Wall clock time and date at job start Tue Mar 31 2020 07:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47219 * 2 1 4 4 H 1.08995 * 109.55136 * 54.87558 * 3 2 1 5 5 C 1.53305 * 109.50888 * 175.00185 * 3 2 1 6 6 N 1.47152 * 108.37883 * 172.22497 * 5 3 2 7 7 S 1.65606 * 120.97836 * 129.44327 * 6 5 3 8 8 O 1.42094 * 104.27817 * 333.92620 * 7 6 5 9 9 O 1.42106 * 104.27580 * 206.06852 * 7 6 5 10 10 C 1.81396 * 104.45103 * 89.99836 * 7 6 5 11 11 C 1.52997 * 109.47360 * 179.97438 * 10 7 6 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47432 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46890 * 120.00210 * 16 14 12 19 19 H 1.48501 * 109.47062 * 240.00257 * 16 14 12 20 20 C 1.47153 * 118.04149 * 309.71333 * 6 5 3 21 21 C 1.52881 * 108.60269 * 50.22966 * 20 6 5 22 22 H 1.08997 * 109.41202 * 67.84670 * 21 20 6 23 23 C 1.53001 * 109.58165 * 187.92552 * 21 20 6 24 24 O 1.42955 * 109.51190 * 294.74332 * 3 2 1 25 25 H 1.09000 * 109.47130 * 300.00269 * 1 2 3 26 26 H 1.08997 * 109.47164 * 59.99838 * 1 2 3 27 27 H 1.08994 * 109.47271 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47082 * 240.00173 * 2 1 3 29 29 H 1.08997 * 109.47164 * 120.00162 * 2 1 3 30 30 H 1.08995 * 109.67956 * 52.50629 * 5 3 2 31 31 H 1.08996 * 109.67922 * 291.94920 * 5 3 2 32 32 H 1.09002 * 109.47134 * 59.99751 * 10 7 6 33 33 H 1.08998 * 109.46953 * 300.00489 * 10 7 6 34 34 H 1.09002 * 109.47153 * 59.99820 * 11 10 7 35 35 H 1.09001 * 109.46832 * 300.00011 * 11 10 7 36 36 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.68086 * 170.00817 * 20 6 5 38 38 H 1.08999 * 109.67968 * 290.56772 * 20 6 5 39 39 H 1.08996 * 109.47472 * 179.88240 * 23 21 20 40 40 H 1.09003 * 109.47161 * 299.88303 * 23 21 20 41 41 H 1.09002 * 109.47140 * 59.87927 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9834 0.8401 5 6 3.5679 1.4453 0.1259 6 7 4.0465 2.8237 -0.0645 7 16 5.0845 3.5230 1.0201 8 8 4.8286 2.8408 2.2400 9 8 4.8365 4.9166 0.8940 10 6 6.7370 3.1115 0.3951 11 6 7.7966 3.7097 1.3226 12 6 9.1694 3.3673 0.8037 13 1 9.2755 2.7820 -0.0977 14 6 10.2899 3.8022 1.4792 15 7 10.1607 4.5154 2.5766 16 14 11.9915 3.3784 0.8356 17 1 11.8650 2.5733 -0.4058 18 1 12.7347 4.6297 0.5399 19 1 12.7277 2.5958 1.8607 20 6 3.5710 3.5645 -1.2436 21 6 2.0473 3.4565 -1.3056 22 1 1.6110 4.0050 -0.4708 23 6 1.5445 4.0479 -2.6241 24 8 1.6674 2.0807 -1.2237 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 4.0002 0.7979 -0.6370 31 1 3.8553 1.0902 1.1155 32 1 6.8588 3.5217 -0.6074 33 1 6.8531 2.0283 0.3609 34 1 7.6749 3.2999 2.3253 35 1 7.6802 4.7929 1.3562 36 1 10.9491 4.8210 3.0520 37 1 3.8606 4.6120 -1.1604 38 1 4.0037 3.1340 -2.1467 39 1 0.4583 3.9681 -2.6674 40 1 1.8345 5.0968 -2.6859 41 1 1.9826 3.5001 -3.4585 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247468553.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:29 Heat of formation + Delta-G solvation = -158.406651 kcal Electronic energy + Delta-G solvation = -22340.099442 eV Core-core repulsion = 18959.685310 eV Total energy + Delta-G solvation = -3380.414132 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.61262 -38.32048 -37.10906 -35.97916 -35.89637 -35.46090 -33.15711 -32.36699 -29.26590 -27.65333 -26.88759 -24.56452 -23.47872 -22.40743 -21.85035 -19.92686 -19.17139 -18.42858 -17.88873 -17.33332 -17.15415 -16.59236 -16.31169 -16.07200 -15.57021 -15.23055 -15.14508 -14.63693 -14.46089 -14.08654 -13.75963 -13.59473 -13.47675 -13.27897 -13.19003 -13.09030 -12.97017 -12.81342 -12.77053 -12.60093 -12.30444 -12.25669 -12.13379 -11.92323 -11.82883 -11.76337 -11.36283 -11.24744 -11.04801 -10.67583 -9.77889 -8.28098 -6.42475 -0.80830 1.40279 1.40806 1.54207 1.60473 2.36673 2.65345 2.77515 3.04851 3.06638 3.57642 3.65768 3.92444 3.97169 4.03928 4.05603 4.12752 4.24223 4.33590 4.39713 4.46621 4.63030 4.70825 4.72031 4.81551 4.86689 4.90610 5.01673 5.09123 5.14850 5.22452 5.23785 5.29277 5.31834 5.45892 5.47232 5.66127 6.03504 6.22375 6.71213 7.27999 8.84362 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.026278 B = 0.003832 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.255409 B = 7305.322081 C = 7562.310549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C 0.079 3.921 4 H 0.050 0.950 5 C 0.079 3.921 6 N -1.002 6.002 7 S 2.611 3.389 8 O -0.991 6.991 9 O -0.991 6.991 10 C -0.584 4.584 11 C 0.020 3.980 12 C -0.539 4.539 13 H 0.075 0.925 14 C -0.004 4.004 15 N -0.934 5.934 16 Si 0.975 3.025 17 H -0.256 1.256 18 H -0.278 1.278 19 H -0.277 1.277 20 C 0.079 3.921 21 C 0.074 3.926 22 H 0.050 0.950 23 C -0.137 4.137 24 O -0.374 6.374 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.006 0.994 35 H 0.007 0.993 36 H 0.268 0.732 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.084 -7.799 -11.074 22.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C 0.020 3.980 4 H 0.069 0.931 5 C -0.046 4.046 6 N -0.841 5.841 7 S 2.711 3.289 8 O -0.981 6.981 9 O -0.981 6.981 10 C -0.717 4.717 11 C -0.019 4.019 12 C -0.578 4.578 13 H 0.094 0.906 14 C -0.202 4.202 15 N -0.573 5.573 16 Si 0.799 3.201 17 H -0.179 1.179 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.045 4.045 21 C 0.014 3.986 22 H 0.069 0.931 23 C -0.195 4.195 24 O -0.294 6.294 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.373 -7.302 -10.318 22.302 hybrid contribution 1.551 0.117 0.144 1.562 sum -16.822 -7.185 -10.174 20.931 Atomic orbital electron populations 1.21677 0.94659 1.02285 1.01728 1.21559 0.97214 0.92188 1.04091 1.22544 0.92579 0.95819 0.87061 0.93149 1.22428 0.96071 0.81689 1.04374 1.57729 1.61357 1.24435 1.40558 1.04808 0.76905 0.73311 0.73923 1.93481 1.84742 1.75708 1.44153 1.93483 1.84885 1.33077 1.86637 1.30365 1.17891 1.11937 1.11464 1.18838 0.94228 0.95222 0.93611 1.21534 0.90694 1.34500 1.11085 0.90637 1.26130 1.04489 0.94608 0.95012 1.70107 1.31480 1.37257 1.18503 0.85245 0.77872 0.78236 0.78776 1.17927 1.20317 1.20294 1.22364 0.96190 0.97925 0.88063 1.22424 0.92770 0.83103 1.00262 0.93148 1.21734 1.02330 1.01299 0.94125 1.87914 1.79720 1.23768 1.37959 0.93244 0.92773 0.91246 0.89979 0.89020 0.88324 0.88272 0.84095 0.84098 0.97519 0.97512 0.92341 0.88258 0.88378 0.91027 0.89494 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.81 71.98 0.71 -1.44 16 2 C -0.11 -1.76 5.64 30.59 0.17 -1.59 16 3 C 0.08 1.68 2.78 30.70 0.09 1.76 16 4 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 5 C 0.08 1.81 5.96 86.36 0.51 2.32 16 6 N -1.00 -27.11 3.28 -512.36 -1.68 -28.79 16 7 S 2.61 95.25 5.47 -56.49 -0.31 94.94 16 8 O -0.99 -41.46 16.62 -127.65 -2.12 -43.58 16 9 O -0.99 -41.44 16.61 -127.65 -2.12 -43.56 16 10 C -0.58 -22.25 6.12 71.98 0.44 -21.81 16 11 C 0.02 1.05 4.98 29.85 0.15 1.20 16 12 C -0.54 -29.92 9.11 25.60 0.23 -29.68 16 13 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 14 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 15 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 16 Si 0.98 43.14 29.54 68.60 2.03 45.17 16 17 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 18 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 20 C 0.08 1.80 5.94 86.22 0.51 2.31 16 21 C 0.07 1.54 3.39 30.55 0.10 1.64 16 22 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 23 C -0.14 -2.02 9.57 71.98 0.69 -1.33 16 24 O -0.37 -8.10 9.58 -148.98 -1.43 -9.53 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.88 7.83 -2.39 -0.02 0.86 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 1.16 8.14 -2.38 -0.02 1.15 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.10 2.36 6.88 -2.39 -0.02 2.34 16 32 H 0.14 4.70 8.14 -2.39 -0.02 4.68 16 33 H 0.14 4.70 8.14 -2.39 -0.02 4.68 16 34 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.10 2.35 6.87 -2.39 -0.02 2.34 16 38 H 0.10 1.78 8.13 -2.39 -0.02 1.76 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -73.82 344.20 -0.29 -74.11 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.98 Total: 14.14 kcal Atomic # 6 Polarization: -50.46 SS G_CDS: 4.07 Total: -46.39 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -1.39 Total: -85.31 kcal Atomic # 8 Polarization: -91.00 SS G_CDS: -5.67 Total: -96.67 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 95.25 SS G_CDS: -0.31 Total: 94.94 kcal Total: -73.82 -0.29 -74.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247468553.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.293 kcal (2) G-P(sol) polarization free energy of solvation -73.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds