Wall clock time and date at job start Tue Mar 31 2020 06:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47097 * 2 1 4 4 C 1.52991 * 109.47220 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47808 * 55.00160 * 4 3 2 6 6 N 1.46500 * 109.46963 * 294.99867 * 4 3 2 7 7 C 1.34780 * 120.00182 * 155.00261 * 6 4 3 8 8 O 1.21549 * 119.99748 * 359.97438 * 7 6 4 9 9 C 1.47881 * 120.00384 * 180.02562 * 7 6 4 10 10 C 1.39924 * 120.02390 * 359.72014 * 9 7 6 11 11 C 1.38333 * 120.36040 * 179.71592 * 10 9 7 12 12 C 1.37749 * 120.40683 * 0.56408 * 11 10 9 13 13 C 1.40752 * 120.04523 * 359.71691 * 12 11 10 14 14 C 1.41438 * 120.18020 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00247 * 24.43508 * 14 13 12 16 16 C 1.39943 * 119.99695 * 204.44054 * 14 13 12 17 17 N 1.30822 * 120.00007 * 17.88209 * 16 14 13 18 18 Si 1.86796 * 119.99514 * 197.87979 * 16 14 13 19 19 H 1.48501 * 109.47185 * 90.00007 * 18 16 14 20 20 H 1.48500 * 109.47033 * 209.99808 * 18 16 14 21 21 H 1.48497 * 109.47512 * 329.99944 * 18 16 14 22 22 C 1.38997 * 120.03121 * 179.97438 * 9 7 6 23 23 C 1.50706 * 109.47255 * 175.00080 * 4 3 2 24 24 O 1.20828 * 119.99939 * 119.99808 * 23 4 3 25 25 O 1.34222 * 120.00118 * 299.99414 * 23 4 3 26 26 H 1.08998 * 109.47333 * 300.00342 * 1 2 3 27 27 H 1.09007 * 109.47576 * 60.00180 * 1 2 3 28 28 H 1.08998 * 109.46773 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46998 * 240.00041 * 2 1 3 30 30 H 1.08997 * 109.47486 * 119.99887 * 2 1 3 31 31 H 1.08998 * 109.47308 * 59.99642 * 3 2 1 32 32 H 1.09009 * 109.47272 * 300.00254 * 3 2 1 33 33 H 0.97001 * 120.00382 * 334.99824 * 6 4 3 34 34 H 1.07998 * 119.81803 * 359.97438 * 10 9 7 35 35 H 1.07993 * 119.79272 * 180.26051 * 11 10 9 36 36 H 1.08003 * 119.97697 * 179.74041 * 12 11 10 37 37 H 0.97001 * 119.99565 * 180.02562 * 17 16 14 38 38 H 1.08007 * 120.19420 * 359.97438 * 22 9 7 39 39 H 0.96694 * 117.00468 * 179.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9330 0.8533 -0.8427 6 7 4.0587 0.8587 1.2509 7 6 5.2807 0.2921 1.2982 8 8 5.9771 0.2653 0.3022 9 6 5.7740 -0.2978 2.5613 10 6 4.9748 -0.2629 3.7094 11 6 5.4269 -0.8178 4.8931 12 6 6.6733 -1.4006 4.9586 13 6 7.4938 -1.4400 3.8157 14 6 8.7738 -2.0383 3.8796 15 1 8.9822 -2.7893 4.6272 16 6 9.7704 -1.6569 2.9741 17 7 9.6576 -0.5343 2.3119 18 14 11.2614 -2.7509 2.7111 19 1 10.9819 -3.7137 1.6156 20 1 12.4321 -1.9129 2.3470 21 1 11.5557 -3.4958 3.9616 22 6 7.0340 -0.8826 2.6106 23 6 4.0722 2.8580 -0.1245 24 8 4.7672 3.3305 0.7437 25 8 3.7476 3.5938 -1.1991 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 3.5029 0.8798 2.0456 34 1 3.9980 0.1961 3.6699 35 1 4.8008 -0.7894 5.7726 36 1 7.0210 -1.8281 5.8875 37 1 10.3482 -0.2702 1.6841 38 1 7.6557 -0.9085 1.7278 39 1 4.0929 4.4962 -1.2339 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262147550.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:39 Heat of formation + Delta-G solvation = -147.712449 kcal Electronic energy + Delta-G solvation = -22946.539770 eV Core-core repulsion = 19431.145422 eV Total energy + Delta-G solvation = -3515.394348 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.82419 -40.58273 -38.88625 -37.35299 -37.09819 -35.64062 -34.43308 -32.26001 -31.31259 -30.33879 -27.22138 -26.13582 -24.61991 -22.86825 -22.41747 -21.90732 -21.35198 -19.60991 -19.16071 -18.18920 -17.73056 -17.44349 -16.78802 -16.63264 -16.39466 -15.81585 -15.55060 -15.41205 -15.02727 -14.54433 -14.36642 -14.32309 -14.26900 -13.49930 -13.41999 -12.98401 -12.83097 -12.81066 -12.65638 -12.53472 -12.37055 -12.19081 -12.05723 -11.92659 -11.65477 -11.53509 -11.51630 -11.09644 -10.89552 -10.40474 -9.50916 -9.40155 -8.67591 -6.39556 0.32961 0.99668 1.09648 1.35535 1.46903 1.50468 1.66833 2.09158 2.18476 2.34372 2.78000 3.53751 3.68528 3.86314 4.01374 4.05000 4.29514 4.40272 4.41807 4.57389 4.63288 4.76722 4.87902 4.89863 5.01500 5.07273 5.17095 5.20631 5.29683 5.30876 5.36787 5.49982 5.51216 5.53552 5.83847 5.90432 6.03739 6.26555 6.42044 6.61797 6.86489 6.89514 6.93380 7.18595 8.29163 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018475 B = 0.004189 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.199321 B = 6681.961174 C = 7360.992355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C -0.106 4.106 4 C 0.154 3.846 5 H 0.118 0.882 6 N -0.694 5.694 7 C 0.570 3.430 8 O -0.584 6.584 9 C -0.139 4.139 10 C -0.196 4.196 11 C -0.095 4.095 12 C -0.216 4.216 13 C 0.067 3.933 14 C -0.498 4.498 15 H 0.086 0.914 16 C 0.029 3.971 17 N -0.827 5.827 18 Si 0.985 3.015 19 H -0.265 1.265 20 H -0.271 1.271 21 H -0.249 1.249 22 C -0.131 4.131 23 C 0.466 3.534 24 O -0.547 6.547 25 O -0.502 6.502 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.418 0.582 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.110 0.890 37 H 0.286 0.714 38 H 0.098 0.902 39 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.038 3.812 -4.842 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.144 4.144 4 C 0.047 3.953 5 H 0.135 0.865 6 N -0.348 5.348 7 C 0.361 3.639 8 O -0.465 6.465 9 C -0.142 4.142 10 C -0.216 4.216 11 C -0.113 4.113 12 C -0.235 4.235 13 C 0.065 3.935 14 C -0.527 4.527 15 H 0.104 0.896 16 C -0.186 4.186 17 N -0.453 5.453 18 Si 0.805 3.195 19 H -0.190 1.190 20 H -0.196 1.196 21 H -0.172 1.172 22 C -0.152 4.152 23 C 0.307 3.693 24 O -0.437 6.437 25 O -0.315 6.315 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.257 0.743 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.128 0.872 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -16.416 3.711 -5.461 17.695 hybrid contribution 1.366 0.477 0.087 1.450 sum -15.050 4.188 -5.374 16.520 Atomic orbital electron populations 1.21727 0.93806 1.02271 1.02649 1.21549 0.97321 0.94902 1.02631 1.21892 0.86816 0.99808 1.05891 1.20709 0.98213 0.86659 0.89738 0.86471 1.45507 1.17298 1.58302 1.13705 1.18766 0.80799 0.76261 0.88120 1.90668 1.57423 1.60476 1.37920 1.19717 0.96643 1.04299 0.93571 1.20851 1.00260 1.08000 0.92466 1.20929 0.95401 0.97295 0.97649 1.21425 0.97108 1.07907 0.97096 1.17944 0.93714 0.90873 0.90980 1.19890 0.95902 1.21260 1.15621 0.89617 1.26891 1.03173 0.95287 0.93245 1.69911 1.34893 1.19855 1.20646 0.85166 0.75918 0.78427 0.79998 1.18967 1.19561 1.17210 1.21449 0.94014 1.01396 0.98302 1.24445 0.76436 0.89819 0.78568 1.90761 1.36838 1.73289 1.42814 1.84452 1.71719 1.32031 1.43290 0.91946 0.91682 0.92426 0.91856 0.92175 0.89266 0.86933 0.74282 0.84602 0.84174 0.87206 0.90381 0.88397 0.71188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.99 16 2 C -0.13 -1.96 5.82 30.59 0.18 -1.78 16 3 C -0.11 -1.66 4.72 30.59 0.14 -1.52 16 4 C 0.15 4.01 2.48 44.24 0.11 4.12 16 5 H 0.12 3.31 7.58 -2.39 -0.02 3.29 16 6 N -0.69 -22.17 4.01 -448.94 -1.80 -23.97 16 7 C 0.57 25.61 7.60 86.80 0.66 26.27 16 8 O -0.58 -30.81 16.00 -3.87 -0.06 -30.88 16 9 C -0.14 -6.75 5.87 -20.13 -0.12 -6.87 16 10 C -0.20 -7.84 9.55 22.70 0.22 -7.62 16 11 C -0.09 -3.79 10.01 22.18 0.22 -3.57 16 12 C -0.22 -10.19 9.78 22.77 0.22 -9.97 16 13 C 0.07 3.71 5.57 -21.32 -0.12 3.59 16 14 C -0.50 -27.50 9.05 23.47 0.21 -27.29 16 15 H 0.09 4.45 7.91 -2.91 -0.02 4.42 16 16 C 0.03 1.53 5.14 85.26 0.44 1.97 16 17 N -0.83 -47.53 10.96 21.83 0.24 -47.29 16 18 Si 0.98 40.31 29.59 68.60 2.03 42.34 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 20 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 21 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 22 C -0.13 -7.46 8.24 23.01 0.19 -7.27 16 23 C 0.47 13.46 7.66 71.24 0.55 14.00 16 24 O -0.55 -21.14 17.08 21.96 0.38 -20.77 16 25 O -0.50 -9.98 13.23 -51.34 -0.68 -10.66 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.07 7.75 -2.39 -0.02 1.05 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.11 1.35 8.00 -2.38 -0.02 1.33 16 33 H 0.42 10.92 6.62 -92.71 -0.61 10.31 16 34 H 0.14 4.10 6.38 -2.91 -0.02 4.08 16 35 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 36 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 37 H 0.29 15.17 8.30 -92.71 -0.77 14.40 16 38 H 0.10 6.21 5.74 -2.91 -0.02 6.19 16 39 H 0.43 5.13 9.10 -74.06 -0.67 4.46 16 Total: -1.00 -77.74 337.78 3.52 -74.22 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: -0.19 Total: 33.92 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 3.62 Total: -16.91 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -1.56 Total: -71.26 kcal Atomic # 8 Polarization: -61.94 SS G_CDS: -0.37 Total: -62.30 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -77.74 3.52 -74.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262147550.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.493 kcal (2) G-P(sol) polarization free energy of solvation -77.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds