Wall clock time and date at job start Tue Mar 31 2020 06:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46788 * 2 1 4 4 C 1.38549 * 119.80733 * 269.97243 * 3 2 1 5 5 C 1.37790 * 120.30363 * 180.02562 * 4 3 2 6 6 C 1.39711 * 119.90635 * 0.02562 * 5 4 3 7 7 C 1.47529 * 120.19154 * 179.97438 * 6 5 4 8 8 O 1.21587 * 120.00029 * 150.51480 * 7 6 5 9 9 N 1.34777 * 119.99981 * 330.51553 * 7 6 5 10 10 C 1.47063 * 136.05795 * 4.59376 * 9 7 6 11 11 C 1.53241 * 88.08217 * 207.20215 * 10 9 7 12 12 O 1.42897 * 114.19825 * 87.72479 * 11 10 9 13 13 C 1.50699 * 114.32575 * 220.46957 * 11 10 9 14 14 H 1.08004 * 120.00427 * 93.75639 * 13 11 10 15 15 C 1.37881 * 120.00046 * 273.75905 * 13 11 10 16 16 N 1.31512 * 119.99973 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99946 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47346 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47090 * 119.99918 * 17 15 13 20 20 H 1.48493 * 109.47024 * 239.99603 * 17 15 13 21 21 C 1.47067 * 136.05425 * 184.96237 * 9 7 6 22 22 C 1.40149 * 119.61504 * 0.02562 * 6 5 4 23 23 O 1.35648 * 120.14521 * 180.02562 * 22 6 5 24 24 C 1.38058 * 119.80583 * 90.00353 * 3 2 1 25 25 H 1.09001 * 109.47114 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47308 * 299.99944 * 1 2 3 27 27 H 1.08997 * 109.46934 * 59.99838 * 1 2 3 28 28 H 1.08996 * 109.46845 * 240.00313 * 2 1 3 29 29 H 1.08997 * 109.46934 * 120.00162 * 2 1 3 30 30 H 1.07998 * 119.84896 * 0.03042 * 4 3 2 31 31 H 1.07994 * 120.04741 * 180.02562 * 5 4 3 32 32 H 1.09004 * 113.46840 * 321.92909 * 10 9 7 33 33 H 1.08990 * 113.47065 * 92.37256 * 10 9 7 34 34 H 0.96704 * 113.99982 * 86.30551 * 12 11 10 35 35 H 0.97001 * 120.00051 * 180.02562 * 16 15 13 36 36 H 1.09004 * 113.46789 * 267.62246 * 21 9 7 37 37 H 1.08995 * 113.47555 * 38.00271 * 21 9 7 38 38 H 0.96704 * 114.00035 * 269.97362 * 23 22 6 39 39 H 1.08002 * 119.95649 * 0.24760 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0700 -1.2022 5 6 2.7221 3.3689 -1.2141 6 6 2.9582 4.0353 -0.0091 7 6 3.4510 5.4259 -0.0146 8 8 3.1666 6.1752 0.8998 9 7 4.2163 5.8656 -1.0331 10 6 4.6917 5.3192 -2.3130 11 6 5.9027 6.2517 -2.2023 12 8 7.0026 5.6996 -1.4762 13 6 6.3105 6.8966 -3.5019 14 1 5.9331 7.8747 -3.7612 15 6 7.1653 6.2377 -4.3601 16 7 7.6251 5.0468 -4.0442 17 14 7.6712 7.0374 -5.9706 18 1 7.0215 8.3675 -6.0885 19 1 9.1468 7.2024 -5.9993 20 1 7.2473 6.1777 -7.1047 21 6 4.9489 7.1007 -1.3505 22 6 2.7252 3.3748 1.2048 23 8 2.9504 4.0118 2.3811 24 6 2.2611 2.0678 1.1980 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0805 1.5556 -2.1342 31 1 2.8996 3.8710 -2.1536 32 1 4.9537 4.2623 -2.2633 33 1 4.0391 5.5532 -3.1540 34 1 7.6016 5.1654 -2.0156 35 1 8.2268 4.5835 -4.6477 36 1 4.3654 7.8141 -1.9326 37 1 5.4281 7.5562 -0.4840 38 1 3.8486 3.9021 2.7222 39 1 2.0837 1.5537 2.1310 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193978339.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:35 Heat of formation + Delta-G solvation = -88.869124 kcal Electronic energy + Delta-G solvation = -23234.345053 eV Core-core repulsion = 19721.502343 eV Total energy + Delta-G solvation = -3512.842710 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.73352 -40.55397 -38.87191 -38.01146 -35.93367 -34.81748 -34.13551 -31.52527 -30.88926 -29.76686 -27.28454 -26.93469 -25.27705 -23.62341 -22.70208 -21.71401 -20.40647 -19.41114 -18.87682 -18.15477 -17.59148 -17.09617 -16.90800 -16.19309 -16.14777 -15.96490 -15.59554 -15.07081 -14.92304 -14.70476 -14.36058 -14.29196 -14.00818 -13.81031 -13.45729 -13.40548 -12.86843 -12.80590 -12.74317 -12.61747 -12.29259 -12.24071 -12.16310 -11.76242 -11.72942 -11.32669 -10.94910 -10.66044 -10.23756 -9.94552 -9.76477 -9.50908 -8.28460 -6.45625 -0.21867 0.22469 1.46178 1.51098 1.61328 1.72475 1.89698 2.40629 2.60478 2.93260 3.15143 3.39915 3.69050 3.78529 3.84535 4.09554 4.20472 4.25918 4.39439 4.43679 4.51095 4.56087 4.57914 4.70771 4.79980 4.81056 4.87693 4.99444 5.07369 5.11303 5.19593 5.24288 5.29076 5.41829 5.52756 5.72131 5.76414 5.89355 6.60548 6.69711 6.78969 7.09546 7.28527 7.47349 8.78212 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020277 B = 0.004264 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.541575 B = 6565.136650 C = 7443.373399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.038 4.038 4 C -0.132 4.132 5 C -0.074 4.074 6 C -0.185 4.185 7 C 0.570 3.430 8 O -0.583 6.583 9 N -0.633 5.633 10 C 0.087 3.913 11 C 0.222 3.778 12 O -0.586 6.586 13 C -0.553 4.553 14 H 0.075 0.925 15 C 0.035 3.965 16 N -0.917 5.917 17 Si 0.971 3.029 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.275 1.275 21 C 0.106 3.894 22 C 0.147 3.853 23 O -0.498 6.498 24 C -0.152 4.152 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.158 0.842 31 H 0.131 0.869 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.390 0.610 35 H 0.277 0.723 36 H 0.103 0.897 37 H 0.053 0.947 38 H 0.403 0.597 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.574 -12.345 2.608 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.038 4.038 4 C -0.150 4.150 5 C -0.092 4.092 6 C -0.189 4.189 7 C 0.362 3.638 8 O -0.465 6.465 9 N -0.365 5.365 10 C -0.036 4.036 11 C 0.180 3.820 12 O -0.399 6.399 13 C -0.591 4.591 14 H 0.093 0.907 15 C -0.166 4.166 16 N -0.557 5.557 17 Si 0.796 3.204 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.200 1.200 21 C -0.016 4.016 22 C 0.101 3.899 23 O -0.310 6.310 24 C -0.170 4.170 25 H 0.096 0.904 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.176 0.824 31 H 0.149 0.851 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.246 0.754 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.072 0.928 38 H 0.262 0.738 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.587 -11.688 3.639 16.184 hybrid contribution 1.288 0.445 -0.977 1.677 sum -9.298 -11.243 2.662 14.830 Atomic orbital electron populations 1.21755 0.93789 1.02863 1.01994 1.20696 0.96723 0.89917 1.04775 1.20350 0.94271 0.97540 0.91663 1.21307 1.00501 0.93630 0.99556 1.21520 0.95915 0.95490 0.96324 1.20346 1.08556 0.94119 0.95849 1.18188 0.77016 0.87852 0.80724 1.90714 1.59630 1.58506 1.37664 1.49672 1.48018 1.19355 1.19465 1.24025 0.96444 1.00104 0.83024 1.19749 0.83417 0.89758 0.89049 1.86029 1.40432 1.71701 1.41781 1.21676 1.30019 1.04920 1.02464 0.90734 1.25753 0.94440 0.94806 1.01604 1.69325 1.33342 1.13928 1.39141 0.85297 0.77797 0.78759 0.78513 1.19181 1.20789 1.20030 1.23375 0.91370 0.89062 0.97818 1.18698 0.96604 0.90724 0.83908 1.84731 1.36701 1.74675 1.34891 1.21449 1.03016 0.92295 1.00233 0.90414 0.93095 0.92772 0.89036 0.89287 0.82433 0.85083 0.91700 0.88549 0.75426 0.91264 0.87906 0.92828 0.73781 0.82591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.89 71.98 0.71 -1.10 16 2 C -0.08 -1.12 6.05 29.85 0.18 -0.94 16 3 C -0.04 -0.79 5.14 -19.83 -0.10 -0.89 16 4 C -0.13 -3.10 9.67 22.24 0.22 -2.88 16 5 C -0.07 -2.28 8.69 22.52 0.20 -2.09 16 6 C -0.19 -6.85 5.83 -20.01 -0.12 -6.96 16 7 C 0.57 25.56 7.70 86.69 0.67 26.23 16 8 O -0.58 -29.66 16.51 14.46 0.24 -29.42 16 9 N -0.63 -27.97 3.68 -863.08 -3.18 -31.15 16 10 C 0.09 3.69 5.65 83.10 0.47 4.16 16 11 C 0.22 10.67 1.57 -11.29 -0.02 10.65 16 12 O -0.59 -30.76 13.54 -148.98 -2.02 -32.78 16 13 C -0.55 -27.21 8.69 25.60 0.22 -26.99 16 14 H 0.07 3.56 7.81 -2.91 -0.02 3.54 16 15 C 0.03 1.66 5.39 84.66 0.46 2.12 16 16 N -0.92 -45.26 11.01 21.45 0.24 -45.02 16 17 Si 0.97 38.46 29.54 68.60 2.03 40.49 16 18 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 19 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 20 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 21 C 0.11 4.79 8.04 83.18 0.67 5.46 16 22 C 0.15 4.77 6.69 22.84 0.15 4.92 16 23 O -0.50 -16.57 11.99 -71.18 -0.85 -17.42 16 24 C -0.15 -3.68 9.62 22.34 0.21 -3.46 16 25 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.09 1.00 8.08 -2.39 -0.02 0.98 16 29 H 0.09 0.97 8.08 -2.39 -0.02 0.95 16 30 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 31 H 0.13 4.06 5.84 -2.91 -0.02 4.04 16 32 H 0.06 2.77 7.36 -2.38 -0.02 2.75 16 33 H 0.10 3.79 8.09 -2.39 -0.02 3.77 16 34 H 0.39 20.58 6.32 -74.05 -0.47 20.11 16 35 H 0.28 12.87 8.31 -92.71 -0.77 12.10 16 36 H 0.10 4.20 8.10 -2.38 -0.02 4.18 16 37 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.40 10.24 9.06 -74.05 -0.67 9.57 16 39 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -65.35 331.94 0.33 -65.02 By element: Atomic # 1 Polarization: 42.10 SS G_CDS: -0.05 Total: 42.05 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 3.92 Total: 8.23 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -2.94 Total: -76.17 kcal Atomic # 8 Polarization: -76.99 SS G_CDS: -2.63 Total: -79.62 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -65.35 0.33 -65.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193978339.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.848 kcal (2) G-P(sol) polarization free energy of solvation -65.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds