Wall clock time and date at job start Tue Mar 31 2020 06:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47227 * 2 1 4 4 C 1.53004 * 109.46731 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47470 * 304.99882 * 4 3 2 6 6 N 1.46499 * 109.47177 * 65.00084 * 4 3 2 7 7 C 1.34776 * 120.00042 * 204.99539 * 6 4 3 8 8 O 1.21545 * 119.99793 * 0.02562 * 7 6 4 9 9 C 1.47886 * 120.00214 * 179.97438 * 7 6 4 10 10 C 1.39917 * 120.02266 * 359.73441 * 9 7 6 11 11 C 1.38326 * 120.35736 * 179.71876 * 10 9 7 12 12 C 1.37758 * 120.41248 * 0.54852 * 11 10 9 13 13 C 1.40747 * 120.03707 * 359.72951 * 12 11 10 14 14 C 1.41432 * 120.17665 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00175 * 334.93453 * 14 13 12 16 16 C 1.39946 * 119.99904 * 154.92959 * 14 13 12 17 17 N 1.30826 * 119.99853 * 342.58161 * 16 14 13 18 18 Si 1.86801 * 119.99885 * 162.57863 * 16 14 13 19 19 H 1.48503 * 109.47215 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47058 * 120.00015 * 18 16 14 21 21 H 1.48501 * 109.47158 * 240.00456 * 18 16 14 22 22 C 1.38993 * 120.02460 * 180.02562 * 9 7 6 23 23 C 1.50700 * 109.46745 * 184.99793 * 4 3 2 24 24 O 1.20830 * 120.00174 * 240.00072 * 23 4 3 25 25 O 1.34229 * 119.99848 * 59.72805 * 23 4 3 26 26 H 1.09002 * 109.47291 * 300.00058 * 1 2 3 27 27 H 1.08994 * 109.47266 * 59.99922 * 1 2 3 28 28 H 1.08999 * 109.47778 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46758 * 239.99392 * 2 1 3 30 30 H 1.09007 * 109.46937 * 119.99987 * 2 1 3 31 31 H 1.09002 * 109.47032 * 59.99783 * 3 2 1 32 32 H 1.08997 * 109.47214 * 299.99698 * 3 2 1 33 33 H 0.97003 * 119.99786 * 24.99460 * 6 4 3 34 34 H 1.07998 * 119.82419 * 359.96591 * 10 9 7 35 35 H 1.08002 * 119.79558 * 180.25333 * 11 10 9 36 36 H 1.07999 * 119.98139 * 179.74639 * 12 11 10 37 37 H 0.96999 * 119.99781 * 179.97438 * 17 16 14 38 38 H 1.07998 * 120.20471 * 359.97438 * 22 9 7 39 39 H 0.96703 * 117.00120 * 180.27563 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 1 3.9330 0.8530 0.8427 6 7 4.0589 0.8584 -1.2509 7 6 5.2809 0.2918 -1.2981 8 8 5.9771 0.2649 -0.3022 9 6 5.7741 -0.2981 -2.5613 10 6 4.9704 -0.2734 -3.7063 11 6 5.4271 -0.8180 -4.8929 12 6 6.6735 -1.4010 -4.9585 13 6 7.4939 -1.4404 -3.8155 14 6 8.7743 -2.0377 -3.8797 15 1 8.9802 -2.7955 -4.6212 16 6 9.7745 -1.6468 -2.9824 17 7 9.6591 -0.5225 -2.3234 18 14 11.2743 -2.7303 -2.7255 19 1 11.1656 -3.9376 -3.5833 20 1 12.4995 -1.9740 -3.0891 21 1 11.3504 -3.1404 -1.3003 22 6 7.0340 -0.8830 -2.6103 23 6 4.0724 2.8578 0.1244 24 8 4.7674 3.3303 -0.7437 25 8 3.7431 3.5954 1.1965 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.5030 0.8795 -2.0456 34 1 3.9896 0.1769 -3.6644 35 1 4.8007 -0.7903 -5.7723 36 1 7.0215 -1.8277 -5.8876 37 1 10.3522 -0.2517 -1.7012 38 1 7.6561 -0.9082 -1.7279 39 1 4.0857 4.4991 1.2296 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000262147549.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:37 Heat of formation + Delta-G solvation = -125.371937 kcal Electronic energy + Delta-G solvation = -22944.738448 eV Core-core repulsion = 19430.312858 eV Total energy + Delta-G solvation = -3514.425590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.52673 -39.01339 -37.15627 -36.12922 -35.96237 -33.79061 -33.20869 -30.64212 -29.47388 -29.03031 -25.42149 -25.13417 -22.96047 -21.56901 -21.10336 -20.65980 -19.70059 -18.05572 -17.78478 -16.81146 -16.14858 -16.05531 -15.44410 -15.07923 -14.82108 -14.64279 -13.97654 -13.87008 -13.53532 -13.30797 -13.18410 -12.72235 -12.58813 -12.50582 -12.03012 -11.64860 -11.63346 -11.38716 -11.27772 -11.17555 -11.08615 -10.85895 -10.72937 -10.50584 -10.45245 -10.05018 -9.68893 -9.22205 -9.13665 -8.92878 -7.64191 -7.51630 -6.78935 -4.40947 2.15114 2.29048 2.79961 2.89768 3.08649 3.13478 3.15425 3.56395 3.89019 3.93132 4.47463 4.63986 4.72795 4.82908 5.15814 5.29509 5.31808 5.42419 5.60220 5.60648 5.66487 5.76139 5.89577 6.00853 6.07747 6.14774 6.26831 6.52578 6.61710 6.71129 6.98071 7.00649 7.21038 7.37723 7.67513 7.72842 7.90306 7.95336 8.02002 8.17781 8.50356 8.79443 8.82768 8.86030 10.15821 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018503 B = 0.004188 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.934571 B = 6684.704243 C = 7367.901819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.120 4.120 4 C 0.160 3.840 5 H 0.125 0.875 6 N -0.715 5.715 7 C 0.573 3.427 8 O -0.542 6.542 9 C -0.126 4.126 10 C -0.216 4.216 11 C -0.097 4.097 12 C -0.210 4.210 13 C 0.099 3.901 14 C -0.460 4.460 15 H 0.082 0.918 16 C 0.073 3.927 17 N -0.783 5.783 18 Si 0.910 3.090 19 H -0.260 1.260 20 H -0.274 1.274 21 H -0.271 1.271 22 C -0.090 4.090 23 C 0.460 3.540 24 O -0.496 6.496 25 O -0.520 6.520 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.406 0.594 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.284 0.716 38 H 0.134 0.866 39 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.326 3.453 5.382 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.158 4.158 4 C 0.052 3.948 5 H 0.143 0.857 6 N -0.370 5.370 7 C 0.364 3.636 8 O -0.419 6.419 9 C -0.129 4.129 10 C -0.236 4.236 11 C -0.116 4.116 12 C -0.230 4.230 13 C 0.096 3.904 14 C -0.489 4.489 15 H 0.100 0.900 16 C -0.146 4.146 17 N -0.407 5.407 18 Si 0.734 3.266 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.196 1.196 22 C -0.110 4.110 23 C 0.299 3.701 24 O -0.382 6.382 25 O -0.332 6.332 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.242 0.758 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.151 0.849 39 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -13.630 3.318 6.002 15.259 hybrid contribution 0.773 0.496 -0.273 0.959 sum -12.857 3.814 5.730 14.584 Atomic orbital electron populations 1.21757 0.95447 1.01873 1.01755 1.21547 0.95961 0.95439 1.03379 1.21864 0.90746 0.99068 1.04073 1.20362 0.95307 0.87559 0.91568 0.85745 1.45771 1.19318 1.59957 1.11998 1.18907 0.79470 0.75969 0.89215 1.90697 1.55774 1.58647 1.36797 1.19367 0.97110 1.04877 0.91535 1.20323 0.98978 1.10431 0.93844 1.20431 0.96000 0.99173 0.95952 1.21106 0.96362 1.08068 0.97502 1.17596 0.92750 0.89957 0.90065 1.19620 0.94914 1.19716 1.14650 0.90006 1.25976 1.00267 0.94377 0.94012 1.69805 1.33509 1.17682 1.19708 0.86235 0.80269 0.80857 0.79248 1.18318 1.19926 1.19564 1.21634 0.92480 0.97933 0.98981 1.24330 0.77644 0.89429 0.78695 1.90767 1.34531 1.72157 1.40710 1.84514 1.72442 1.30579 1.45625 0.92730 0.92686 0.92496 0.91001 0.91344 0.89137 0.90801 0.75752 0.89249 0.88846 0.88570 0.90478 0.84881 0.73519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.75 16 2 C -0.13 -1.14 5.82 -26.73 -0.16 -1.29 16 3 C -0.12 -1.12 4.72 -26.73 -0.13 -1.25 16 4 C 0.16 2.20 2.48 -69.08 -0.17 2.03 16 5 H 0.13 1.79 7.58 -51.93 -0.39 1.40 16 6 N -0.72 -11.86 4.01 -55.87 -0.22 -12.08 16 7 C 0.57 12.66 7.60 -12.31 -0.09 12.57 16 8 O -0.54 -13.65 15.99 5.33 0.09 -13.57 16 9 C -0.13 -3.01 5.87 -105.04 -0.62 -3.62 16 10 C -0.22 -4.57 9.55 -38.92 -0.37 -4.94 16 11 C -0.10 -2.08 10.01 -39.72 -0.40 -2.48 16 12 C -0.21 -5.03 9.78 -38.81 -0.38 -5.41 16 13 C 0.10 2.64 5.57 -106.87 -0.59 2.04 16 14 C -0.46 -12.18 9.05 -37.73 -0.34 -12.52 16 15 H 0.08 2.05 7.90 -52.48 -0.41 1.64 16 16 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 17 N -0.78 -21.14 10.97 55.55 0.61 -20.53 16 18 Si 0.91 18.93 29.59 -169.99 -5.03 13.90 16 19 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 C -0.09 -2.44 8.23 -38.44 -0.32 -2.75 16 23 C 0.46 6.95 7.66 36.01 0.28 7.23 16 24 O -0.50 -9.68 17.08 -18.75 -0.32 -10.00 16 25 O -0.52 -5.78 13.22 -39.25 -0.52 -6.30 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.73 7.75 -51.93 -0.40 0.32 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.73 7.99 -51.93 -0.41 0.31 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.41 5.86 6.62 -40.82 -0.27 5.59 16 34 H 0.09 1.55 6.38 -52.49 -0.33 1.22 16 35 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 37 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 38 H 0.13 3.89 5.77 -52.49 -0.30 3.59 16 39 H 0.41 2.92 9.10 45.56 0.41 3.34 16 LS Contribution 337.80 15.07 5.09 5.09 Total: -1.00 -33.18 337.80 -7.53 -40.71 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -4.21 Total: 12.14 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -3.01 Total: -9.36 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.39 Total: -32.61 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.75 Total: -29.87 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.18 -7.53 -40.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262147549.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.657 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds