.92017 0.92454 0.92871 0.90232 0.90914 0.92097 0.90880 0.91384 0.87860 0.90785 0.86256 0.86247 0.94855 0.94879 0.92553 0.90758 0.87878 0.87961 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.32 37.16 0.35 -0.88 16 2 C -0.11 -0.97 5.23 -26.74 -0.14 -1.11 16 3 C 0.11 1.19 0.80 -90.68 -0.07 1.11 16 4 C -0.18 -2.08 7.59 37.16 0.28 -1.80 16 5 C 0.10 1.16 5.31 -3.75 -0.02 1.14 16 6 N -1.01 -13.98 2.80 -113.30 -0.32 -14.30 16 7 S 2.59 46.69 5.47 -107.50 -0.59 46.10 16 8 O -0.96 -19.70 16.62 -57.54 -0.96 -20.66 16 9 O -0.96 -19.51 16.61 -57.54 -0.96 -20.46 16 10 C -0.59 -11.34 6.12 37.16 0.23 -11.11 16 11 C 0.03 0.70 4.98 -27.88 -0.14 0.57 16 12 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 13 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 16 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 C 0.08 0.97 6.67 -3.54 -0.02 0.95 16 21 C 0.05 0.51 6.60 37.31 0.25 0.76 16 22 O -0.37 -4.26 9.76 -35.23 -0.34 -4.60 16 23 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 24 H 0.06 0.46 6.35 -51.93 -0.33 0.13 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.79 6.12 -51.93 -0.32 0.47 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.68 6.36 -51.93 -0.33 0.35 16 31 H 0.10 1.30 6.86 -51.93 -0.36 0.94 16 32 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 33 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 34 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 35 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 1.23 6.88 -51.93 -0.36 0.87 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.65 6.26 -51.93 -0.33 0.33 16 LS Contribution 334.85 15.07 5.05 5.05 Total: -1.00 -33.79 334.85 -8.72 -42.51 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.61 Total: -0.50 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 0.30 Total: -23.56 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.42 Total: -40.01 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -2.26 Total: -45.72 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 46.69 SS G_CDS: -0.59 Total: 46.10 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.79 -8.72 -42.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190585664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.178 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds