Wall clock time and date at job start Tue Mar 31 2020 06:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47324 * 2 1 4 4 C 1.52999 * 109.46717 * 60.00318 * 3 2 1 5 5 N 1.46501 * 109.46981 * 180.02562 * 3 2 1 6 6 C 1.34771 * 119.99636 * 180.02562 * 5 3 2 7 7 O 1.21592 * 120.00386 * 359.97438 * 6 5 3 8 8 C 1.47645 * 120.00113 * 180.02562 * 6 5 3 9 9 C 1.40016 * 119.89252 * 359.71518 * 8 6 5 10 10 C 1.36316 * 120.10714 * 179.71535 * 9 8 6 11 11 C 1.40888 * 119.88956 * 0.56771 * 10 9 8 12 12 C 1.41111 * 120.10467 * 179.68996 * 11 10 9 13 13 H 1.07998 * 120.00173 * 204.64973 * 12 11 10 14 14 C 1.40230 * 119.99772 * 24.65401 * 12 11 10 15 15 N 1.30645 * 119.99785 * 17.86167 * 14 12 11 16 16 Si 1.86794 * 120.00113 * 197.86268 * 14 12 11 17 17 H 1.48500 * 109.46997 * 59.99881 * 16 14 12 18 18 H 1.48501 * 109.47584 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47076 * 300.00343 * 16 14 12 20 20 C 1.40889 * 119.79666 * 359.71007 * 11 10 9 21 21 C 1.36320 * 119.88553 * 0.02562 * 20 11 10 22 22 C 1.50697 * 109.47381 * 300.00511 * 3 2 1 23 23 O 1.20825 * 120.00036 * 94.99771 * 22 3 2 24 24 O 1.34227 * 120.00262 * 275.00127 * 22 3 2 25 25 H 1.08994 * 109.47379 * 59.98957 * 1 2 3 26 26 H 1.08999 * 109.47041 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46657 * 299.99719 * 1 2 3 28 28 H 1.09008 * 109.46657 * 240.00281 * 2 1 3 29 29 H 1.09001 * 109.47132 * 120.00812 * 2 1 3 30 30 H 1.09000 * 109.47129 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47418 * 299.99762 * 4 3 2 32 32 H 1.09003 * 109.47063 * 60.00461 * 4 3 2 33 33 H 0.96994 * 120.00230 * 0.02562 * 5 3 2 34 34 H 1.08000 * 119.94532 * 0.02562 * 9 8 6 35 35 H 1.07995 * 120.05570 * 180.25331 * 10 9 8 36 36 H 0.97005 * 119.99884 * 180.02562 * 15 14 12 37 37 H 1.07993 * 120.05851 * 179.97438 * 20 11 10 38 38 H 1.08003 * 119.94114 * 179.97438 * 21 20 11 39 39 H 0.96688 * 117.00370 * 179.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1636 1.2493 5 7 3.5051 1.4424 -0.0006 6 6 4.1789 2.6096 -0.0002 7 8 3.5710 3.6626 0.0002 8 6 5.6554 2.6096 -0.0014 9 6 6.3532 1.3957 0.0031 10 6 7.7164 1.3906 -0.0039 11 6 8.4230 2.6095 -0.0035 12 6 9.8341 2.6095 -0.0040 13 1 10.3743 3.4593 0.3863 14 6 10.5350 1.5060 -0.5115 15 7 9.9286 0.6477 -1.2877 16 14 12.3356 1.2632 -0.0777 17 1 12.4766 1.1315 1.3947 18 1 12.8415 0.0315 -0.7350 19 1 13.1200 2.4334 -0.5473 20 6 7.7165 3.8284 -0.0021 21 6 6.3533 3.8233 -0.0006 22 6 1.5377 2.1530 -1.2304 23 8 0.5282 2.8147 -1.1760 24 8 2.2116 2.0507 -2.3867 25 1 -0.3634 0.5140 -0.8898 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5140 0.8899 30 1 1.8938 3.1912 1.2496 31 1 0.4401 2.1637 1.2494 32 1 1.8936 1.6498 2.1393 33 1 3.9900 0.6024 -0.0013 34 1 5.8106 0.4620 0.0070 35 1 8.2537 0.4539 -0.0045 36 1 10.4134 -0.1158 -1.6385 37 1 8.2539 4.7651 -0.0013 38 1 5.8108 4.7572 0.0009 39 1 1.8505 2.5239 -3.1486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000262209380.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:54 Heat of formation + Delta-G solvation = -120.796691 kcal Electronic energy + Delta-G solvation = -23214.518135 eV Core-core repulsion = 19700.290942 eV Total energy + Delta-G solvation = -3514.227193 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.76154 -38.91234 -37.30688 -36.29195 -35.66726 -33.91234 -32.60232 -30.35267 -29.47680 -28.87687 -26.18137 -25.25328 -23.53082 -22.05387 -21.01439 -19.91870 -19.51143 -17.95924 -17.55556 -17.19864 -16.61577 -15.61501 -15.45237 -15.15752 -14.40119 -14.23308 -14.02851 -13.82625 -13.28299 -13.08384 -12.99546 -12.72102 -12.28191 -12.14741 -12.08179 -11.94638 -11.80698 -11.56992 -11.36776 -11.28486 -11.28206 -11.03151 -10.95662 -10.68198 -10.36459 -10.08862 -9.58889 -9.37889 -8.98404 -8.82281 -7.75416 -7.58176 -7.06782 -4.63682 2.16962 2.36018 2.89680 2.92354 2.95992 3.00949 3.13304 3.53842 3.71309 3.83562 4.49201 4.52081 4.73234 5.01562 5.17044 5.38295 5.42060 5.54337 5.68656 5.73160 5.78744 5.87164 5.94078 6.01805 6.09291 6.28591 6.40885 6.66310 6.72815 6.76009 6.79564 7.00140 7.09968 7.39995 7.60224 7.74548 7.82570 8.03640 8.07187 8.13367 8.36424 8.59761 8.71935 8.96763 9.85071 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.030705 B = 0.003564 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.681429 B = 7853.676651 C = 8175.723965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.126 4.126 3 C 0.194 3.806 4 C -0.157 4.157 5 N -0.729 5.729 6 C 0.577 3.423 7 O -0.569 6.569 8 C -0.283 4.283 9 C -0.061 4.061 10 C -0.178 4.178 11 C 0.129 3.871 12 C -0.442 4.442 13 H 0.085 0.915 14 C 0.075 3.925 15 N -0.770 5.770 16 Si 0.914 3.086 17 H -0.260 1.260 18 H -0.275 1.275 19 H -0.262 1.262 20 C -0.239 4.239 21 C -0.020 4.020 22 C 0.490 3.510 23 O -0.517 6.517 24 O -0.506 6.506 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.403 0.597 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.287 0.713 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.558 -5.819 1.238 11.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.163 4.163 3 C 0.105 3.895 4 C -0.214 4.214 5 N -0.384 5.384 6 C 0.373 3.627 7 O -0.450 6.450 8 C -0.288 4.288 9 C -0.080 4.080 10 C -0.197 4.197 11 C 0.126 3.874 12 C -0.470 4.470 13 H 0.103 0.897 14 C -0.147 4.147 15 N -0.393 5.393 16 Si 0.738 3.262 17 H -0.185 1.185 18 H -0.200 1.200 19 H -0.186 1.186 20 C -0.258 4.258 21 C -0.040 4.040 22 C 0.331 3.669 23 O -0.404 6.404 24 O -0.316 6.316 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.240 0.760 34 H 0.107 0.893 35 H 0.138 0.862 36 H 0.099 0.901 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -10.063 -5.323 1.431 11.473 hybrid contribution 0.852 -0.290 -0.573 1.067 sum -9.210 -5.612 0.858 10.820 Atomic orbital electron populations 1.21868 0.94058 1.02300 1.03113 1.21809 0.97442 0.92755 1.04340 1.20074 0.82741 0.96033 0.90626 1.22203 1.01812 1.03107 0.94311 1.45988 1.03760 1.10142 1.78495 1.18633 0.88370 0.82186 0.73513 1.90637 1.70381 1.31455 1.52555 1.18803 0.89395 0.94638 1.25953 1.20462 0.94858 0.94553 0.98134 1.20970 0.92395 0.98722 1.07652 1.17785 0.93261 0.91119 0.85226 1.19842 0.91724 1.01928 1.33466 0.89710 1.26101 1.01646 0.94518 0.92415 1.69736 1.39208 1.10323 1.20064 0.86254 0.80941 0.78812 0.80241 1.18453 1.20025 1.18648 1.20712 0.93170 0.97185 1.14780 1.20354 0.93848 0.95679 0.94079 1.23730 0.80798 0.77887 0.84535 1.90655 1.25876 1.38638 1.85258 1.84594 1.56271 1.69990 1.20726 0.92424 0.91748 0.91452 0.90262 0.89277 0.89514 0.90708 0.91147 0.76020 0.89293 0.86174 0.90129 0.88382 0.88146 0.73867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.25 37.16 0.34 -1.13 16 2 C -0.13 -1.30 5.09 -26.73 -0.14 -1.43 16 3 C 0.19 2.80 0.80 -132.97 -0.11 2.69 16 4 C -0.16 -2.26 7.58 37.16 0.28 -1.97 16 5 N -0.73 -11.81 4.82 -49.68 -0.24 -12.05 16 6 C 0.58 11.92 7.09 -12.42 -0.09 11.83 16 7 O -0.57 -13.14 13.53 5.28 0.07 -13.07 16 8 C -0.28 -6.33 5.89 -104.73 -0.62 -6.95 16 9 C -0.06 -1.31 9.47 -39.61 -0.38 -1.68 16 10 C -0.18 -4.26 8.63 -39.27 -0.34 -4.60 16 11 C 0.13 3.24 5.58 -106.80 -0.60 2.64 16 12 C -0.44 -10.82 9.04 -37.74 -0.34 -11.16 16 13 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 14 C 0.07 1.71 5.14 -17.31 -0.09 1.62 16 15 N -0.77 -18.09 10.95 55.56 0.61 -17.48 16 16 Si 0.91 16.94 29.60 -169.99 -5.03 11.91 16 17 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 18 H -0.28 -4.96 7.11 56.52 0.40 -4.56 16 19 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 20 C -0.24 -5.71 9.73 -39.27 -0.38 -6.09 16 21 C -0.02 -0.47 9.52 -39.61 -0.38 -0.85 16 22 C 0.49 7.99 4.79 36.00 0.17 8.16 16 23 O -0.52 -9.31 16.22 -18.75 -0.30 -9.61 16 24 O -0.51 -7.61 13.02 -39.25 -0.51 -8.12 16 25 H 0.06 0.63 6.82 -51.93 -0.35 0.28 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.62 6.43 -51.92 -0.33 0.29 16 28 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 1.55 6.16 -51.93 -0.32 1.23 16 31 H 0.07 0.97 6.16 -51.93 -0.32 0.65 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.40 5.70 6.47 -40.82 -0.26 5.44 16 34 H 0.09 1.59 6.37 -52.49 -0.33 1.26 16 35 H 0.12 2.90 6.16 -52.49 -0.32 2.58 16 36 H 0.29 6.08 8.29 -40.82 -0.34 5.74 16 37 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 38 H 0.10 2.27 7.63 -52.48 -0.40 1.87 16 39 H 0.40 4.34 9.10 45.56 0.41 4.75 16 LS Contribution 325.23 15.07 4.90 4.90 Total: -1.00 -30.17 325.23 -7.05 -37.23 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -3.90 Total: 15.23 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -2.65 Total: -8.93 kcal Atomic # 7 Polarization: -29.90 SS G_CDS: 0.37 Total: -29.53 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.74 Total: -30.81 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.03 Total: 11.91 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.17 -7.05 -37.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262209380.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.569 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds