Wall clock time and date at job start Tue Mar 31 2020 06:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47087 * 2 1 4 4 C 1.53002 * 109.51646 * 304.89895 * 3 2 1 5 5 C 1.52882 * 109.58513 * 184.88125 * 3 2 1 6 6 N 1.47152 * 108.60975 * 187.92442 * 5 3 2 7 7 S 1.65593 * 120.98152 * 230.49876 * 6 5 3 8 8 O 1.42104 * 104.27905 * 153.64884 * 7 6 5 9 9 O 1.42102 * 104.27718 * 25.78664 * 7 6 5 10 10 C 1.81399 * 104.45079 * 269.71813 * 7 6 5 11 11 C 1.53005 * 109.47445 * 179.97438 * 10 7 6 12 12 C 1.50696 * 109.47353 * 179.97438 * 11 10 7 13 13 H 1.08000 * 120.00290 * 0.02562 * 12 11 10 14 14 C 1.37870 * 119.99993 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00258 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47216 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47057 * 120.00171 * 16 14 12 19 19 H 1.48500 * 109.47389 * 240.00151 * 16 14 12 20 20 C 1.47158 * 118.03376 * 50.22676 * 6 5 3 21 21 C 1.53285 * 108.38367 * 309.71392 * 20 6 5 22 22 O 1.42963 * 109.51168 * 65.00168 * 3 2 1 23 23 H 1.09001 * 109.47464 * 300.00125 * 1 2 3 24 24 H 1.08997 * 109.47196 * 59.99924 * 1 2 3 25 25 H 1.09003 * 109.47429 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46980 * 240.00084 * 2 1 3 27 27 H 1.09003 * 109.46880 * 120.00372 * 2 1 3 28 28 H 1.08997 * 109.47259 * 180.09877 * 4 3 2 29 29 H 1.08997 * 109.46828 * 300.10462 * 4 3 2 30 30 H 1.09003 * 109.46621 * 60.09958 * 4 3 2 31 31 H 1.08996 * 109.61924 * 68.10175 * 5 3 2 32 32 H 1.09009 * 109.52140 * 307.68716 * 5 3 2 33 33 H 1.09001 * 109.47190 * 299.99797 * 10 7 6 34 34 H 1.09004 * 109.47089 * 59.99930 * 10 7 6 35 35 H 1.09001 * 109.46962 * 300.00183 * 11 10 7 36 36 H 1.09004 * 109.46832 * 60.00020 * 11 10 7 37 37 H 0.96999 * 120.00397 * 179.97438 * 15 14 12 38 38 H 1.08995 * 109.68015 * 69.44021 * 20 6 5 39 39 H 1.08998 * 109.67439 * 189.95139 * 20 6 5 40 40 H 1.08999 * 109.51286 * 172.22703 * 21 20 6 41 41 H 1.08999 * 109.51548 * 292.32809 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 1.4324 2.1994 -1.1828 5 6 3.5638 1.4472 -0.1226 6 7 4.0461 2.8239 0.0708 7 16 5.0885 3.5217 -1.0103 8 8 4.8396 4.9154 -0.8877 9 8 4.8382 2.8372 -2.2302 10 6 6.7384 3.1118 -0.3775 11 6 7.8019 3.7076 -1.3021 12 6 9.1725 3.3676 -0.7760 13 1 9.2749 2.7845 0.1272 14 6 10.2958 3.8010 -1.4478 15 7 10.1712 4.5115 -2.5474 16 14 11.9948 3.3789 -0.7961 17 1 11.8631 2.5758 0.4460 18 1 12.7354 2.5941 -1.8163 19 1 12.7366 4.6309 -0.5002 20 6 3.5700 3.5644 1.2500 21 6 2.0417 3.4584 1.3027 22 8 1.6622 2.0824 1.2213 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7976 3.2264 -1.1831 29 1 1.7208 1.7108 -2.1135 30 1 0.3460 2.2000 -1.0942 31 1 3.8525 1.0926 -1.1120 32 1 3.9927 0.7974 0.6404 33 1 6.8558 3.5237 0.6248 34 1 6.8548 2.0286 -0.3411 35 1 7.6844 3.2953 -2.3043 36 1 7.6857 4.7908 -1.3389 37 1 10.9615 4.8167 -3.0199 38 1 3.9995 3.1315 2.1533 39 1 3.8635 4.6111 1.1692 40 1 1.6796 3.8811 2.2399 41 1 1.6096 4.0062 0.4653 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190585664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:53 Heat of formation + Delta-G solvation = -150.843453 kcal Electronic energy + Delta-G solvation = -22686.383395 eV Core-core repulsion = 19306.297229 eV Total energy + Delta-G solvation = -3380.086167 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.95064 -38.29690 -37.08829 -36.06405 -35.91670 -35.35629 -33.15767 -31.14147 -29.64920 -27.65756 -27.20185 -25.21739 -23.70841 -22.98913 -20.55462 -19.82076 -19.18558 -18.43986 -17.69514 -17.20759 -17.04850 -16.61137 -16.39718 -15.93477 -15.68926 -15.33581 -15.11822 -14.84959 -14.48884 -14.23766 -13.76285 -13.57963 -13.32433 -13.26394 -13.18845 -12.97203 -12.92101 -12.91459 -12.81317 -12.60114 -12.35862 -12.29029 -12.13134 -11.91051 -11.78571 -11.64245 -11.26949 -11.19403 -10.97314 -10.67927 -9.72762 -8.28397 -6.42914 -0.79041 1.39981 1.40549 1.53995 1.63151 2.36414 2.75875 2.79911 3.04808 3.08773 3.57399 3.69762 3.87193 3.96163 4.01667 4.07842 4.18846 4.33084 4.36442 4.45227 4.60549 4.63977 4.66942 4.69590 4.71060 4.87842 4.90837 4.94759 5.10992 5.18589 5.19594 5.22442 5.23500 5.34484 5.50086 5.53920 5.65745 6.03209 6.24777 6.70767 7.27633 8.84062 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.031548 B = 0.003862 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.318438 B = 7247.899805 C = 7359.164180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C 0.106 3.894 4 C -0.183 4.183 5 C 0.085 3.915 6 N -0.999 5.999 7 S 2.611 3.389 8 O -0.991 6.991 9 O -0.988 6.988 10 C -0.587 4.587 11 C 0.020 3.980 12 C -0.540 4.540 13 H 0.075 0.925 14 C -0.004 4.004 15 N -0.934 5.934 16 Si 0.975 3.025 17 H -0.256 1.256 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.075 3.925 21 C 0.047 3.953 22 O -0.371 6.371 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.006 0.994 36 H 0.006 0.994 37 H 0.268 0.732 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.132 0.868 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.400 -8.418 9.670 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C 0.065 3.935 4 C -0.240 4.240 5 C -0.040 4.040 6 N -0.838 5.838 7 S 2.710 3.290 8 O -0.981 6.981 9 O -0.978 6.978 10 C -0.719 4.719 11 C -0.019 4.019 12 C -0.578 4.578 13 H 0.093 0.907 14 C -0.202 4.202 15 N -0.574 5.574 16 Si 0.799 3.201 17 H -0.179 1.179 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.050 4.050 21 C -0.031 4.031 22 O -0.290 6.290 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.025 0.975 36 H 0.024 0.976 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.150 0.850 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.688 -7.924 8.913 22.169 hybrid contribution 1.633 0.229 -0.048 1.649 sum -17.056 -7.695 8.865 20.705 Atomic orbital electron populations 1.21744 0.94496 1.02192 1.02033 1.21526 0.97440 0.91683 1.03859 1.21799 0.91983 0.94877 0.84823 1.22495 1.02428 1.00304 0.98807 1.22321 0.95664 0.81819 1.04185 1.57660 1.60927 1.24535 1.40650 1.04803 0.76806 0.73343 0.74055 1.93483 1.84847 1.33118 1.86701 1.93484 1.84735 1.75554 1.44026 1.30394 1.18159 1.11878 1.11492 1.18831 0.94221 0.95175 0.93636 1.21533 0.90718 1.34656 1.10941 0.90665 1.26131 1.04484 0.94600 0.95024 1.70105 1.31390 1.37335 1.18521 0.85244 0.77855 0.78248 0.78783 1.17936 1.20268 1.20288 1.22394 0.96872 0.97800 0.87957 1.23033 0.92769 0.83353 1.03932 1.87953 1.79611 1.23939 1.37505 0.92730 0.92544 0.91502 0.89277 0.90145 0.94048 0.91174 0.90027 0.88503 0.88527 0.84195 0.84188 0.97532 0.97600 0.92329 0.88358 0.88372 0.85022 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.32 71.98 0.67 -1.39 16 2 C -0.11 -1.65 5.23 30.59 0.16 -1.49 16 3 C 0.11 2.15 0.80 -10.83 -0.01 2.15 16 4 C -0.18 -4.04 7.59 71.98 0.55 -3.50 16 5 C 0.09 1.92 5.31 86.22 0.46 2.38 16 6 N -1.00 -26.40 2.80 -512.37 -1.43 -27.83 16 7 S 2.61 94.78 5.47 -56.49 -0.31 94.47 16 8 O -0.99 -41.32 16.62 -127.65 -2.12 -43.45 16 9 O -0.99 -40.87 16.61 -127.65 -2.12 -42.99 16 10 C -0.59 -22.49 6.12 71.98 0.44 -22.05 16 11 C 0.02 1.07 4.98 29.85 0.15 1.22 16 12 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 13 H 0.08 3.88 7.74 -2.91 -0.02 3.85 16 14 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 15 N -0.93 -56.89 13.29 21.44 0.28 -56.61 16 16 Si 0.98 43.22 29.54 68.60 2.03 45.25 16 17 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 20 C 0.07 1.60 6.67 86.35 0.58 2.17 16 21 C 0.05 0.89 6.60 72.08 0.48 1.37 16 22 O -0.37 -7.63 9.76 -148.98 -1.45 -9.08 16 23 H 0.05 0.85 7.82 -2.39 -0.02 0.83 16 24 H 0.06 0.79 6.35 -2.39 -0.02 0.78 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.04 1.06 6.12 -2.39 -0.01 1.05 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 1.53 6.36 -2.39 -0.02 1.52 16 31 H 0.10 2.33 6.86 -2.39 -0.02 2.31 16 32 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.14 4.71 8.14 -2.39 -0.02 4.69 16 34 H 0.14 4.71 8.14 -2.39 -0.02 4.69 16 35 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 37 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.10 2.22 6.88 -2.39 -0.02 2.21 16 40 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.05 1.06 6.26 -2.39 -0.01 1.05 16 Total: -1.00 -73.75 334.85 0.04 -73.72 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 1.00 Total: 15.24 kcal Atomic # 6 Polarization: -52.88 SS G_CDS: 4.16 Total: -48.71 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -1.15 Total: -84.44 kcal Atomic # 8 Polarization: -89.82 SS G_CDS: -5.70 Total: -95.52 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 94.78 SS G_CDS: -0.31 Total: 94.47 kcal Total: -73.75 0.04 -73.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190585664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.127 kcal (2) G-P(sol) polarization free energy of solvation -73.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds