Wall clock time and date at job start Tue Mar 31 2020 06:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47346 * 2 1 4 4 C 1.53006 * 109.47090 * 119.99732 * 2 1 3 5 5 N 1.46493 * 109.47138 * 299.99773 * 4 2 1 6 6 C 1.34776 * 119.99933 * 179.97438 * 5 4 2 7 7 O 1.21582 * 119.99748 * 0.02562 * 6 5 4 8 8 C 1.47649 * 120.00001 * 180.02562 * 6 5 4 9 9 C 1.40016 * 119.89637 * 0.24992 * 8 6 5 10 10 C 1.36306 * 120.10434 * 180.25839 * 9 8 6 11 11 C 1.40885 * 119.89590 * 359.47343 * 10 9 8 12 12 C 1.41111 * 120.10921 * 180.30311 * 11 10 9 13 13 H 1.07994 * 120.00597 * 154.53119 * 12 11 10 14 14 C 1.40227 * 119.99382 * 334.52933 * 12 11 10 15 15 N 1.30644 * 120.00033 * 343.05813 * 14 12 11 16 16 Si 1.86799 * 119.99848 * 163.06034 * 14 12 11 17 17 H 1.48501 * 109.47101 * 89.99684 * 16 14 12 18 18 H 1.48501 * 109.47179 * 209.99729 * 16 14 12 19 19 H 1.48501 * 109.46949 * 330.00066 * 16 14 12 20 20 C 1.40889 * 119.79071 * 0.27404 * 11 10 9 21 21 C 1.36316 * 119.89281 * 0.02562 * 20 11 10 22 22 C 1.50702 * 109.47208 * 239.99914 * 2 1 3 23 23 O 1.20824 * 120.00002 * 240.00401 * 22 2 1 24 24 O 1.34226 * 120.00025 * 59.99713 * 22 2 1 25 25 H 1.09008 * 109.47134 * 300.00187 * 1 2 3 26 26 H 1.08999 * 109.47433 * 59.99840 * 1 2 3 27 27 H 1.08994 * 109.47136 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47068 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46907 * 300.00002 * 3 2 1 30 30 H 1.08999 * 109.47362 * 59.99738 * 3 2 1 31 31 H 1.08997 * 109.46964 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.46546 * 60.00307 * 4 2 1 33 33 H 0.97004 * 120.00572 * 0.02562 * 5 4 2 34 34 H 1.08002 * 119.94001 * 0.03091 * 9 8 6 35 35 H 1.08006 * 120.05292 * 179.74851 * 10 9 8 36 36 H 0.97005 * 119.99903 * 179.97438 * 15 14 12 37 37 H 1.08001 * 120.05483 * 180.02562 * 20 11 10 38 38 H 1.08000 * 119.94946 * 179.97438 * 21 20 11 39 39 H 0.96692 * 117.00249 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5517 -0.0306 2.4454 6 6 1.8769 -0.4913 3.6695 7 8 2.5759 -1.4798 3.7811 8 6 1.3843 0.2045 4.8750 9 6 0.5752 1.3397 4.7440 10 6 0.1225 1.9883 5.8540 11 6 0.4607 1.5084 7.1347 12 6 -0.0108 2.1728 8.2869 13 1 -0.1216 1.6317 9.2150 14 6 -0.3355 3.5356 8.2268 15 7 0.0959 4.2667 7.2338 16 14 -1.3849 4.3057 9.5666 17 1 -0.5074 4.8171 10.6501 18 1 -2.1716 5.4282 8.9954 19 1 -2.3098 3.2839 10.1196 20 6 1.2708 0.3627 7.2615 21 6 1.7239 -0.2758 6.1456 22 6 2.0323 -0.7104 -1.2305 23 8 2.7269 -1.6928 -1.1196 24 8 1.7081 -0.2519 -2.4496 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1300 -0.7216 1.2491 32 1 1.6767 -1.7489 1.2493 33 1 0.9938 0.7579 2.3565 34 1 0.3125 1.7039 3.7618 35 1 -0.4983 2.8663 5.7520 36 1 -0.1290 5.2094 7.1920 37 1 1.5323 -0.0091 8.2412 38 1 2.3452 -1.1539 6.2417 39 1 2.0535 -0.7410 -3.2088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000262045776.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:00 Heat of formation + Delta-G solvation = -126.079361 kcal Electronic energy + Delta-G solvation = -22581.472449 eV Core-core repulsion = 19067.016182 eV Total energy + Delta-G solvation = -3514.456267 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.86568 -39.14969 -37.35874 -36.54700 -36.15200 -33.88366 -32.83630 -30.20738 -29.46551 -27.63847 -26.94591 -25.51794 -24.24855 -21.90751 -20.97504 -19.86466 -19.69512 -18.10226 -17.54838 -17.13866 -16.35491 -16.02303 -15.49825 -15.02160 -14.81199 -14.34921 -14.00437 -13.86837 -13.53693 -13.48842 -13.17687 -12.77274 -12.50705 -12.34179 -12.12304 -12.01906 -11.89192 -11.79140 -11.42363 -11.33260 -11.26340 -11.14372 -10.98690 -10.65495 -10.56510 -10.07928 -9.58116 -9.37536 -9.00980 -8.64230 -7.74493 -7.55538 -7.04991 -4.62351 1.96943 2.21232 2.65028 2.89384 2.93289 2.99327 3.01455 3.72502 3.85430 3.85993 4.28104 4.49496 4.57089 4.60725 5.00421 5.35240 5.46340 5.48717 5.54324 5.56188 5.75400 5.81273 5.91035 5.95801 5.99941 6.15110 6.23389 6.30408 6.74805 6.80956 6.86314 7.02148 7.11067 7.41539 7.62111 7.64596 7.75948 7.83813 8.05234 8.18956 8.37731 8.61251 8.73074 9.05045 9.87082 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.003217 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.978704 B = 8701.391685 C = 9444.293766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.065 4.065 3 C -0.144 4.144 4 C 0.144 3.856 5 N -0.740 5.740 6 C 0.572 3.428 7 O -0.571 6.571 8 C -0.283 4.283 9 C -0.063 4.063 10 C -0.177 4.177 11 C 0.129 3.871 12 C -0.443 4.443 13 H 0.085 0.915 14 C 0.074 3.926 15 N -0.773 5.773 16 Si 0.913 3.087 17 H -0.267 1.267 18 H -0.273 1.273 19 H -0.258 1.258 20 C -0.238 4.238 21 C -0.022 4.022 22 C 0.493 3.507 23 O -0.508 6.508 24 O -0.513 6.513 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.397 0.603 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.286 0.714 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.062 0.126 -13.804 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 C -0.201 4.201 4 C 0.019 3.981 5 N -0.395 5.395 6 C 0.367 3.633 7 O -0.453 6.453 8 C -0.288 4.288 9 C -0.083 4.083 10 C -0.196 4.196 11 C 0.126 3.874 12 C -0.470 4.470 13 H 0.103 0.897 14 C -0.147 4.147 15 N -0.396 5.396 16 Si 0.736 3.264 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.181 1.181 20 C -0.258 4.258 21 C -0.041 4.041 22 C 0.334 3.666 23 O -0.395 6.395 24 O -0.324 6.324 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.233 0.767 34 H 0.106 0.894 35 H 0.138 0.862 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -1.513 -0.384 -13.457 13.547 hybrid contribution -0.383 0.536 -0.109 0.667 sum -1.896 0.152 -13.566 13.698 Atomic orbital electron populations 1.21904 0.90906 1.03431 1.03823 1.20703 0.98628 0.97323 0.90035 1.21909 1.01993 0.92351 1.03845 1.20965 0.99622 0.95676 0.81830 1.45896 1.55762 1.32785 1.05063 1.18583 0.78697 0.83197 0.82812 1.90654 1.39983 1.27608 1.87033 1.18877 1.14794 1.03443 0.91647 1.20447 0.96625 0.94177 0.97007 1.20965 1.04820 1.02170 0.91634 1.17786 0.86636 0.89877 0.93125 1.19842 1.35873 0.93907 0.97421 0.89732 1.26090 0.94086 0.97599 0.96896 1.69737 1.32710 1.08069 1.29107 0.86221 0.80308 0.79124 0.80707 1.19166 1.19800 1.18134 1.20732 1.06311 1.02118 0.96602 1.20367 0.95584 0.96639 0.91487 1.23180 0.76762 0.82115 0.84573 1.90758 1.35539 1.25995 1.87188 1.84513 1.72281 1.58959 1.16687 0.90431 0.90851 0.91672 0.91652 0.90857 0.90388 0.90988 0.90999 0.76675 0.89447 0.86190 0.90251 0.88359 0.88069 0.73208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.23 37.16 0.31 -1.02 16 2 C -0.07 -0.71 0.72 -155.65 -0.11 -0.82 16 3 C -0.14 -1.36 8.23 37.16 0.31 -1.05 16 4 C 0.14 2.11 3.85 -4.04 -0.02 2.10 16 5 N -0.74 -11.98 4.91 -61.31 -0.30 -12.28 16 6 C 0.57 12.08 7.76 -12.42 -0.10 11.98 16 7 O -0.57 -13.80 16.32 5.29 0.09 -13.71 16 8 C -0.28 -6.36 5.89 -104.73 -0.62 -6.98 16 9 C -0.06 -1.36 9.47 -39.61 -0.38 -1.73 16 10 C -0.18 -4.21 8.63 -39.28 -0.34 -4.55 16 11 C 0.13 3.23 5.57 -106.80 -0.59 2.64 16 12 C -0.44 -10.85 9.05 -37.75 -0.34 -11.19 16 13 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 14 C 0.07 1.70 5.15 -17.31 -0.09 1.61 16 15 N -0.77 -18.14 10.95 55.56 0.61 -17.54 16 16 Si 0.91 16.98 29.59 -169.99 -5.03 11.95 16 17 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 18 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 19 H -0.26 -4.79 7.11 56.52 0.40 -4.38 16 20 C -0.24 -5.71 9.73 -39.27 -0.38 -6.09 16 21 C -0.02 -0.50 9.52 -39.61 -0.38 -0.88 16 22 C 0.49 5.50 6.92 36.01 0.25 5.75 16 23 O -0.51 -7.40 16.74 -18.75 -0.31 -7.71 16 24 O -0.51 -4.02 13.23 -39.25 -0.52 -4.54 16 25 H 0.08 0.71 6.86 -51.92 -0.36 0.35 16 26 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 30 H 0.08 0.74 6.86 -51.93 -0.36 0.38 16 31 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 32 H 0.07 1.16 8.10 -51.93 -0.42 0.73 16 33 H 0.40 5.53 4.16 -40.82 -0.17 5.36 16 34 H 0.09 1.55 6.37 -52.49 -0.33 1.21 16 35 H 0.12 2.89 6.18 -52.48 -0.32 2.56 16 36 H 0.29 6.04 8.29 -40.82 -0.34 5.70 16 37 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.10 2.31 7.63 -52.49 -0.40 1.91 16 39 H 0.41 1.52 9.10 45.56 0.41 1.93 16 LS Contribution 331.94 15.07 5.00 5.00 Total: -1.00 -30.61 331.94 -6.97 -37.58 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -4.03 Total: 11.50 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -2.48 Total: -10.25 kcal Atomic # 7 Polarization: -30.12 SS G_CDS: 0.31 Total: -29.81 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.75 Total: -25.97 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.95 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.61 -6.97 -37.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262045776.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.498 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds