Wall clock time and date at job start Tue Mar 31 2020 06:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47308 * 2 1 4 4 C 1.53002 * 109.47417 * 300.00654 * 3 2 1 5 5 N 1.46493 * 109.47282 * 180.02562 * 3 2 1 6 6 C 1.34785 * 120.00028 * 180.02562 * 5 3 2 7 7 O 1.21579 * 119.99991 * 359.97438 * 6 5 3 8 8 C 1.47642 * 119.99830 * 179.97438 * 6 5 3 9 9 C 1.40009 * 119.89557 * 359.72517 * 8 6 5 10 10 C 1.36325 * 120.10682 * 179.75937 * 9 8 6 11 11 C 1.40889 * 119.88775 * 0.51324 * 10 9 8 12 12 C 1.41106 * 120.10403 * 179.71846 * 11 10 9 13 13 H 1.07997 * 120.00560 * 204.64629 * 12 11 10 14 14 C 1.40232 * 119.99895 * 24.64816 * 12 11 10 15 15 N 1.30650 * 119.99972 * 17.87429 * 14 12 11 16 16 Si 1.86795 * 119.99910 * 197.87813 * 14 12 11 17 17 H 1.48495 * 109.47266 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47280 * 120.00041 * 16 14 12 19 19 H 1.48509 * 109.47071 * 239.99640 * 16 14 12 20 20 C 1.40893 * 119.79531 * 359.73877 * 11 10 9 21 21 C 1.36321 * 119.89028 * 359.97438 * 20 11 10 22 22 C 1.50702 * 109.46921 * 60.00326 * 3 2 1 23 23 O 1.20823 * 120.00406 * 265.00287 * 22 3 2 24 24 O 1.34230 * 119.99975 * 84.99650 * 22 3 2 25 25 H 1.08997 * 109.47141 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46434 * 299.99480 * 1 2 3 27 27 H 1.08991 * 109.47300 * 59.99216 * 1 2 3 28 28 H 1.08996 * 109.47755 * 120.00774 * 2 1 3 29 29 H 1.09003 * 109.46434 * 240.00519 * 2 1 3 30 30 H 1.09005 * 109.47094 * 59.99542 * 4 3 2 31 31 H 1.08996 * 109.47312 * 179.97438 * 4 3 2 32 32 H 1.08994 * 109.46917 * 300.00135 * 4 3 2 33 33 H 0.96997 * 120.00343 * 0.02562 * 5 3 2 34 34 H 1.08006 * 119.94852 * 0.02562 * 9 8 6 35 35 H 1.08000 * 120.05643 * 180.23113 * 10 9 8 36 36 H 0.96999 * 120.00108 * 180.02562 * 15 14 12 37 37 H 1.07994 * 120.05594 * 179.97438 * 20 11 10 38 38 H 1.07995 * 119.94736 * 179.97438 * 21 20 11 39 39 H 0.96699 * 117.00233 * 179.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1638 -1.2492 5 7 3.5050 1.4425 -0.0006 6 6 4.1789 2.6097 -0.0002 7 8 3.5710 3.6626 0.0002 8 6 5.6553 2.6097 -0.0003 9 6 6.3531 1.3959 0.0051 10 6 7.7164 1.3908 0.0001 11 6 8.4230 2.6096 0.0005 12 6 9.8340 2.6097 0.0014 13 1 10.3739 3.4597 0.3917 14 6 10.5355 1.5059 -0.5047 15 7 9.9300 0.6471 -1.2811 16 14 12.3356 1.2633 -0.0685 17 1 12.7830 2.3668 0.8187 18 1 12.5046 -0.0351 0.6321 19 1 13.1504 1.2655 -1.3100 20 6 7.7163 3.8285 0.0005 21 6 6.3532 3.8235 -0.0005 22 6 1.5378 2.1528 1.2305 23 8 0.5283 2.8145 1.1764 24 8 2.2119 2.0504 2.3868 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8898 28 1 1.8935 -0.5139 0.8898 29 1 1.8932 -0.5138 -0.8901 30 1 0.4399 2.1638 -1.2491 31 1 1.8930 3.1916 -1.2489 32 1 1.8932 1.6501 -2.1391 33 1 3.9900 0.6025 -0.0013 34 1 5.8105 0.4620 0.0088 35 1 8.2538 0.4540 0.0005 36 1 10.4151 -0.1166 -1.6309 37 1 8.2537 4.7653 0.0012 38 1 5.8106 4.7573 -0.0001 39 1 1.8512 2.5241 3.1487 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000262209379.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:52 Heat of formation + Delta-G solvation = -120.827521 kcal Electronic energy + Delta-G solvation = -23206.694535 eV Core-core repulsion = 19692.466006 eV Total energy + Delta-G solvation = -3514.228530 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.76872 -38.91814 -37.30925 -36.30012 -35.67634 -33.91362 -32.60336 -30.35407 -29.47803 -28.87456 -26.18195 -25.25663 -23.53677 -22.05615 -21.01615 -19.92363 -19.51568 -17.96722 -17.56025 -17.20424 -16.62096 -15.61948 -15.45532 -15.15870 -14.38763 -14.24605 -14.03292 -13.83290 -13.28197 -13.09043 -13.01216 -12.70841 -12.29280 -12.16273 -12.09237 -11.90729 -11.79895 -11.57389 -11.40939 -11.29865 -11.28914 -10.98522 -10.95369 -10.69075 -10.37894 -10.06184 -9.59838 -9.38153 -8.99202 -8.82200 -7.75543 -7.58256 -7.07321 -4.63733 2.16205 2.35011 2.87176 2.93138 2.98714 3.00837 3.12163 3.53686 3.71557 3.83015 4.48809 4.52236 4.73185 5.01420 5.17010 5.38124 5.41819 5.54200 5.68682 5.73933 5.78691 5.87853 5.93970 6.01716 6.09243 6.28423 6.41520 6.65149 6.72521 6.75850 6.79458 6.99985 7.09727 7.40116 7.60073 7.74406 7.82869 8.03477 8.05930 8.13095 8.36607 8.59800 8.71793 8.96601 9.84600 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.030957 B = 0.003558 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.254812 B = 7867.592346 C = 8238.065197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.126 4.126 3 C 0.194 3.806 4 C -0.157 4.157 5 N -0.729 5.729 6 C 0.577 3.423 7 O -0.568 6.568 8 C -0.283 4.283 9 C -0.061 4.061 10 C -0.178 4.178 11 C 0.129 3.871 12 C -0.441 4.441 13 H 0.085 0.915 14 C 0.074 3.926 15 N -0.770 5.770 16 Si 0.913 3.087 17 H -0.257 1.257 18 H -0.269 1.269 19 H -0.271 1.271 20 C -0.239 4.239 21 C -0.020 4.020 22 C 0.490 3.510 23 O -0.516 6.516 24 O -0.506 6.506 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.403 0.597 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.286 0.714 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.576 -5.803 1.971 11.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.163 4.163 3 C 0.105 3.895 4 C -0.215 4.215 5 N -0.384 5.384 6 C 0.373 3.627 7 O -0.450 6.450 8 C -0.288 4.288 9 C -0.080 4.080 10 C -0.197 4.197 11 C 0.126 3.874 12 C -0.469 4.469 13 H 0.104 0.896 14 C -0.147 4.147 15 N -0.394 5.394 16 Si 0.736 3.264 17 H -0.180 1.180 18 H -0.194 1.194 19 H -0.197 1.197 20 C -0.258 4.258 21 C -0.040 4.040 22 C 0.331 3.669 23 O -0.404 6.404 24 O -0.316 6.316 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.240 0.760 34 H 0.107 0.893 35 H 0.138 0.862 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -10.080 -5.300 1.467 11.483 hybrid contribution 0.845 -0.308 0.621 1.093 sum -9.235 -5.609 2.088 11.005 Atomic orbital electron populations 1.21867 0.94058 1.02302 1.03112 1.21807 0.97442 0.92751 1.04342 1.20073 0.82751 0.96035 0.90607 1.22205 1.01799 1.03116 0.94344 1.45992 1.03758 1.10144 1.78502 1.18632 0.88368 0.82184 0.73514 1.90634 1.70374 1.31463 1.52540 1.18804 0.89399 0.94638 1.25925 1.20464 0.94858 0.94555 0.98127 1.20974 0.92393 0.98727 1.07644 1.17797 0.93291 0.91116 0.85230 1.19899 0.91714 1.01891 1.33360 0.89644 1.26106 1.01657 0.94516 0.92416 1.69749 1.39062 1.10310 1.20235 0.86170 0.80931 0.79682 0.79574 1.18043 1.19352 1.19651 1.20715 0.93172 0.97194 1.14738 1.20355 0.93851 0.95679 0.94090 1.23736 0.80802 0.77884 0.84506 1.90656 1.25866 1.38612 1.85241 1.84592 1.56326 1.69981 1.20747 0.91747 0.92445 0.91432 0.90287 0.89250 0.90720 0.89513 0.91106 0.76020 0.89292 0.86171 0.90247 0.88377 0.88139 0.73897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.25 37.16 0.34 -1.13 16 2 C -0.13 -1.30 5.09 -26.73 -0.14 -1.43 16 3 C 0.19 2.80 0.80 -132.97 -0.11 2.69 16 4 C -0.16 -2.29 7.58 37.16 0.28 -2.00 16 5 N -0.73 -11.80 4.82 -49.68 -0.24 -12.04 16 6 C 0.58 11.92 7.09 -12.42 -0.09 11.83 16 7 O -0.57 -13.13 13.53 5.30 0.07 -13.06 16 8 C -0.28 -6.32 5.89 -104.73 -0.62 -6.94 16 9 C -0.06 -1.31 9.47 -39.61 -0.38 -1.68 16 10 C -0.18 -4.26 8.64 -39.27 -0.34 -4.60 16 11 C 0.13 3.23 5.58 -106.80 -0.60 2.63 16 12 C -0.44 -10.79 9.04 -37.75 -0.34 -11.14 16 13 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 14 C 0.07 1.70 5.14 -17.31 -0.09 1.61 16 15 N -0.77 -18.04 10.95 55.56 0.61 -17.43 16 16 Si 0.91 16.93 29.60 -169.99 -5.03 11.90 16 17 H -0.26 -4.76 7.11 56.52 0.40 -4.35 16 18 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 19 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 20 C -0.24 -5.70 9.73 -39.27 -0.38 -6.08 16 21 C -0.02 -0.48 9.52 -39.61 -0.38 -0.85 16 22 C 0.49 7.91 4.79 36.01 0.17 8.08 16 23 O -0.52 -9.24 16.22 -18.75 -0.30 -9.54 16 24 O -0.51 -7.43 13.03 -39.26 -0.51 -7.94 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.62 6.82 -51.93 -0.35 0.27 16 27 H 0.07 0.63 6.43 -51.93 -0.33 0.29 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.98 6.16 -51.93 -0.32 0.66 16 31 H 0.09 1.57 6.16 -51.93 -0.32 1.25 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.40 5.70 6.47 -40.82 -0.26 5.44 16 34 H 0.09 1.59 6.37 -52.48 -0.33 1.26 16 35 H 0.12 2.91 6.16 -52.49 -0.32 2.58 16 36 H 0.29 6.00 8.29 -40.82 -0.34 5.66 16 37 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 38 H 0.10 2.28 7.63 -52.49 -0.40 1.87 16 39 H 0.40 4.18 9.10 45.56 0.41 4.59 16 LS Contribution 325.23 15.07 4.90 4.90 Total: -1.00 -30.15 325.23 -7.05 -37.20 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -3.90 Total: 15.04 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -2.65 Total: -9.02 kcal Atomic # 7 Polarization: -29.85 SS G_CDS: 0.37 Total: -29.48 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.74 Total: -30.55 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.15 -7.05 -37.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262209379.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.625 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds