Wall clock time and date at job start Tue Mar 31 2020 06:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38005 * 119.95569 * 2 1 4 4 C 1.39295 * 119.91091 * 180.02562 * 3 2 1 5 5 C 1.48443 * 120.09199 * 179.97438 * 4 3 2 6 6 N 1.34051 * 126.67588 * 359.68995 * 5 4 3 7 7 N 1.28995 * 107.26800 * 179.83567 * 6 5 4 8 8 N 1.28725 * 108.94056 * 0.43283 * 7 6 5 9 9 C 1.46505 * 125.33912 * 179.72462 * 8 7 6 10 10 N 1.46495 * 109.47360 * 270.00143 * 9 8 7 11 11 C 1.46502 * 119.99899 * 269.99774 * 10 9 8 12 12 C 1.36926 * 120.00228 * 89.99589 * 10 9 8 13 13 H 1.08004 * 120.00738 * 20.36674 * 12 10 9 14 14 C 1.38823 * 120.00168 * 200.36541 * 12 10 9 15 15 N 1.31611 * 119.99426 * 14.98972 * 14 12 10 16 16 Si 1.86798 * 119.99991 * 194.98495 * 14 12 10 17 17 H 1.48501 * 109.46782 * 85.00280 * 16 14 12 18 18 H 1.48504 * 109.47148 * 205.00145 * 16 14 12 19 19 H 1.48503 * 109.47528 * 325.00551 * 16 14 12 20 20 N 1.28868 * 109.32498 * 359.72410 * 8 7 6 21 21 C 1.39333 * 119.81511 * 0.02562 * 4 3 2 22 22 C 1.37961 * 119.90750 * 0.02833 * 21 4 3 23 23 C 1.38524 * 119.95737 * 180.02562 * 2 1 3 24 24 F 1.35102 * 119.90269 * 359.71441 * 23 2 1 25 25 H 1.09000 * 109.46402 * 269.97063 * 1 2 3 26 26 H 1.08996 * 109.47123 * 29.96926 * 1 2 3 27 27 H 1.09000 * 109.46795 * 149.97430 * 1 2 3 28 28 H 1.08002 * 120.04599 * 0.03011 * 3 2 1 29 29 H 1.09002 * 109.46499 * 29.99931 * 9 8 7 30 30 H 1.08994 * 109.47321 * 149.99396 * 9 8 7 31 31 H 1.09001 * 109.47302 * 95.09299 * 11 10 9 32 32 H 1.08996 * 109.47207 * 215.09784 * 11 10 9 33 33 H 1.09006 * 109.46767 * 335.09629 * 11 10 9 34 34 H 0.97007 * 119.99636 * 179.97438 * 15 14 12 35 35 H 1.08001 * 120.04806 * 179.97438 * 21 4 3 36 36 H 1.08002 * 119.95590 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1957 0.0000 4 6 3.5891 1.1946 -0.0005 5 6 4.3343 2.4784 -0.0011 6 7 3.8065 3.7106 -0.0070 7 7 4.7881 4.5476 -0.0017 8 7 5.8960 3.8923 -0.0021 9 6 7.2338 4.4895 -0.0027 10 7 7.6792 4.6884 -1.3841 11 6 8.4191 3.6293 -2.0748 12 6 7.4038 5.8641 -2.0297 13 1 7.1659 6.7503 -1.4601 14 6 7.4305 5.9171 -3.4167 15 7 7.4252 4.8034 -4.1179 16 14 7.4739 7.5691 -4.2875 17 1 8.8787 8.0408 -4.3844 18 1 6.9050 7.4247 -5.6517 19 1 6.6727 8.5552 -3.5188 20 7 5.6440 2.6285 -0.0017 21 6 4.2809 -0.0148 -0.0016 22 6 3.5844 -1.2057 -0.0027 23 6 2.1987 -1.2002 -0.0005 24 9 1.5204 -2.3685 0.0048 25 1 -0.3632 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5133 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6561 2.1310 0.0005 29 1 7.2029 5.4504 0.5109 30 1 7.9286 3.8252 0.5110 31 1 7.7267 3.0255 -2.6614 32 1 9.1613 4.0765 -2.7360 33 1 8.9198 2.9979 -1.3408 34 1 7.4435 4.8404 -5.0871 35 1 5.3609 -0.0201 -0.0025 36 1 4.1198 -2.1437 -0.0040 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194614506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:39 Heat of formation + Delta-G solvation = 108.158261 kcal Electronic energy + Delta-G solvation = -22292.391859 eV Core-core repulsion = 18729.218095 eV Total energy + Delta-G solvation = -3563.173764 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.119 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.94667 -44.92004 -40.15197 -38.03184 -35.31466 -34.54985 -33.52883 -33.21165 -31.31756 -28.50126 -28.09784 -27.96366 -25.24873 -24.70904 -23.49109 -22.63741 -21.92610 -19.19918 -18.68032 -18.45346 -18.01429 -17.46742 -17.04777 -16.70979 -16.53208 -15.61332 -15.45990 -15.27030 -14.76057 -14.43799 -14.31755 -14.30506 -14.11330 -13.87887 -13.43795 -13.26913 -13.01420 -12.96176 -12.78262 -12.64973 -12.44756 -12.24673 -12.10108 -12.09053 -11.78030 -11.74544 -11.37291 -10.90466 -9.95356 -9.45979 -9.39615 -8.11970 -5.65842 -0.31440 0.18559 0.53546 1.32267 1.44032 1.45105 1.52583 1.53343 2.35119 2.62082 2.84787 3.15313 3.18063 3.29020 3.39139 3.75244 3.78211 4.05262 4.16107 4.29521 4.40048 4.47933 4.65364 4.70014 4.77535 4.81654 4.91033 4.98294 5.07743 5.11329 5.19051 5.28242 5.40688 5.42173 5.52299 5.61009 5.80563 5.99244 6.80074 7.42833 7.59863 7.82716 8.89656 Molecular weight = 291.12amu Principal moments of inertia in cm(-1) A = 0.024497 B = 0.003547 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.717837 B = 7892.704291 C = 7998.191463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.119 4.119 3 C -0.063 4.063 4 C -0.024 4.024 5 C 0.175 3.825 6 N -0.318 5.318 7 N -0.085 5.085 8 N -0.120 5.120 9 C 0.328 3.672 10 N -0.564 5.564 11 C 0.163 3.837 12 C -0.294 4.294 13 H 0.090 0.910 14 C -0.033 4.033 15 N -0.923 5.923 16 Si 0.979 3.021 17 H -0.271 1.271 18 H -0.297 1.297 19 H -0.267 1.267 20 N -0.313 5.313 21 C -0.066 4.066 22 C -0.141 4.141 23 C 0.100 3.900 24 F -0.135 7.135 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.142 0.858 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.002 0.998 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.256 0.744 35 H 0.144 0.856 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.506 -10.476 9.652 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.120 4.120 3 C -0.083 4.083 4 C -0.027 4.027 5 C -0.105 4.105 6 N -0.188 5.188 7 N -0.078 5.078 8 N -0.045 5.045 9 C 0.123 3.877 10 N -0.282 5.282 11 C 0.019 3.981 12 C -0.423 4.423 13 H 0.108 0.892 14 C -0.231 4.231 15 N -0.566 5.566 16 Si 0.805 3.195 17 H -0.197 1.197 18 H -0.223 1.223 19 H -0.192 1.192 20 N -0.166 5.166 21 C -0.086 4.086 22 C -0.160 4.160 23 C 0.080 3.920 24 F -0.114 7.114 25 H 0.107 0.893 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.160 0.840 29 H 0.143 0.857 30 H 0.152 0.848 31 H 0.021 0.979 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.162 0.838 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.238 -9.765 9.426 14.937 hybrid contribution -0.086 0.183 -1.032 1.052 sum -6.323 -9.581 8.394 14.221 Atomic orbital electron populations 1.20806 0.87857 1.04224 1.04005 1.20044 0.98607 0.90721 1.02629 1.20987 0.91863 0.98592 0.96834 1.17514 0.92669 0.87334 1.05227 1.23981 0.87493 0.94564 1.04475 1.75788 1.23740 0.98975 1.20333 1.78700 0.89825 1.23563 1.15680 1.53961 1.11371 1.00486 1.38723 1.23310 0.76128 0.99689 0.88539 1.45205 1.55796 1.15357 1.11824 1.20868 0.93831 0.89170 0.94276 1.19761 1.45065 0.87735 0.89781 0.89203 1.25993 0.98752 1.00757 0.97630 1.70265 1.52463 1.27678 1.06148 0.85128 0.78435 0.78888 0.77067 1.19699 1.22318 1.19152 1.74661 1.17109 1.03167 1.21625 1.21102 1.01160 0.89879 0.96450 1.21241 0.91958 0.99964 1.02811 1.17757 0.90288 0.81001 1.02986 1.91483 1.80188 1.45919 1.93765 0.89312 0.89911 0.90457 0.84002 0.85701 0.84843 0.97906 0.94230 0.92940 0.93449 0.83775 0.81479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 9.83 71.24 0.70 -1.18 16 2 C -0.12 -2.71 5.88 -19.85 -0.12 -2.83 16 3 C -0.06 -1.71 9.35 22.47 0.21 -1.50 16 4 C -0.02 -0.76 5.88 -20.04 -0.12 -0.88 16 5 C 0.17 6.86 7.94 137.37 1.09 7.95 16 6 N -0.32 -13.67 12.23 -52.19 -0.64 -14.30 16 7 N -0.08 -3.80 13.23 37.02 0.49 -3.31 16 8 N -0.12 -5.00 4.23 -196.49 -0.83 -5.84 16 9 C 0.33 12.05 7.16 170.96 1.22 13.27 16 10 N -0.56 -25.79 3.17 -738.76 -2.34 -28.13 16 11 C 0.16 7.37 9.02 127.77 1.15 8.52 16 12 C -0.29 -14.92 9.68 84.04 0.81 -14.11 16 13 H 0.09 4.39 7.86 -2.91 -0.02 4.36 16 14 C -0.03 -1.74 5.06 84.87 0.43 -1.31 16 15 N -0.92 -52.25 10.67 21.65 0.23 -52.02 16 16 Si 0.98 42.79 29.58 68.60 2.03 44.82 16 17 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 18 H -0.30 -13.31 7.11 99.48 0.71 -12.61 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 20 N -0.31 -12.63 11.85 -52.14 -0.62 -13.25 16 21 C -0.07 -1.74 9.70 22.47 0.22 -1.52 16 22 C -0.14 -3.05 10.01 22.28 0.22 -2.83 16 23 C 0.10 2.24 7.24 22.42 0.16 2.40 16 24 F -0.14 -2.90 16.46 44.97 0.74 -2.16 16 25 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 27 H 0.08 1.19 7.63 -2.39 -0.02 1.17 16 28 H 0.14 3.85 7.88 -2.91 -0.02 3.83 16 29 H 0.13 4.07 8.03 -2.39 -0.02 4.05 16 30 H 0.13 3.89 7.86 -2.39 -0.02 3.87 16 31 H 0.00 0.13 7.40 -2.39 -0.02 0.11 16 32 H 0.04 1.91 7.21 -2.39 -0.02 1.89 16 33 H 0.05 1.92 7.84 -2.38 -0.02 1.90 16 34 H 0.26 14.13 8.31 -92.70 -0.77 13.36 16 35 H 0.14 3.70 7.88 -2.91 -0.02 3.67 16 36 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -64.88 321.68 6.16 -58.72 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 1.11 Total: 9.47 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 5.99 Total: 6.00 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -3.71 Total: -116.84 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.74 Total: -2.16 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -64.88 6.16 -58.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194614506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.876 kcal (2) G-P(sol) polarization free energy of solvation -64.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds