Wall clock time and date at job start Tue Mar 31 2020 06:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47324 * 2 1 4 4 C 1.52999 * 109.46717 * 60.00318 * 3 2 1 5 5 N 1.46501 * 109.46981 * 180.02562 * 3 2 1 6 6 C 1.34771 * 119.99636 * 180.02562 * 5 3 2 7 7 O 1.21592 * 120.00386 * 359.97438 * 6 5 3 8 8 C 1.47645 * 120.00113 * 180.02562 * 6 5 3 9 9 C 1.40016 * 119.89252 * 359.71518 * 8 6 5 10 10 C 1.36316 * 120.10714 * 179.71535 * 9 8 6 11 11 C 1.40888 * 119.88956 * 0.56771 * 10 9 8 12 12 C 1.41111 * 120.10467 * 179.68996 * 11 10 9 13 13 H 1.07998 * 120.00173 * 204.64973 * 12 11 10 14 14 C 1.40230 * 119.99772 * 24.65401 * 12 11 10 15 15 N 1.30645 * 119.99785 * 17.86167 * 14 12 11 16 16 Si 1.86794 * 120.00113 * 197.86268 * 14 12 11 17 17 H 1.48500 * 109.46997 * 59.99881 * 16 14 12 18 18 H 1.48501 * 109.47584 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47076 * 300.00343 * 16 14 12 20 20 C 1.40889 * 119.79666 * 359.71007 * 11 10 9 21 21 C 1.36320 * 119.88553 * 0.02562 * 20 11 10 22 22 C 1.50697 * 109.47381 * 300.00511 * 3 2 1 23 23 O 1.20825 * 120.00036 * 94.99771 * 22 3 2 24 24 O 1.34227 * 120.00262 * 275.00127 * 22 3 2 25 25 H 1.08994 * 109.47379 * 59.98957 * 1 2 3 26 26 H 1.08999 * 109.47041 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46657 * 299.99719 * 1 2 3 28 28 H 1.09008 * 109.46657 * 240.00281 * 2 1 3 29 29 H 1.09001 * 109.47132 * 120.00812 * 2 1 3 30 30 H 1.09000 * 109.47129 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47418 * 299.99762 * 4 3 2 32 32 H 1.09003 * 109.47063 * 60.00461 * 4 3 2 33 33 H 0.96994 * 120.00230 * 0.02562 * 5 3 2 34 34 H 1.08000 * 119.94532 * 0.02562 * 9 8 6 35 35 H 1.07995 * 120.05570 * 180.25331 * 10 9 8 36 36 H 0.97005 * 119.99884 * 180.02562 * 15 14 12 37 37 H 1.07993 * 120.05851 * 179.97438 * 20 11 10 38 38 H 1.08003 * 119.94114 * 179.97438 * 21 20 11 39 39 H 0.96688 * 117.00370 * 179.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1636 1.2493 5 7 3.5051 1.4424 -0.0006 6 6 4.1789 2.6096 -0.0002 7 8 3.5710 3.6626 0.0002 8 6 5.6554 2.6096 -0.0014 9 6 6.3532 1.3957 0.0031 10 6 7.7164 1.3906 -0.0039 11 6 8.4230 2.6095 -0.0035 12 6 9.8341 2.6095 -0.0040 13 1 10.3743 3.4593 0.3863 14 6 10.5350 1.5060 -0.5115 15 7 9.9286 0.6477 -1.2877 16 14 12.3356 1.2632 -0.0777 17 1 12.4766 1.1315 1.3947 18 1 12.8415 0.0315 -0.7350 19 1 13.1200 2.4334 -0.5473 20 6 7.7165 3.8284 -0.0021 21 6 6.3533 3.8233 -0.0006 22 6 1.5377 2.1530 -1.2304 23 8 0.5282 2.8147 -1.1760 24 8 2.2116 2.0507 -2.3867 25 1 -0.3634 0.5140 -0.8898 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5140 0.8899 30 1 1.8938 3.1912 1.2496 31 1 0.4401 2.1637 1.2494 32 1 1.8936 1.6498 2.1393 33 1 3.9900 0.6024 -0.0013 34 1 5.8106 0.4620 0.0070 35 1 8.2537 0.4539 -0.0045 36 1 10.4134 -0.1158 -1.6385 37 1 8.2539 4.7651 -0.0013 38 1 5.8108 4.7572 0.0009 39 1 1.8505 2.5239 -3.1486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262209380.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:53 Heat of formation + Delta-G solvation = -140.029889 kcal Electronic energy + Delta-G solvation = -23215.352149 eV Core-core repulsion = 19700.290942 eV Total energy + Delta-G solvation = -3515.061207 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.04927 -40.46856 -38.97593 -37.55549 -36.97734 -35.66647 -33.90004 -31.94987 -31.28175 -30.08060 -27.77072 -26.55188 -24.63002 -23.63845 -22.79682 -21.29716 -20.89831 -19.38743 -19.22938 -18.61620 -17.98410 -17.19021 -16.80897 -16.31016 -15.89421 -15.72973 -15.64911 -15.07482 -14.96640 -14.51186 -14.22759 -14.07737 -13.81631 -13.62517 -13.33785 -13.08084 -13.05147 -12.95326 -12.79327 -12.64686 -12.63092 -12.47540 -12.32893 -11.81653 -11.77353 -11.56820 -11.35269 -11.10402 -10.63754 -10.25212 -9.55967 -9.40748 -8.78344 -6.47448 0.43951 1.10052 1.16880 1.40245 1.45335 1.53278 1.93196 2.13933 2.18263 2.30131 2.79917 3.52664 3.66398 3.74442 4.15835 4.17965 4.29519 4.33870 4.45072 4.46262 4.59845 4.71798 4.82594 4.93828 4.99584 5.02107 5.04097 5.13089 5.18573 5.30765 5.36666 5.42385 5.54897 5.59987 5.82896 5.95282 6.00484 6.24214 6.54968 6.64934 6.78314 6.90105 6.90952 7.38770 8.16622 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.030705 B = 0.003564 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.681429 B = 7853.676651 C = 8175.723965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C 0.187 3.813 4 C -0.154 4.154 5 N -0.710 5.710 6 C 0.579 3.421 7 O -0.597 6.597 8 C -0.291 4.291 9 C -0.050 4.050 10 C -0.197 4.197 11 C 0.103 3.897 12 C -0.475 4.475 13 H 0.084 0.916 14 C 0.040 3.960 15 N -0.796 5.796 16 Si 0.986 3.014 17 H -0.258 1.258 18 H -0.263 1.263 19 H -0.261 1.261 20 C -0.254 4.254 21 C -0.033 4.033 22 C 0.484 3.516 23 O -0.541 6.541 24 O -0.512 6.512 25 H 0.037 0.963 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.416 0.584 34 H 0.128 0.872 35 H 0.115 0.885 36 H 0.298 0.702 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.695 -8.120 1.594 12.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C 0.099 3.901 4 C -0.211 4.211 5 N -0.365 5.365 6 C 0.373 3.627 7 O -0.481 6.481 8 C -0.296 4.296 9 C -0.069 4.069 10 C -0.217 4.217 11 C 0.099 3.901 12 C -0.502 4.502 13 H 0.102 0.898 14 C -0.179 4.179 15 N -0.419 5.419 16 Si 0.806 3.194 17 H -0.182 1.182 18 H -0.187 1.187 19 H -0.185 1.185 20 C -0.274 4.274 21 C -0.052 4.052 22 C 0.326 3.674 23 O -0.430 6.430 24 O -0.324 6.324 25 H 0.057 0.943 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.134 0.866 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.255 0.745 34 H 0.146 0.854 35 H 0.133 0.867 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -10.222 -7.655 1.767 12.892 hybrid contribution 0.775 0.451 -0.738 1.161 sum -9.447 -7.204 1.029 11.925 Atomic orbital electron populations 1.21872 0.93326 1.03716 1.02247 1.21892 0.97920 0.89685 1.06176 1.20429 0.81167 0.98700 0.89762 1.22177 1.02637 1.01033 0.95300 1.45767 1.04826 1.09205 1.76681 1.18404 0.87749 0.83016 0.73499 1.90636 1.70718 1.32886 1.53825 1.19096 0.90758 0.94566 1.25155 1.20744 0.94199 0.95845 0.96110 1.21019 0.93420 0.98113 1.09110 1.18130 0.94082 0.91872 0.85981 1.20107 0.92002 1.03218 1.34895 0.89785 1.26888 1.05852 0.93582 0.91608 1.69751 1.41148 1.10779 1.20240 0.85175 0.75266 0.79030 0.79913 1.18212 1.18701 1.18479 1.20833 0.93591 0.97345 1.15604 1.20487 0.93816 0.96426 0.94462 1.24160 0.80519 0.77505 0.85222 1.90641 1.27013 1.39660 1.85715 1.84556 1.56323 1.70224 1.21280 0.94334 0.89176 0.91315 0.89279 0.86591 0.93371 0.89458 0.88936 0.74548 0.85387 0.86677 0.89108 0.88056 0.88274 0.72023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.25 71.98 0.67 -1.78 16 2 C -0.12 -2.03 5.09 30.60 0.16 -1.88 16 3 C 0.19 5.01 0.80 2.86 0.00 5.01 16 4 C -0.15 -4.20 7.58 71.98 0.55 -3.65 16 5 N -0.71 -21.46 4.82 -429.35 -2.07 -23.53 16 6 C 0.58 23.44 7.09 86.73 0.61 24.05 16 7 O -0.60 -27.73 13.53 -4.01 -0.05 -27.78 16 8 C -0.29 -12.91 5.89 -19.93 -0.12 -13.03 16 9 C -0.05 -2.10 9.47 22.25 0.21 -1.89 16 10 C -0.20 -9.45 8.63 22.47 0.19 -9.25 16 11 C 0.10 5.24 5.58 -21.28 -0.12 5.12 16 12 C -0.48 -23.67 9.04 23.46 0.21 -23.46 16 13 H 0.08 4.03 7.91 -2.91 -0.02 4.00 16 14 C 0.04 1.82 5.14 85.35 0.44 2.26 16 15 N -0.80 -37.13 10.95 21.87 0.24 -36.90 16 16 Si 0.99 34.05 29.60 68.60 2.03 36.08 16 17 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 18 H -0.26 -8.47 7.11 99.48 0.71 -7.76 16 19 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 20 C -0.25 -12.52 9.73 22.47 0.22 -12.30 16 21 C -0.03 -1.56 9.52 22.25 0.21 -1.34 16 22 C 0.48 15.27 4.79 71.24 0.34 15.61 16 23 O -0.54 -19.28 16.22 21.97 0.36 -18.93 16 24 O -0.51 -14.82 13.02 -51.39 -0.67 -15.49 16 25 H 0.04 0.76 6.82 -2.39 -0.02 0.75 16 26 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.07 6.43 -2.38 -0.02 1.06 16 28 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.71 6.16 -2.39 -0.01 1.70 16 31 H 0.09 2.14 6.16 -2.39 -0.01 2.12 16 32 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.42 10.37 6.47 -92.71 -0.60 9.77 16 34 H 0.13 4.21 6.37 -2.91 -0.02 4.19 16 35 H 0.12 5.56 6.16 -2.91 -0.02 5.55 16 36 H 0.30 12.33 8.29 -92.70 -0.77 11.56 16 37 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 38 H 0.10 4.64 7.63 -2.91 -0.02 4.62 16 39 H 0.42 8.69 9.10 -74.06 -0.67 8.02 16 Total: -1.00 -66.47 325.23 3.24 -63.23 By element: Atomic # 1 Polarization: 39.99 SS G_CDS: -0.17 Total: 39.83 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: 3.58 Total: -16.52 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -1.83 Total: -60.42 kcal Atomic # 8 Polarization: -61.83 SS G_CDS: -0.37 Total: -62.20 kcal Atomic # 14 Polarization: 34.05 SS G_CDS: 2.03 Total: 36.08 kcal Total: -66.47 3.24 -63.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262209380.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.800 kcal (2) G-P(sol) polarization free energy of solvation -66.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds