Wall clock time and date at job start Tue Mar 31 2020 07:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47219 * 2 1 4 4 H 1.08995 * 109.55136 * 54.87558 * 3 2 1 5 5 C 1.53305 * 109.50888 * 175.00185 * 3 2 1 6 6 N 1.47152 * 108.37883 * 172.22497 * 5 3 2 7 7 S 1.65606 * 120.97836 * 129.44327 * 6 5 3 8 8 O 1.42094 * 104.27817 * 333.92620 * 7 6 5 9 9 O 1.42106 * 104.27580 * 206.06852 * 7 6 5 10 10 C 1.81396 * 104.45103 * 89.99836 * 7 6 5 11 11 C 1.52997 * 109.47360 * 179.97438 * 10 7 6 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47432 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46890 * 120.00210 * 16 14 12 19 19 H 1.48501 * 109.47062 * 240.00257 * 16 14 12 20 20 C 1.47153 * 118.04149 * 309.71333 * 6 5 3 21 21 C 1.52881 * 108.60269 * 50.22966 * 20 6 5 22 22 H 1.08997 * 109.41202 * 67.84670 * 21 20 6 23 23 C 1.53001 * 109.58165 * 187.92552 * 21 20 6 24 24 O 1.42955 * 109.51190 * 294.74332 * 3 2 1 25 25 H 1.09000 * 109.47130 * 300.00269 * 1 2 3 26 26 H 1.08997 * 109.47164 * 59.99838 * 1 2 3 27 27 H 1.08994 * 109.47271 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47082 * 240.00173 * 2 1 3 29 29 H 1.08997 * 109.47164 * 120.00162 * 2 1 3 30 30 H 1.08995 * 109.67956 * 52.50629 * 5 3 2 31 31 H 1.08996 * 109.67922 * 291.94920 * 5 3 2 32 32 H 1.09002 * 109.47134 * 59.99751 * 10 7 6 33 33 H 1.08998 * 109.46953 * 300.00489 * 10 7 6 34 34 H 1.09002 * 109.47153 * 59.99820 * 11 10 7 35 35 H 1.09001 * 109.46832 * 300.00011 * 11 10 7 36 36 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.68086 * 170.00817 * 20 6 5 38 38 H 1.08999 * 109.67968 * 290.56772 * 20 6 5 39 39 H 1.08996 * 109.47472 * 179.88240 * 23 21 20 40 40 H 1.09003 * 109.47161 * 299.88303 * 23 21 20 41 41 H 1.09002 * 109.47140 * 59.87927 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9834 0.8401 5 6 3.5679 1.4453 0.1259 6 7 4.0465 2.8237 -0.0645 7 16 5.0845 3.5230 1.0201 8 8 4.8286 2.8408 2.2400 9 8 4.8365 4.9166 0.8940 10 6 6.7370 3.1115 0.3951 11 6 7.7966 3.7097 1.3226 12 6 9.1694 3.3673 0.8037 13 1 9.2755 2.7820 -0.0977 14 6 10.2899 3.8022 1.4792 15 7 10.1607 4.5154 2.5766 16 14 11.9915 3.3784 0.8356 17 1 11.8650 2.5733 -0.4058 18 1 12.7347 4.6297 0.5399 19 1 12.7277 2.5958 1.8607 20 6 3.5710 3.5645 -1.2436 21 6 2.0473 3.4565 -1.3056 22 1 1.6110 4.0050 -0.4708 23 6 1.5445 4.0479 -2.6241 24 8 1.6674 2.0807 -1.2237 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 4.0002 0.7979 -0.6370 31 1 3.8553 1.0902 1.1155 32 1 6.8588 3.5217 -0.6074 33 1 6.8531 2.0283 0.3609 34 1 7.6749 3.2999 2.3253 35 1 7.6802 4.7929 1.3562 36 1 10.9491 4.8210 3.0520 37 1 3.8606 4.6120 -1.1604 38 1 4.0037 3.1340 -2.1467 39 1 0.4583 3.9681 -2.6674 40 1 1.8345 5.0968 -2.6859 41 1 1.9826 3.5001 -3.4585 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247468553.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:29 Heat of formation + Delta-G solvation = -134.383120 kcal Electronic energy + Delta-G solvation = -22339.057704 eV Core-core repulsion = 18959.685310 eV Total energy + Delta-G solvation = -3379.372393 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.69013 -36.75270 -35.54429 -34.94283 -34.60587 -33.91672 -31.59851 -31.18691 -28.39680 -26.05950 -25.55220 -23.64990 -21.71792 -21.47720 -20.93649 -18.55357 -17.67103 -16.95914 -16.60686 -16.11317 -15.64722 -15.27084 -14.81729 -14.71047 -14.55979 -14.22909 -13.85512 -13.44741 -13.27382 -12.66695 -12.55785 -12.45421 -12.29516 -12.10013 -11.87375 -11.78817 -11.65582 -11.49093 -11.31746 -11.16996 -11.11582 -11.08209 -10.99008 -10.50197 -10.42116 -10.38938 -10.17593 -9.76939 -9.29715 -8.67096 -8.53111 -6.14905 -4.20583 0.67530 2.90358 3.23754 3.31057 3.34575 3.48931 4.23475 4.35112 4.35922 4.64184 4.66237 4.76787 4.85184 4.92975 5.04929 5.13463 5.20358 5.24305 5.27535 5.42355 5.51525 5.55082 5.58123 5.61212 5.68849 5.73956 5.77125 5.80545 5.89593 6.00677 6.09329 6.14570 6.45158 6.51742 7.10476 7.26639 7.32371 7.78311 8.14747 8.83057 9.44402 10.96154 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.026278 B = 0.003832 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.255409 B = 7305.322081 C = 7562.310549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.082 3.918 4 H 0.063 0.937 5 C 0.088 3.912 6 N -1.010 6.010 7 S 2.588 3.412 8 O -0.963 6.963 9 O -0.963 6.963 10 C -0.586 4.586 11 C 0.027 3.973 12 C -0.520 4.520 13 H 0.062 0.938 14 C 0.057 3.943 15 N -0.890 5.890 16 Si 0.900 3.100 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.088 3.912 21 C 0.077 3.923 22 H 0.062 0.938 23 C -0.143 4.143 24 O -0.372 6.372 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.265 0.735 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.861 -6.288 -8.870 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.022 3.978 4 H 0.081 0.919 5 C -0.038 4.038 6 N -0.846 5.846 7 S 2.688 3.312 8 O -0.953 6.953 9 O -0.953 6.953 10 C -0.720 4.720 11 C -0.012 4.012 12 C -0.560 4.560 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.528 5.528 16 Si 0.728 3.272 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.038 4.038 21 C 0.018 3.982 22 H 0.080 0.920 23 C -0.200 4.200 24 O -0.292 6.292 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.152 -5.787 -8.106 20.704 hybrid contribution 1.585 -0.348 -0.534 1.709 sum -16.566 -6.135 -8.640 19.665 Atomic orbital electron populations 1.21696 0.95106 1.01473 1.02281 1.21525 0.96863 0.93837 1.03119 1.22457 0.93380 0.94456 0.87483 0.91856 1.22135 0.95208 0.82766 1.03696 1.58086 1.62662 1.23385 1.40484 1.05784 0.77188 0.74128 0.74092 1.93525 1.84416 1.75302 1.42076 1.93526 1.84560 1.31105 1.86138 1.30472 1.18726 1.10877 1.11932 1.18981 0.92290 0.96565 0.93334 1.21038 0.89629 1.34624 1.10665 0.91979 1.25075 0.99687 0.94869 0.94881 1.69964 1.30064 1.35878 1.16919 0.86405 0.83647 0.78273 0.78913 1.19632 1.20769 1.20758 1.22065 0.95277 0.98110 0.88323 1.22308 0.93593 0.83197 0.99088 0.91958 1.21732 1.01972 1.00727 0.95599 1.87901 1.79757 1.23595 1.37926 0.92912 0.91989 0.92739 0.90826 0.90142 0.90696 0.87829 0.86233 0.86234 0.94848 0.94847 0.92556 0.87824 0.90727 0.91622 0.90638 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.81 37.16 0.36 -0.86 16 2 C -0.12 -1.03 5.64 -26.73 -0.15 -1.18 16 3 C 0.08 0.92 2.78 -26.57 -0.07 0.85 16 4 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 5 C 0.09 1.08 5.96 -3.53 -0.02 1.05 16 6 N -1.01 -14.29 3.28 -113.30 -0.37 -14.66 16 7 S 2.59 47.04 5.47 -107.50 -0.59 46.45 16 8 O -0.96 -19.82 16.62 -57.54 -0.96 -20.77 16 9 O -0.96 -19.81 16.61 -57.54 -0.96 -20.77 16 10 C -0.59 -11.31 6.12 37.16 0.23 -11.08 16 11 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 12 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 16 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.09 1.07 5.94 -3.75 -0.02 1.05 16 21 C 0.08 0.87 3.39 -26.79 -0.09 0.78 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 C -0.14 -1.21 9.57 37.16 0.36 -0.85 16 24 O -0.37 -4.39 9.58 -35.23 -0.34 -4.73 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.55 7.83 -51.93 -0.41 0.15 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 1.29 6.88 -51.93 -0.36 0.93 16 32 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 33 H 0.12 2.08 8.14 -51.93 -0.42 1.66 16 34 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.10 1.28 6.87 -51.93 -0.36 0.93 16 38 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 344.20 15.07 5.19 5.19 Total: -1.00 -33.93 344.20 -9.27 -43.20 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -7.00 Total: -1.48 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 0.04 Total: -22.87 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.36 Total: -40.37 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -2.25 Total: -46.27 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 47.04 SS G_CDS: -0.59 Total: 46.45 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.93 -9.27 -43.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247468553.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.179 kcal (2) G-P(sol) polarization free energy of solvation -33.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds