Wall clock time and date at job start Tue Mar 31 2020 06:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47346 * 2 1 4 4 C 1.53006 * 109.47090 * 119.99732 * 2 1 3 5 5 N 1.46493 * 109.47138 * 299.99773 * 4 2 1 6 6 C 1.34776 * 119.99933 * 179.97438 * 5 4 2 7 7 O 1.21582 * 119.99748 * 0.02562 * 6 5 4 8 8 C 1.47649 * 120.00001 * 180.02562 * 6 5 4 9 9 C 1.40016 * 119.89637 * 0.24992 * 8 6 5 10 10 C 1.36306 * 120.10434 * 180.25839 * 9 8 6 11 11 C 1.40885 * 119.89590 * 359.47343 * 10 9 8 12 12 C 1.41111 * 120.10921 * 180.30311 * 11 10 9 13 13 H 1.07994 * 120.00597 * 154.53119 * 12 11 10 14 14 C 1.40227 * 119.99382 * 334.52933 * 12 11 10 15 15 N 1.30644 * 120.00033 * 343.05813 * 14 12 11 16 16 Si 1.86799 * 119.99848 * 163.06034 * 14 12 11 17 17 H 1.48501 * 109.47101 * 89.99684 * 16 14 12 18 18 H 1.48501 * 109.47179 * 209.99729 * 16 14 12 19 19 H 1.48501 * 109.46949 * 330.00066 * 16 14 12 20 20 C 1.40889 * 119.79071 * 0.27404 * 11 10 9 21 21 C 1.36316 * 119.89281 * 0.02562 * 20 11 10 22 22 C 1.50702 * 109.47208 * 239.99914 * 2 1 3 23 23 O 1.20824 * 120.00002 * 240.00401 * 22 2 1 24 24 O 1.34226 * 120.00025 * 59.99713 * 22 2 1 25 25 H 1.09008 * 109.47134 * 300.00187 * 1 2 3 26 26 H 1.08999 * 109.47433 * 59.99840 * 1 2 3 27 27 H 1.08994 * 109.47136 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47068 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46907 * 300.00002 * 3 2 1 30 30 H 1.08999 * 109.47362 * 59.99738 * 3 2 1 31 31 H 1.08997 * 109.46964 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.46546 * 60.00307 * 4 2 1 33 33 H 0.97004 * 120.00572 * 0.02562 * 5 4 2 34 34 H 1.08002 * 119.94001 * 0.03091 * 9 8 6 35 35 H 1.08006 * 120.05292 * 179.74851 * 10 9 8 36 36 H 0.97005 * 119.99903 * 179.97438 * 15 14 12 37 37 H 1.08001 * 120.05483 * 180.02562 * 20 11 10 38 38 H 1.08000 * 119.94946 * 179.97438 * 21 20 11 39 39 H 0.96692 * 117.00249 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5517 -0.0306 2.4454 6 6 1.8769 -0.4913 3.6695 7 8 2.5759 -1.4798 3.7811 8 6 1.3843 0.2045 4.8750 9 6 0.5752 1.3397 4.7440 10 6 0.1225 1.9883 5.8540 11 6 0.4607 1.5084 7.1347 12 6 -0.0108 2.1728 8.2869 13 1 -0.1216 1.6317 9.2150 14 6 -0.3355 3.5356 8.2268 15 7 0.0959 4.2667 7.2338 16 14 -1.3849 4.3057 9.5666 17 1 -0.5074 4.8171 10.6501 18 1 -2.1716 5.4282 8.9954 19 1 -2.3098 3.2839 10.1196 20 6 1.2708 0.3627 7.2615 21 6 1.7239 -0.2758 6.1456 22 6 2.0323 -0.7104 -1.2305 23 8 2.7269 -1.6928 -1.1196 24 8 1.7081 -0.2519 -2.4496 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1300 -0.7216 1.2491 32 1 1.6767 -1.7489 1.2493 33 1 0.9938 0.7579 2.3565 34 1 0.3125 1.7039 3.7618 35 1 -0.4983 2.8663 5.7520 36 1 -0.1290 5.2094 7.1920 37 1 1.5323 -0.0091 8.2412 38 1 2.3452 -1.1539 6.2417 39 1 2.0535 -0.7410 -3.2088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262045776.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:59 Heat of formation + Delta-G solvation = -145.541676 kcal Electronic energy + Delta-G solvation = -22582.316398 eV Core-core repulsion = 19067.016182 eV Total energy + Delta-G solvation = -3515.300216 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.80375 -40.72196 -38.99182 -37.69562 -37.10201 -35.65228 -34.22482 -31.94344 -31.28228 -28.40706 -28.37238 -26.94500 -25.27784 -23.54710 -22.76161 -21.36227 -20.79320 -19.34830 -18.93795 -18.63106 -17.53128 -17.06819 -16.93232 -16.48355 -16.14654 -15.75236 -15.62967 -15.02553 -14.74294 -14.73969 -14.59375 -14.38374 -13.85539 -13.68314 -13.39561 -13.23195 -13.11183 -12.88936 -12.82654 -12.62329 -12.60205 -12.35075 -12.20440 -12.06705 -11.77249 -11.46898 -11.35571 -11.10770 -10.76681 -10.14240 -9.55784 -9.38605 -8.77287 -6.46815 0.44763 1.10454 1.16887 1.40623 1.44194 1.56138 1.77233 2.12374 2.19754 2.54099 2.79769 3.29942 3.63727 3.71342 3.79600 4.19098 4.27236 4.33517 4.45876 4.49565 4.64470 4.70824 4.79803 4.81462 4.87793 4.94100 5.04967 5.17037 5.21720 5.22048 5.31505 5.45210 5.54821 5.60631 5.83131 5.95313 6.00885 6.24699 6.55497 6.67056 6.78984 6.90489 6.92825 7.41424 8.17926 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.003217 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.978704 B = 8701.391685 C = 9444.293766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.060 4.060 3 C -0.143 4.143 4 C 0.145 3.855 5 N -0.716 5.716 6 C 0.572 3.428 7 O -0.607 6.607 8 C -0.292 4.292 9 C -0.051 4.051 10 C -0.195 4.195 11 C 0.102 3.898 12 C -0.474 4.474 13 H 0.084 0.916 14 C 0.039 3.961 15 N -0.797 5.797 16 Si 0.986 3.014 17 H -0.263 1.263 18 H -0.261 1.261 19 H -0.259 1.259 20 C -0.253 4.253 21 C -0.034 4.034 22 C 0.501 3.499 23 O -0.550 6.550 24 O -0.498 6.498 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.410 0.590 34 H 0.128 0.872 35 H 0.116 0.884 36 H 0.297 0.703 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.442 1.897 -15.272 15.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.061 4.061 3 C -0.200 4.200 4 C 0.020 3.980 5 N -0.370 5.370 6 C 0.366 3.634 7 O -0.491 6.491 8 C -0.296 4.296 9 C -0.070 4.070 10 C -0.214 4.214 11 C 0.099 3.901 12 C -0.501 4.501 13 H 0.102 0.898 14 C -0.180 4.180 15 N -0.420 5.420 16 Si 0.806 3.194 17 H -0.188 1.188 18 H -0.185 1.185 19 H -0.182 1.182 20 C -0.273 4.273 21 C -0.053 4.053 22 C 0.344 3.656 23 O -0.440 6.440 24 O -0.311 6.311 25 H 0.099 0.901 26 H 0.115 0.885 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.250 0.750 34 H 0.146 0.854 35 H 0.134 0.866 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -2.909 1.417 -14.995 15.340 hybrid contribution 0.091 -0.033 0.223 0.243 sum -2.818 1.384 -14.772 15.102 Atomic orbital electron populations 1.21942 0.89219 1.03585 1.05171 1.20609 0.99799 0.97580 0.88126 1.21944 1.01667 0.91209 1.05146 1.20958 0.98640 0.95445 0.82921 1.45621 1.54632 1.32641 1.04147 1.18447 0.78420 0.82697 0.83866 1.90636 1.41649 1.29150 1.87703 1.19122 1.14777 1.03827 0.91923 1.20724 0.94993 0.92983 0.98308 1.21015 1.05745 1.02665 0.91978 1.18137 0.87244 0.90491 0.94202 1.20106 1.37384 0.95185 0.97451 0.89828 1.26881 0.94591 0.97301 0.99214 1.69746 1.32918 1.08903 1.30451 0.85133 0.78389 0.78227 0.77653 1.18750 1.18460 1.18233 1.20855 1.06868 1.02488 0.97080 1.20501 0.95815 0.96785 0.92177 1.23111 0.75783 0.81227 0.85506 1.90759 1.37533 1.27858 1.87852 1.84450 1.71668 1.58696 1.16312 0.90068 0.88516 0.92180 0.92308 0.88497 0.90139 0.92738 0.92578 0.75036 0.85414 0.86569 0.89135 0.87964 0.88216 0.70805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.23 71.98 0.59 -1.62 16 2 C -0.06 -1.17 0.72 -52.92 -0.04 -1.21 16 3 C -0.14 -2.29 8.23 71.98 0.59 -1.70 16 4 C 0.14 4.18 3.85 86.38 0.33 4.51 16 5 N -0.72 -22.33 4.91 -466.16 -2.29 -24.62 16 6 C 0.57 24.05 7.76 86.73 0.67 24.72 16 7 O -0.61 -29.83 16.32 -3.97 -0.06 -29.89 16 8 C -0.29 -13.10 5.89 -19.93 -0.12 -13.21 16 9 C -0.05 -2.14 9.47 22.25 0.21 -1.93 16 10 C -0.19 -9.27 8.63 22.47 0.19 -9.08 16 11 C 0.10 5.23 5.57 -21.28 -0.12 5.11 16 12 C -0.47 -23.56 9.05 23.46 0.21 -23.35 16 13 H 0.08 4.01 7.90 -2.91 -0.02 3.98 16 14 C 0.04 1.78 5.15 85.35 0.44 2.22 16 15 N -0.80 -36.93 10.95 21.87 0.24 -36.69 16 16 Si 0.99 33.99 29.59 68.60 2.03 36.02 16 17 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 18 H -0.26 -8.39 7.11 99.48 0.71 -7.68 16 19 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 20 C -0.25 -12.51 9.73 22.47 0.22 -12.29 16 21 C -0.03 -1.61 9.52 22.25 0.21 -1.40 16 22 C 0.50 10.27 6.92 71.24 0.49 10.76 16 23 O -0.55 -15.75 16.74 21.97 0.37 -15.38 16 24 O -0.50 -6.25 13.23 -51.38 -0.68 -6.93 16 25 H 0.08 1.22 6.86 -2.38 -0.02 1.20 16 26 H 0.10 1.10 8.11 -2.39 -0.02 1.08 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.10 1.14 8.11 -2.38 -0.02 1.12 16 30 H 0.08 1.26 6.86 -2.39 -0.02 1.25 16 31 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 32 H 0.06 1.82 8.10 -2.39 -0.02 1.80 16 33 H 0.41 10.43 4.16 -92.71 -0.39 10.04 16 34 H 0.13 4.15 6.37 -2.91 -0.02 4.14 16 35 H 0.12 5.57 6.18 -2.91 -0.02 5.55 16 36 H 0.30 12.19 8.29 -92.70 -0.77 11.42 16 37 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 38 H 0.10 4.71 7.63 -2.91 -0.02 4.69 16 39 H 0.43 1.88 9.10 -74.06 -0.67 1.21 16 Total: -1.00 -67.52 331.94 3.54 -63.98 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.04 Total: 32.00 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 3.90 Total: -18.48 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -2.05 Total: -61.31 kcal Atomic # 8 Polarization: -51.82 SS G_CDS: -0.38 Total: -52.20 kcal Atomic # 14 Polarization: 33.99 SS G_CDS: 2.03 Total: 36.02 kcal Total: -67.52 3.54 -63.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262045776.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.566 kcal (2) G-P(sol) polarization free energy of solvation -67.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds