Wall clock time and date at job start Tue Mar 31 2020 06:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47166 * 2 1 4 4 C 1.53009 * 109.47042 * 184.99741 * 3 2 1 5 5 N 1.46498 * 109.47322 * 304.99756 * 3 2 1 6 6 C 1.34782 * 119.99931 * 300.00047 * 5 3 2 7 7 O 1.21543 * 119.99758 * 0.02562 * 6 5 3 8 8 C 1.47884 * 119.99611 * 179.97438 * 6 5 3 9 9 C 1.39914 * 120.02847 * 359.72486 * 8 6 5 10 10 C 1.38329 * 120.35883 * 179.78558 * 9 8 6 11 11 C 1.37752 * 120.41204 * 0.47149 * 10 9 8 12 12 C 1.40756 * 120.03937 * 359.78709 * 11 10 9 13 13 C 1.41434 * 120.17787 * 180.02562 * 12 11 10 14 14 H 1.08006 * 120.00040 * 334.93208 * 13 12 11 15 15 C 1.39936 * 120.00081 * 154.93452 * 13 12 11 16 16 N 1.30833 * 119.99942 * 342.57237 * 15 13 12 17 17 Si 1.86795 * 120.00344 * 162.57667 * 15 13 12 18 18 H 1.48506 * 109.47134 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47175 * 119.99540 * 17 15 13 20 20 H 1.48497 * 109.47280 * 239.99824 * 17 15 13 21 21 C 1.39006 * 120.02115 * 180.02562 * 8 6 5 22 22 C 1.50701 * 109.47299 * 64.99824 * 3 2 1 23 23 O 1.20824 * 119.99967 * 25.00299 * 22 3 2 24 24 O 1.34227 * 120.00057 * 204.99862 * 22 3 2 25 25 H 1.08997 * 109.47174 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46658 * 59.99795 * 1 2 3 27 27 H 1.09001 * 109.46914 * 300.00277 * 1 2 3 28 28 H 1.09001 * 109.46658 * 120.00205 * 2 1 3 29 29 H 1.09001 * 109.46914 * 239.99722 * 2 1 3 30 30 H 1.08996 * 109.46858 * 60.00383 * 4 3 2 31 31 H 1.08997 * 109.47063 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.46990 * 299.99694 * 4 3 2 33 33 H 0.97002 * 120.00063 * 119.99794 * 5 3 2 34 34 H 1.07998 * 119.82158 * 0.02562 * 9 8 6 35 35 H 1.07997 * 119.79959 * 180.23446 * 10 9 8 36 36 H 1.08002 * 119.98186 * 179.76277 * 11 10 9 37 37 H 0.96999 * 119.99817 * 180.02562 * 16 15 13 38 38 H 1.08001 * 120.20060 * 359.95491 * 21 8 6 39 39 H 0.96697 * 116.99789 * 180.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5649 1.4442 -0.1257 5 7 1.4559 2.1669 -1.1314 6 6 1.6794 1.7426 -2.3910 7 8 2.3650 0.7586 -2.5882 8 6 1.0893 2.4737 -3.5331 9 6 0.2943 3.6025 -3.3064 10 6 -0.2574 4.2941 -4.3698 11 6 -0.0388 3.8742 -5.6634 12 6 0.7538 2.7376 -5.9108 13 6 0.9807 2.3042 -7.2379 14 1 0.2718 2.5499 -8.0149 15 6 2.1235 1.5571 -7.5442 16 7 3.1374 1.5436 -6.7174 17 14 2.2018 0.5791 -9.1338 18 1 0.9357 0.7593 -9.8888 19 1 3.3414 1.0602 -9.9554 20 1 2.3902 -0.8602 -8.8207 21 6 1.3189 2.0362 -4.8324 22 6 1.6413 2.1162 1.2877 23 8 1.4354 1.4544 2.2773 24 8 1.5151 3.4517 1.3352 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.8532 0.9569 -1.0570 31 1 3.9282 2.4719 -0.1261 32 1 3.9995 0.9052 0.7162 33 1 0.9084 2.9520 -0.9741 34 1 0.1136 3.9379 -2.2959 35 1 -0.8666 5.1664 -4.1846 36 1 -0.4761 4.4171 -6.4883 37 1 3.9297 1.0260 -6.9299 38 1 1.9285 1.1629 -5.0118 39 1 1.2577 3.8384 2.1833 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000262400001.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:58 Heat of formation + Delta-G solvation = -116.081971 kcal Electronic energy + Delta-G solvation = -23518.830374 eV Core-core repulsion = 20004.807627 eV Total energy + Delta-G solvation = -3514.022747 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.01096 -39.29138 -37.29363 -36.45906 -35.51064 -33.79676 -32.13296 -30.49683 -29.57914 -29.31934 -25.47705 -25.13345 -23.33338 -22.70009 -21.02365 -20.16364 -19.22352 -18.41047 -17.97367 -17.11393 -15.99005 -15.69962 -15.27149 -14.89123 -14.67743 -14.46187 -13.93539 -13.66502 -13.60235 -13.26459 -13.01204 -12.78838 -12.55759 -12.29229 -12.19771 -11.74148 -11.67742 -11.50558 -11.20563 -11.15230 -11.08518 -10.88607 -10.71080 -10.63087 -10.51130 -9.99840 -9.71667 -9.24783 -8.96873 -8.83436 -7.67104 -7.54794 -6.82800 -4.44154 1.92639 2.15201 2.76590 2.78123 3.06755 3.11091 3.12947 3.45151 3.78875 3.90256 4.56747 4.61277 4.89643 5.07743 5.37686 5.46299 5.57169 5.60706 5.66819 5.76514 5.88790 6.04824 6.07067 6.18515 6.24473 6.27762 6.30732 6.41789 6.68088 6.68601 6.95455 6.97874 7.18108 7.34805 7.65584 7.67102 7.71637 7.88375 8.02141 8.15077 8.47437 8.77294 8.79785 8.85353 10.12077 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.022963 B = 0.004353 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.077102 B = 6430.305760 C = 7055.838436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.197 3.803 4 C -0.165 4.165 5 N -0.726 5.726 6 C 0.573 3.427 7 O -0.538 6.538 8 C -0.128 4.128 9 C -0.217 4.217 10 C -0.097 4.097 11 C -0.210 4.210 12 C 0.098 3.902 13 C -0.460 4.460 14 H 0.081 0.919 15 C 0.074 3.926 16 N -0.784 5.784 17 Si 0.909 3.091 18 H -0.260 1.260 19 H -0.274 1.274 20 H -0.270 1.270 21 C -0.090 4.090 22 C 0.486 3.514 23 O -0.505 6.505 24 O -0.510 6.510 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.406 0.594 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.284 0.716 38 H 0.135 0.865 39 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.649 1.160 11.493 11.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C 0.109 3.891 4 C -0.223 4.223 5 N -0.383 5.383 6 C 0.364 3.636 7 O -0.416 6.416 8 C -0.132 4.132 9 C -0.237 4.237 10 C -0.116 4.116 11 C -0.230 4.230 12 C 0.096 3.904 13 C -0.489 4.489 14 H 0.099 0.901 15 C -0.145 4.145 16 N -0.408 5.408 17 Si 0.733 3.267 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.195 1.195 21 C -0.110 4.110 22 C 0.327 3.673 23 O -0.391 6.391 24 O -0.322 6.322 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.243 0.757 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.152 0.848 39 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -0.843 0.002 11.291 11.322 hybrid contribution -0.294 0.419 0.112 0.524 sum -1.138 0.421 11.403 11.468 Atomic orbital electron populations 1.21758 0.95230 1.02118 1.01759 1.21941 0.96939 0.92978 1.04757 1.20182 0.95950 0.92343 0.80620 1.22272 0.91198 1.03569 1.05275 1.45997 1.54951 1.32647 1.04722 1.18781 0.79142 0.83494 0.82149 1.90635 1.39034 1.26801 1.85087 1.19414 1.02845 0.98203 0.92692 1.20358 1.06580 0.99982 0.96769 1.20437 0.99545 0.98406 0.93191 1.21120 1.07786 0.99017 0.95099 1.17601 0.89960 0.89517 0.93340 1.19622 1.05609 1.29113 0.94529 0.90051 1.25952 0.94692 0.95092 0.98779 1.69793 1.03547 1.31615 1.35883 0.86246 0.79323 0.79838 0.81289 1.18340 1.19914 1.19546 1.21635 1.00089 1.00068 0.89222 1.23558 0.72534 0.80302 0.90904 1.90714 1.45920 1.65530 1.36985 1.84572 1.81293 1.23368 1.42955 0.92254 0.92083 0.93250 0.90315 0.87847 0.87898 0.91544 0.91428 0.75684 0.89191 0.88885 0.88608 0.90499 0.84770 0.73132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.49 37.16 0.35 -1.75 16 2 C -0.13 -1.85 4.37 -26.73 -0.12 -1.96 16 3 C 0.20 2.81 0.71 -132.97 -0.09 2.72 16 4 C -0.17 -2.30 8.38 37.16 0.31 -1.98 16 5 N -0.73 -11.55 4.06 -49.60 -0.20 -11.75 16 6 C 0.57 11.60 6.98 -12.31 -0.09 11.51 16 7 O -0.54 -12.03 12.59 5.33 0.07 -11.96 16 8 C -0.13 -2.89 5.87 -105.04 -0.62 -3.51 16 9 C -0.22 -4.41 9.55 -38.92 -0.37 -4.78 16 10 C -0.10 -2.02 10.01 -39.73 -0.40 -2.42 16 11 C -0.21 -4.87 9.78 -38.81 -0.38 -5.25 16 12 C 0.10 2.53 5.57 -106.87 -0.59 1.94 16 13 C -0.46 -11.83 9.05 -37.73 -0.34 -12.17 16 14 H 0.08 2.00 7.90 -52.48 -0.41 1.58 16 15 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 16 N -0.78 -20.25 10.97 55.55 0.61 -19.64 16 17 Si 0.91 18.41 29.59 -169.99 -5.03 13.38 16 18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 C -0.09 -2.31 8.23 -38.44 -0.32 -2.63 16 22 C 0.49 6.19 6.36 36.01 0.23 6.42 16 23 O -0.51 -7.25 16.04 -18.75 -0.30 -7.55 16 24 O -0.51 -5.05 12.63 -39.25 -0.50 -5.55 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.92 7.29 -51.93 -0.38 0.55 16 27 H 0.05 0.66 6.87 -51.93 -0.36 0.30 16 28 H 0.08 1.05 7.69 -51.93 -0.40 0.65 16 29 H 0.10 1.69 6.32 -51.93 -0.33 1.37 16 30 H 0.10 1.68 6.16 -51.93 -0.32 1.36 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.41 5.89 5.93 -40.82 -0.24 5.65 16 34 H 0.09 1.52 6.38 -52.49 -0.33 1.19 16 35 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 37 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 38 H 0.13 3.72 5.77 -52.49 -0.30 3.41 16 39 H 0.41 2.10 9.10 45.56 0.41 2.51 16 LS Contribution 324.93 15.07 4.90 4.90 Total: -1.00 -29.32 324.93 -6.88 -36.20 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -3.91 Total: 14.12 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -2.51 Total: -12.14 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 0.41 Total: -31.39 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.73 Total: -25.06 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.32 -6.88 -36.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262400001.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.886 kcal (2) G-P(sol) polarization free energy of solvation -29.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds