Wall clock time and date at job start Tue Mar 31 2020 06:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47227 * 2 1 4 4 C 1.53004 * 109.46731 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47470 * 304.99882 * 4 3 2 6 6 N 1.46499 * 109.47177 * 65.00084 * 4 3 2 7 7 C 1.34776 * 120.00042 * 204.99539 * 6 4 3 8 8 O 1.21545 * 119.99793 * 0.02562 * 7 6 4 9 9 C 1.47886 * 120.00214 * 179.97438 * 7 6 4 10 10 C 1.39917 * 120.02266 * 359.73441 * 9 7 6 11 11 C 1.38326 * 120.35736 * 179.71876 * 10 9 7 12 12 C 1.37758 * 120.41248 * 0.54852 * 11 10 9 13 13 C 1.40747 * 120.03707 * 359.72951 * 12 11 10 14 14 C 1.41432 * 120.17665 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00175 * 334.93453 * 14 13 12 16 16 C 1.39946 * 119.99904 * 154.92959 * 14 13 12 17 17 N 1.30826 * 119.99853 * 342.58161 * 16 14 13 18 18 Si 1.86801 * 119.99885 * 162.57863 * 16 14 13 19 19 H 1.48503 * 109.47215 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47058 * 120.00015 * 18 16 14 21 21 H 1.48501 * 109.47158 * 240.00456 * 18 16 14 22 22 C 1.38993 * 120.02460 * 180.02562 * 9 7 6 23 23 C 1.50700 * 109.46745 * 184.99793 * 4 3 2 24 24 O 1.20830 * 120.00174 * 240.00072 * 23 4 3 25 25 O 1.34229 * 119.99848 * 59.72805 * 23 4 3 26 26 H 1.09002 * 109.47291 * 300.00058 * 1 2 3 27 27 H 1.08994 * 109.47266 * 59.99922 * 1 2 3 28 28 H 1.08999 * 109.47778 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46758 * 239.99392 * 2 1 3 30 30 H 1.09007 * 109.46937 * 119.99987 * 2 1 3 31 31 H 1.09002 * 109.47032 * 59.99783 * 3 2 1 32 32 H 1.08997 * 109.47214 * 299.99698 * 3 2 1 33 33 H 0.97003 * 119.99786 * 24.99460 * 6 4 3 34 34 H 1.07998 * 119.82419 * 359.96591 * 10 9 7 35 35 H 1.08002 * 119.79558 * 180.25333 * 11 10 9 36 36 H 1.07999 * 119.98139 * 179.74639 * 12 11 10 37 37 H 0.96999 * 119.99781 * 179.97438 * 17 16 14 38 38 H 1.07998 * 120.20471 * 359.97438 * 22 9 7 39 39 H 0.96703 * 117.00120 * 180.27563 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 1 3.9330 0.8530 0.8427 6 7 4.0589 0.8584 -1.2509 7 6 5.2809 0.2918 -1.2981 8 8 5.9771 0.2649 -0.3022 9 6 5.7741 -0.2981 -2.5613 10 6 4.9704 -0.2734 -3.7063 11 6 5.4271 -0.8180 -4.8929 12 6 6.6735 -1.4010 -4.9585 13 6 7.4939 -1.4404 -3.8155 14 6 8.7743 -2.0377 -3.8797 15 1 8.9802 -2.7955 -4.6212 16 6 9.7745 -1.6468 -2.9824 17 7 9.6591 -0.5225 -2.3234 18 14 11.2743 -2.7303 -2.7255 19 1 11.1656 -3.9376 -3.5833 20 1 12.4995 -1.9740 -3.0891 21 1 11.3504 -3.1404 -1.3003 22 6 7.0340 -0.8830 -2.6103 23 6 4.0724 2.8578 0.1244 24 8 4.7674 3.3303 -0.7437 25 8 3.7431 3.5954 1.1965 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.5030 0.8795 -2.0456 34 1 3.9896 0.1769 -3.6644 35 1 4.8007 -0.7903 -5.7723 36 1 7.0215 -1.8277 -5.8876 37 1 10.3522 -0.2517 -1.7012 38 1 7.6561 -0.9082 -1.7279 39 1 4.0857 4.4991 1.2296 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262147549.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:37 Heat of formation + Delta-G solvation = -147.710828 kcal Electronic energy + Delta-G solvation = -22945.707135 eV Core-core repulsion = 19430.312858 eV Total energy + Delta-G solvation = -3515.394277 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.82436 -40.58358 -38.88702 -37.35209 -37.09810 -35.63634 -34.43306 -32.25974 -31.31409 -30.33875 -27.22070 -26.13591 -24.62057 -22.86883 -22.41649 -21.90794 -21.35308 -19.61009 -19.16000 -18.18910 -17.73209 -17.44380 -16.78304 -16.63163 -16.39685 -15.81499 -15.55225 -15.41233 -15.02577 -14.54834 -14.36674 -14.32400 -14.26897 -13.50315 -13.42044 -12.98798 -12.82187 -12.79936 -12.65620 -12.54515 -12.37060 -12.18805 -12.05663 -11.93396 -11.65493 -11.53483 -11.51161 -11.09888 -10.89720 -10.40468 -9.50542 -9.39910 -8.67362 -6.39585 0.32881 0.99212 1.09678 1.35696 1.45365 1.52462 1.66672 2.09050 2.18657 2.34357 2.78225 3.53651 3.68366 3.86297 4.01339 4.05017 4.29554 4.40269 4.41761 4.57183 4.63300 4.76762 4.87919 4.89832 5.01534 5.07420 5.16956 5.20593 5.29659 5.30890 5.36809 5.50041 5.51257 5.53515 5.83840 5.90280 6.03679 6.26577 6.42138 6.61806 6.86727 6.89477 6.93327 7.18574 8.29690 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018503 B = 0.004188 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.934571 B = 6684.704243 C = 7367.901819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C -0.106 4.106 4 C 0.154 3.846 5 H 0.118 0.882 6 N -0.694 5.694 7 C 0.570 3.430 8 O -0.584 6.584 9 C -0.139 4.139 10 C -0.195 4.195 11 C -0.095 4.095 12 C -0.215 4.215 13 C 0.067 3.933 14 C -0.497 4.497 15 H 0.086 0.914 16 C 0.028 3.972 17 N -0.829 5.829 18 Si 0.984 3.016 19 H -0.249 1.249 20 H -0.265 1.265 21 H -0.270 1.270 22 C -0.130 4.130 23 C 0.466 3.534 24 O -0.547 6.547 25 O -0.502 6.502 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.418 0.582 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.110 0.890 37 H 0.285 0.715 38 H 0.097 0.903 39 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.079 3.812 4.830 18.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.144 4.144 4 C 0.047 3.953 5 H 0.135 0.865 6 N -0.348 5.348 7 C 0.361 3.639 8 O -0.465 6.465 9 C -0.142 4.142 10 C -0.215 4.215 11 C -0.113 4.113 12 C -0.235 4.235 13 C 0.065 3.935 14 C -0.527 4.527 15 H 0.104 0.896 16 C -0.186 4.186 17 N -0.454 5.454 18 Si 0.804 3.196 19 H -0.172 1.172 20 H -0.190 1.190 21 H -0.195 1.195 22 C -0.151 4.151 23 C 0.307 3.693 24 O -0.437 6.437 25 O -0.315 6.315 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.257 0.743 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.128 0.872 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -16.460 3.706 5.450 17.730 hybrid contribution 1.381 0.496 -0.086 1.470 sum -15.078 4.202 5.364 16.546 Atomic orbital electron populations 1.21726 0.93807 1.02273 1.02647 1.21551 0.97319 0.94900 1.02635 1.21892 0.86804 0.99809 1.05890 1.20710 0.98210 0.86668 0.89740 0.86477 1.45505 1.17295 1.58299 1.13708 1.18764 0.80794 0.76274 0.88110 1.90668 1.57422 1.60484 1.37917 1.19715 0.96617 1.04296 0.93618 1.20853 1.00090 1.08108 0.92450 1.20935 0.95391 0.97354 0.97624 1.21431 0.97157 1.07781 0.97101 1.17947 0.93710 0.90880 0.90969 1.19903 0.95763 1.20860 1.16129 0.89641 1.26890 1.03286 0.95245 0.93186 1.69915 1.34840 1.19698 1.20983 0.85132 0.76321 0.79064 0.79042 1.17211 1.18983 1.19517 1.21440 0.94052 1.01306 0.98268 1.24446 0.76428 0.89850 0.78546 1.90761 1.36865 1.73355 1.42725 1.84456 1.71686 1.31855 1.43492 0.91687 0.91947 0.92424 0.92166 0.91856 0.86934 0.89266 0.74279 0.84571 0.84160 0.87191 0.90407 0.88460 0.71187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.98 16 2 C -0.13 -1.95 5.82 30.59 0.18 -1.77 16 3 C -0.11 -1.66 4.72 30.59 0.14 -1.51 16 4 C 0.15 4.01 2.48 44.25 0.11 4.12 16 5 H 0.12 3.31 7.58 -2.39 -0.02 3.29 16 6 N -0.69 -22.15 4.01 -448.94 -1.80 -23.95 16 7 C 0.57 25.60 7.60 86.80 0.66 26.26 16 8 O -0.58 -30.82 15.99 -3.86 -0.06 -30.88 16 9 C -0.14 -6.75 5.87 -20.13 -0.12 -6.87 16 10 C -0.20 -7.79 9.55 22.70 0.22 -7.58 16 11 C -0.10 -3.80 10.01 22.18 0.22 -3.58 16 12 C -0.21 -10.15 9.78 22.77 0.22 -9.93 16 13 C 0.07 3.71 5.57 -21.32 -0.12 3.60 16 14 C -0.50 -27.50 9.05 23.47 0.21 -27.29 16 15 H 0.09 4.44 7.90 -2.91 -0.02 4.42 16 16 C 0.03 1.52 5.14 85.26 0.44 1.96 16 17 N -0.83 -47.63 10.97 21.83 0.24 -47.39 16 18 Si 0.98 40.34 29.59 68.60 2.03 42.37 16 19 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 20 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 21 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 22 C -0.13 -7.40 8.23 23.01 0.19 -7.21 16 23 C 0.47 13.45 7.66 71.24 0.55 14.00 16 24 O -0.55 -21.14 17.08 21.95 0.37 -20.77 16 25 O -0.50 -9.97 13.22 -51.40 -0.68 -10.65 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 1.07 7.75 -2.39 -0.02 1.05 16 30 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.11 1.35 7.99 -2.39 -0.02 1.33 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.42 10.90 6.62 -92.71 -0.61 10.29 16 34 H 0.14 4.09 6.38 -2.91 -0.02 4.07 16 35 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 36 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 37 H 0.29 15.13 8.30 -92.71 -0.77 14.36 16 38 H 0.10 6.17 5.77 -2.91 -0.02 6.15 16 39 H 0.43 5.12 9.10 -74.05 -0.67 4.45 16 Total: -1.00 -77.87 337.80 3.52 -74.35 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: -0.19 Total: 33.73 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 3.62 Total: -16.80 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -1.56 Total: -71.34 kcal Atomic # 8 Polarization: -61.93 SS G_CDS: -0.37 Total: -62.30 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -77.87 3.52 -74.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262147549.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.362 kcal (2) G-P(sol) polarization free energy of solvation -77.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds