Wall clock time and date at job start Tue Mar 31 2020 06:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38005 * 119.95569 * 2 1 4 4 C 1.39295 * 119.91091 * 180.02562 * 3 2 1 5 5 C 1.48443 * 120.09199 * 179.97438 * 4 3 2 6 6 N 1.34051 * 126.67588 * 359.68995 * 5 4 3 7 7 N 1.28995 * 107.26800 * 179.83567 * 6 5 4 8 8 N 1.28725 * 108.94056 * 0.43283 * 7 6 5 9 9 C 1.46505 * 125.33912 * 179.72462 * 8 7 6 10 10 N 1.46495 * 109.47360 * 270.00143 * 9 8 7 11 11 C 1.46502 * 119.99899 * 269.99774 * 10 9 8 12 12 C 1.36926 * 120.00228 * 89.99589 * 10 9 8 13 13 H 1.08004 * 120.00738 * 20.36674 * 12 10 9 14 14 C 1.38823 * 120.00168 * 200.36541 * 12 10 9 15 15 N 1.31611 * 119.99426 * 14.98972 * 14 12 10 16 16 Si 1.86798 * 119.99991 * 194.98495 * 14 12 10 17 17 H 1.48501 * 109.46782 * 85.00280 * 16 14 12 18 18 H 1.48504 * 109.47148 * 205.00145 * 16 14 12 19 19 H 1.48503 * 109.47528 * 325.00551 * 16 14 12 20 20 N 1.28868 * 109.32498 * 359.72410 * 8 7 6 21 21 C 1.39333 * 119.81511 * 0.02562 * 4 3 2 22 22 C 1.37961 * 119.90750 * 0.02833 * 21 4 3 23 23 C 1.38524 * 119.95737 * 180.02562 * 2 1 3 24 24 F 1.35102 * 119.90269 * 359.71441 * 23 2 1 25 25 H 1.09000 * 109.46402 * 269.97063 * 1 2 3 26 26 H 1.08996 * 109.47123 * 29.96926 * 1 2 3 27 27 H 1.09000 * 109.46795 * 149.97430 * 1 2 3 28 28 H 1.08002 * 120.04599 * 0.03011 * 3 2 1 29 29 H 1.09002 * 109.46499 * 29.99931 * 9 8 7 30 30 H 1.08994 * 109.47321 * 149.99396 * 9 8 7 31 31 H 1.09001 * 109.47302 * 95.09299 * 11 10 9 32 32 H 1.08996 * 109.47207 * 215.09784 * 11 10 9 33 33 H 1.09006 * 109.46767 * 335.09629 * 11 10 9 34 34 H 0.97007 * 119.99636 * 179.97438 * 15 14 12 35 35 H 1.08001 * 120.04806 * 179.97438 * 21 4 3 36 36 H 1.08002 * 119.95590 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1957 0.0000 4 6 3.5891 1.1946 -0.0005 5 6 4.3343 2.4784 -0.0011 6 7 3.8065 3.7106 -0.0070 7 7 4.7881 4.5476 -0.0017 8 7 5.8960 3.8923 -0.0021 9 6 7.2338 4.4895 -0.0027 10 7 7.6792 4.6884 -1.3841 11 6 8.4191 3.6293 -2.0748 12 6 7.4038 5.8641 -2.0297 13 1 7.1659 6.7503 -1.4601 14 6 7.4305 5.9171 -3.4167 15 7 7.4252 4.8034 -4.1179 16 14 7.4739 7.5691 -4.2875 17 1 8.8787 8.0408 -4.3844 18 1 6.9050 7.4247 -5.6517 19 1 6.6727 8.5552 -3.5188 20 7 5.6440 2.6285 -0.0017 21 6 4.2809 -0.0148 -0.0016 22 6 3.5844 -1.2057 -0.0027 23 6 2.1987 -1.2002 -0.0005 24 9 1.5204 -2.3685 0.0048 25 1 -0.3632 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5133 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6561 2.1310 0.0005 29 1 7.2029 5.4504 0.5109 30 1 7.9286 3.8252 0.5110 31 1 7.7267 3.0255 -2.6614 32 1 9.1613 4.0765 -2.7360 33 1 8.9198 2.9979 -1.3408 34 1 7.4435 4.8404 -5.0871 35 1 5.3609 -0.0201 -0.0025 36 1 4.1198 -2.1437 -0.0040 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194614506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:40 Heat of formation + Delta-G solvation = 124.643264 kcal Electronic energy + Delta-G solvation = -22291.677015 eV Core-core repulsion = 18729.218095 eV Total energy + Delta-G solvation = -3562.458920 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.94773 -43.26725 -39.07373 -36.29736 -33.69565 -33.22866 -32.22987 -31.48420 -29.97701 -27.06095 -26.85260 -26.21467 -23.88519 -23.05949 -22.20094 -21.04333 -20.65468 -17.58062 -17.35720 -16.98969 -16.40282 -16.30721 -15.72143 -15.62530 -14.83571 -14.19192 -13.86519 -13.73583 -13.49535 -13.36341 -13.33331 -13.03558 -12.74389 -12.38979 -12.17067 -12.03106 -11.71946 -11.29810 -11.23502 -11.03933 -10.92441 -10.76337 -10.38923 -10.34944 -10.15798 -10.08445 -9.89705 -9.00601 -8.93272 -8.22384 -7.54643 -6.20429 -3.70006 0.85762 1.21178 2.21339 2.87666 2.92470 3.23592 3.26077 3.28098 3.80767 4.15437 4.19299 4.26073 4.59678 4.70009 4.97352 5.02764 5.08755 5.16292 5.27940 5.46595 5.48826 5.63739 5.71845 5.81428 5.89717 6.01839 6.10568 6.15899 6.35625 6.41807 6.53877 6.65915 6.83849 6.93115 7.17588 7.36564 7.45708 7.83759 8.68784 9.26353 9.27136 9.69465 10.81974 Molecular weight = 291.12amu Principal moments of inertia in cm(-1) A = 0.024497 B = 0.003547 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.717837 B = 7892.704291 C = 7998.191463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.122 4.122 3 C -0.060 4.060 4 C 0.008 3.992 5 C 0.168 3.832 6 N -0.304 5.304 7 N -0.064 5.064 8 N -0.117 5.117 9 C 0.327 3.673 10 N -0.543 5.543 11 C 0.146 3.854 12 C -0.288 4.288 13 H 0.087 0.913 14 C 0.020 3.980 15 N -0.885 5.885 16 Si 0.920 3.080 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.272 1.272 20 N -0.307 5.307 21 C -0.065 4.065 22 C -0.151 4.151 23 C 0.097 3.903 24 F -0.140 7.140 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.144 0.856 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.015 0.985 34 H 0.263 0.737 35 H 0.142 0.858 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.852 -9.364 8.345 13.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.123 4.123 3 C -0.080 4.080 4 C 0.004 3.996 5 C -0.111 4.111 6 N -0.174 5.174 7 N -0.056 5.056 8 N -0.043 5.043 9 C 0.120 3.880 10 N -0.259 5.259 11 C 0.002 3.998 12 C -0.418 4.418 13 H 0.105 0.895 14 C -0.183 4.183 15 N -0.525 5.525 16 Si 0.748 3.252 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 N -0.160 5.160 21 C -0.085 4.085 22 C -0.170 4.170 23 C 0.077 3.923 24 F -0.119 7.119 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.162 0.838 29 H 0.124 0.876 30 H 0.115 0.885 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.574 -8.661 8.081 13.092 hybrid contribution -0.152 0.020 -0.802 0.816 sum -5.726 -8.642 7.280 12.667 Atomic orbital electron populations 1.20710 0.89933 1.03406 1.02786 1.19799 0.97110 0.91458 1.03951 1.20966 0.92548 0.97809 0.96663 1.17353 0.91889 0.88170 1.02152 1.23350 0.87592 0.93748 1.06437 1.75820 1.23772 0.98245 1.19598 1.78744 0.89302 1.22884 1.14707 1.54470 1.11235 1.00140 1.38456 1.23125 0.77012 0.97654 0.90176 1.45207 1.54187 1.15613 1.10914 1.21145 0.95144 0.89517 0.93978 1.19485 1.46289 0.86513 0.89494 0.89537 1.25266 0.98144 0.98068 0.96793 1.70107 1.49753 1.26024 1.06584 0.86030 0.78228 0.82163 0.78757 1.20611 1.21242 1.19708 1.74681 1.16596 1.03825 1.20915 1.21053 1.00944 0.90008 0.96521 1.21001 0.91983 0.99559 1.04411 1.17625 0.89993 0.80842 1.03810 1.91463 1.80269 1.46234 1.93922 0.90821 0.90695 0.91258 0.83848 0.87615 0.88502 0.94069 0.92194 0.96654 0.92674 0.83993 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.83 36.01 0.35 -0.73 16 2 C -0.12 -1.52 5.88 -104.60 -0.62 -2.14 16 3 C -0.06 -0.85 9.35 -39.27 -0.37 -1.22 16 4 C 0.01 0.13 5.88 -104.89 -0.62 -0.49 16 5 C 0.17 3.34 7.94 -156.30 -1.24 2.09 16 6 N -0.30 -6.53 12.23 32.15 0.39 -6.14 16 7 N -0.06 -1.43 13.23 60.35 0.80 -0.63 16 8 N -0.12 -2.48 4.23 -13.46 -0.06 -2.54 16 9 C 0.33 6.25 7.16 -63.75 -0.46 5.79 16 10 N -0.54 -12.52 3.17 -184.86 -0.59 -13.10 16 11 C 0.15 3.29 9.02 59.85 0.54 3.83 16 12 C -0.29 -7.31 9.68 -15.06 -0.15 -7.45 16 13 H 0.09 2.13 7.86 -52.48 -0.41 1.72 16 14 C 0.02 0.53 5.06 -17.43 -0.09 0.44 16 15 N -0.88 -24.27 10.67 55.49 0.59 -23.68 16 16 Si 0.92 20.53 29.58 -169.99 -5.03 15.50 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 N -0.31 -6.30 11.85 32.17 0.38 -5.92 16 21 C -0.07 -0.91 9.70 -39.28 -0.38 -1.29 16 22 C -0.15 -1.83 10.01 -39.56 -0.40 -2.23 16 23 C 0.10 1.22 7.24 -39.36 -0.29 0.94 16 24 F -0.14 -1.73 16.46 2.25 0.04 -1.69 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 27 H 0.07 0.63 7.63 -51.93 -0.40 0.24 16 28 H 0.14 1.98 7.88 -52.49 -0.41 1.57 16 29 H 0.11 1.82 8.03 -51.93 -0.42 1.41 16 30 H 0.10 1.55 7.86 -51.93 -0.41 1.14 16 31 H 0.04 1.05 7.40 -51.93 -0.38 0.66 16 32 H 0.06 1.42 7.21 -51.93 -0.37 1.04 16 33 H 0.01 0.29 7.84 -51.93 -0.41 -0.12 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.14 1.92 7.88 -52.49 -0.41 1.50 16 36 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 321.68 15.07 4.85 4.85 Total: -1.00 -29.71 321.68 -6.35 -36.06 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.03 Total: -0.26 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -3.70 Total: -2.44 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 1.52 Total: -52.02 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.71 -6.35 -36.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194614506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.702 kcal (2) G-P(sol) polarization free energy of solvation -29.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds