Wall clock time and date at job start Tue Mar 31 2020 06:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47308 * 2 1 4 4 C 1.53002 * 109.47417 * 300.00654 * 3 2 1 5 5 N 1.46493 * 109.47282 * 180.02562 * 3 2 1 6 6 C 1.34785 * 120.00028 * 180.02562 * 5 3 2 7 7 O 1.21579 * 119.99991 * 359.97438 * 6 5 3 8 8 C 1.47642 * 119.99830 * 179.97438 * 6 5 3 9 9 C 1.40009 * 119.89557 * 359.72517 * 8 6 5 10 10 C 1.36325 * 120.10682 * 179.75937 * 9 8 6 11 11 C 1.40889 * 119.88775 * 0.51324 * 10 9 8 12 12 C 1.41106 * 120.10403 * 179.71846 * 11 10 9 13 13 H 1.07997 * 120.00560 * 204.64629 * 12 11 10 14 14 C 1.40232 * 119.99895 * 24.64816 * 12 11 10 15 15 N 1.30650 * 119.99972 * 17.87429 * 14 12 11 16 16 Si 1.86795 * 119.99910 * 197.87813 * 14 12 11 17 17 H 1.48495 * 109.47266 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47280 * 120.00041 * 16 14 12 19 19 H 1.48509 * 109.47071 * 239.99640 * 16 14 12 20 20 C 1.40893 * 119.79531 * 359.73877 * 11 10 9 21 21 C 1.36321 * 119.89028 * 359.97438 * 20 11 10 22 22 C 1.50702 * 109.46921 * 60.00326 * 3 2 1 23 23 O 1.20823 * 120.00406 * 265.00287 * 22 3 2 24 24 O 1.34230 * 119.99975 * 84.99650 * 22 3 2 25 25 H 1.08997 * 109.47141 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46434 * 299.99480 * 1 2 3 27 27 H 1.08991 * 109.47300 * 59.99216 * 1 2 3 28 28 H 1.08996 * 109.47755 * 120.00774 * 2 1 3 29 29 H 1.09003 * 109.46434 * 240.00519 * 2 1 3 30 30 H 1.09005 * 109.47094 * 59.99542 * 4 3 2 31 31 H 1.08996 * 109.47312 * 179.97438 * 4 3 2 32 32 H 1.08994 * 109.46917 * 300.00135 * 4 3 2 33 33 H 0.96997 * 120.00343 * 0.02562 * 5 3 2 34 34 H 1.08006 * 119.94852 * 0.02562 * 9 8 6 35 35 H 1.08000 * 120.05643 * 180.23113 * 10 9 8 36 36 H 0.96999 * 120.00108 * 180.02562 * 15 14 12 37 37 H 1.07994 * 120.05594 * 179.97438 * 20 11 10 38 38 H 1.07995 * 119.94736 * 179.97438 * 21 20 11 39 39 H 0.96699 * 117.00233 * 179.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1638 -1.2492 5 7 3.5050 1.4425 -0.0006 6 6 4.1789 2.6097 -0.0002 7 8 3.5710 3.6626 0.0002 8 6 5.6553 2.6097 -0.0003 9 6 6.3531 1.3959 0.0051 10 6 7.7164 1.3908 0.0001 11 6 8.4230 2.6096 0.0005 12 6 9.8340 2.6097 0.0014 13 1 10.3739 3.4597 0.3917 14 6 10.5355 1.5059 -0.5047 15 7 9.9300 0.6471 -1.2811 16 14 12.3356 1.2633 -0.0685 17 1 12.7830 2.3668 0.8187 18 1 12.5046 -0.0351 0.6321 19 1 13.1504 1.2655 -1.3100 20 6 7.7163 3.8285 0.0005 21 6 6.3532 3.8235 -0.0005 22 6 1.5378 2.1528 1.2305 23 8 0.5283 2.8145 1.1764 24 8 2.2119 2.0504 2.3868 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8898 28 1 1.8935 -0.5139 0.8898 29 1 1.8932 -0.5138 -0.8901 30 1 0.4399 2.1638 -1.2491 31 1 1.8930 3.1916 -1.2489 32 1 1.8932 1.6501 -2.1391 33 1 3.9900 0.6025 -0.0013 34 1 5.8105 0.4620 0.0088 35 1 8.2538 0.4540 0.0005 36 1 10.4151 -0.1166 -1.6309 37 1 8.2537 4.7653 0.0012 38 1 5.8106 4.7573 -0.0001 39 1 1.8512 2.5241 3.1487 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262209379.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:51 Heat of formation + Delta-G solvation = -140.026721 kcal Electronic energy + Delta-G solvation = -23207.527075 eV Core-core repulsion = 19692.466006 eV Total energy + Delta-G solvation = -3515.061069 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.04788 -40.46853 -38.97640 -37.55254 -36.97520 -35.66698 -33.90030 -31.95087 -31.28222 -30.08320 -27.77320 -26.55376 -24.62888 -23.63981 -22.79775 -21.29782 -20.89734 -19.38960 -19.22694 -18.61564 -17.98328 -17.19080 -16.80798 -16.30608 -15.88100 -15.72913 -15.66430 -15.07448 -14.96484 -14.53051 -14.22551 -14.06930 -13.77720 -13.70119 -13.25137 -13.15124 -13.04811 -12.96100 -12.81308 -12.65205 -12.57832 -12.47091 -12.36240 -11.81800 -11.74405 -11.56911 -11.35838 -11.10526 -10.64470 -10.25062 -9.56017 -9.40707 -8.78751 -6.47418 0.43523 1.10313 1.16800 1.39636 1.43176 1.56393 1.92954 2.13941 2.18830 2.29424 2.79583 3.52604 3.66196 3.74441 4.16076 4.17871 4.29421 4.33797 4.44920 4.46275 4.59444 4.71301 4.82310 4.93774 4.99578 5.02027 5.04330 5.12904 5.18431 5.30694 5.36476 5.42344 5.55201 5.60036 5.82802 5.95218 6.00650 6.24090 6.55136 6.64872 6.78361 6.90040 6.91512 7.38707 8.16606 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.030957 B = 0.003558 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.254812 B = 7867.592346 C = 8238.065197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C 0.187 3.813 4 C -0.154 4.154 5 N -0.710 5.710 6 C 0.579 3.421 7 O -0.597 6.597 8 C -0.291 4.291 9 C -0.050 4.050 10 C -0.197 4.197 11 C 0.102 3.898 12 C -0.474 4.474 13 H 0.083 0.917 14 C 0.040 3.960 15 N -0.796 5.796 16 Si 0.986 3.014 17 H -0.259 1.259 18 H -0.259 1.259 19 H -0.264 1.264 20 C -0.254 4.254 21 C -0.033 4.033 22 C 0.485 3.515 23 O -0.541 6.541 24 O -0.511 6.511 25 H 0.089 0.911 26 H 0.038 0.962 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.416 0.584 34 H 0.128 0.872 35 H 0.115 0.885 36 H 0.298 0.702 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.720 -8.130 1.896 12.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C 0.099 3.901 4 C -0.212 4.212 5 N -0.365 5.365 6 C 0.373 3.627 7 O -0.480 6.480 8 C -0.296 4.296 9 C -0.069 4.069 10 C -0.217 4.217 11 C 0.099 3.901 12 C -0.501 4.501 13 H 0.101 0.899 14 C -0.179 4.179 15 N -0.419 5.419 16 Si 0.806 3.194 17 H -0.183 1.183 18 H -0.183 1.183 19 H -0.189 1.189 20 C -0.274 4.274 21 C -0.052 4.052 22 C 0.327 3.673 23 O -0.430 6.430 24 O -0.323 6.323 25 H 0.108 0.892 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.133 0.867 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.255 0.745 34 H 0.146 0.854 35 H 0.133 0.867 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -10.246 -7.660 1.403 12.869 hybrid contribution 0.775 0.437 0.653 1.103 sum -9.472 -7.222 2.056 12.087 Atomic orbital electron populations 1.21870 0.93325 1.03719 1.02245 1.21888 0.97922 0.89685 1.06176 1.20416 0.81177 0.98699 0.89769 1.22178 1.02652 1.01023 0.95361 1.45771 1.04821 1.09207 1.76694 1.18404 0.87748 0.83013 0.73501 1.90633 1.70710 1.32895 1.53812 1.19095 0.90757 0.94564 1.25141 1.20744 0.94197 0.95845 0.96100 1.21020 0.93413 0.98106 1.09114 1.18137 0.94097 0.91871 0.85984 1.20141 0.91979 1.03142 1.34826 0.89875 1.26886 1.05836 0.93590 0.91632 1.69755 1.41024 1.10774 1.20340 0.85087 0.75288 0.79664 0.79357 1.18252 1.18317 1.18875 1.20835 0.93594 0.97349 1.15579 1.20487 0.93813 0.96427 0.94464 1.24116 0.80516 0.77478 0.85206 1.90642 1.27024 1.39646 1.85714 1.84551 1.56303 1.70188 1.21244 0.89173 0.94256 0.91395 0.89127 0.86745 0.89435 0.93390 0.89106 0.74546 0.85388 0.86680 0.89117 0.88071 0.88269 0.71987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.25 71.98 0.67 -1.78 16 2 C -0.12 -2.03 5.09 30.59 0.16 -1.88 16 3 C 0.19 5.01 0.80 2.86 0.00 5.01 16 4 C -0.15 -4.28 7.58 71.98 0.55 -3.73 16 5 N -0.71 -21.46 4.82 -429.36 -2.07 -23.53 16 6 C 0.58 23.43 7.09 86.73 0.61 24.04 16 7 O -0.60 -27.71 13.53 -3.97 -0.05 -27.76 16 8 C -0.29 -12.89 5.89 -19.93 -0.12 -13.01 16 9 C -0.05 -2.09 9.47 22.25 0.21 -1.88 16 10 C -0.20 -9.44 8.64 22.47 0.19 -9.24 16 11 C 0.10 5.23 5.58 -21.28 -0.12 5.11 16 12 C -0.47 -23.62 9.04 23.46 0.21 -23.40 16 13 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 14 C 0.04 1.81 5.14 85.35 0.44 2.25 16 15 N -0.80 -36.96 10.95 21.87 0.24 -36.72 16 16 Si 0.99 34.07 29.60 68.60 2.03 36.10 16 17 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 18 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 19 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 20 C -0.25 -12.52 9.73 22.47 0.22 -12.30 16 21 C -0.03 -1.56 9.52 22.25 0.21 -1.34 16 22 C 0.48 15.10 4.79 71.24 0.34 15.44 16 23 O -0.54 -19.12 16.22 21.97 0.36 -18.77 16 24 O -0.51 -14.33 13.03 -51.42 -0.67 -15.00 16 25 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.04 0.77 6.82 -2.39 -0.02 0.76 16 27 H 0.07 1.07 6.43 -2.39 -0.02 1.06 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.09 2.17 6.16 -2.38 -0.01 2.15 16 31 H 0.05 1.72 6.16 -2.39 -0.01 1.71 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.42 10.37 6.47 -92.71 -0.60 9.77 16 34 H 0.13 4.21 6.37 -2.91 -0.02 4.19 16 35 H 0.12 5.56 6.16 -2.91 -0.02 5.54 16 36 H 0.30 12.18 8.29 -92.71 -0.77 11.41 16 37 H 0.10 4.73 8.06 -2.91 -0.02 4.70 16 38 H 0.10 4.64 7.63 -2.91 -0.02 4.62 16 39 H 0.42 8.29 9.10 -74.06 -0.67 7.61 16 Total: -1.00 -66.37 325.23 3.24 -63.12 By element: Atomic # 1 Polarization: 39.44 SS G_CDS: -0.17 Total: 39.27 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 3.58 Total: -16.71 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -1.83 Total: -60.25 kcal Atomic # 8 Polarization: -61.16 SS G_CDS: -0.37 Total: -61.53 kcal Atomic # 14 Polarization: 34.07 SS G_CDS: 2.03 Total: 36.10 kcal Total: -66.37 3.24 -63.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262209379.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.902 kcal (2) G-P(sol) polarization free energy of solvation -66.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds