Wall clock time and date at job start Tue Mar 31 2020 06:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53002 * 109.46766 * 240.00454 * 2 1 3 5 5 C 1.50694 * 109.47288 * 120.00211 * 2 1 3 6 6 O 1.20788 * 120.00044 * 0.02562 * 5 2 1 7 7 C 1.48968 * 120.00202 * 179.97438 * 5 2 1 8 8 O 1.21400 * 119.99844 * 0.02562 * 7 5 2 9 9 N 1.34780 * 120.00220 * 180.02562 * 7 5 2 10 10 C 1.39676 * 119.99824 * 174.78486 * 9 7 5 11 11 C 1.39034 * 120.04428 * 326.27918 * 10 9 7 12 12 C 1.38142 * 120.06073 * 180.02562 * 11 10 9 13 13 C 1.38187 * 120.14229 * 359.72194 * 12 11 10 14 14 C 1.38924 * 120.08713 * 0.55447 * 13 12 11 15 15 O 1.35745 * 120.03025 * 179.72313 * 14 13 12 16 16 C 1.34835 * 116.99825 * 173.82346 * 15 14 13 17 17 H 1.08000 * 120.00041 * 354.58372 * 16 15 14 18 18 C 1.38653 * 119.99818 * 174.59201 * 16 15 14 19 19 N 1.31552 * 120.00115 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99676 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47106 * 60.00392 * 20 18 16 22 22 H 1.48504 * 109.46590 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47243 * 299.99609 * 20 18 16 24 24 C 1.38752 * 119.93735 * 359.44353 * 14 13 12 25 25 H 1.09001 * 109.47471 * 299.99619 * 1 2 3 26 26 H 1.09006 * 109.47251 * 59.99802 * 1 2 3 27 27 H 1.09004 * 109.47203 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46883 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47441 * 300.00213 * 3 2 1 30 30 H 1.09006 * 109.46582 * 60.00383 * 3 2 1 31 31 H 1.08995 * 109.47311 * 299.99132 * 4 2 1 32 32 H 1.08996 * 109.47337 * 59.99924 * 4 2 1 33 33 H 1.09011 * 109.46646 * 179.97438 * 4 2 1 34 34 H 0.97000 * 119.99651 * 354.78230 * 9 7 5 35 35 H 1.07996 * 119.97366 * 359.97438 * 11 10 9 36 36 H 1.07999 * 119.92808 * 180.02562 * 12 11 10 37 37 H 1.08001 * 119.95584 * 180.29847 * 13 12 11 38 38 H 0.97006 * 120.00012 * 180.02562 * 19 18 16 39 39 H 1.08002 * 120.07301 * 180.25365 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 8 1.2475 -1.1699 2.0252 7 6 3.4969 -0.8470 1.4658 8 8 4.2858 -0.3856 0.6667 9 7 3.9462 -1.4829 2.5660 10 6 5.3147 -1.7070 2.7331 11 6 6.1202 -1.9523 1.6267 12 6 7.4736 -2.1745 1.7917 13 6 8.0322 -2.1480 3.0553 14 6 7.2321 -1.9092 4.1656 15 8 7.7811 -1.8890 5.4069 16 6 6.9765 -1.5261 6.4262 17 1 5.9718 -1.1842 6.2258 18 6 7.4390 -1.5916 7.7317 19 7 8.6627 -2.0084 7.9758 20 14 6.3246 -1.0881 9.1438 21 1 5.1132 -1.9471 9.1489 22 1 7.0507 -1.2496 10.4291 23 1 5.9239 0.3319 8.9761 24 6 5.8723 -1.6855 4.0040 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6767 -1.7488 -1.2494 32 1 1.6766 -0.2073 -2.1393 33 1 3.1300 -0.7208 -1.2496 34 1 3.3192 -1.7848 3.2417 35 1 5.6872 -1.9700 0.6375 36 1 8.0973 -2.3644 0.9307 37 1 9.0915 -2.3174 3.1803 38 1 8.9862 -2.0546 8.8892 39 1 5.2489 -1.4955 4.8653 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265098116.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:31 Heat of formation + Delta-G solvation = -72.928339 kcal Electronic energy + Delta-G solvation = -22784.935187 eV Core-core repulsion = 19272.783721 eV Total energy + Delta-G solvation = -3512.151465 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.17722 -39.47047 -38.45036 -36.73033 -36.00878 -34.24830 -32.28463 -29.60018 -28.80341 -27.65541 -27.56192 -26.04452 -25.28336 -22.65578 -21.91248 -20.59211 -19.36394 -18.07366 -17.78778 -17.22470 -16.31481 -15.85870 -15.44929 -15.12166 -15.02136 -14.65482 -14.21701 -14.11256 -13.89948 -13.63259 -13.24953 -13.05787 -12.75953 -12.48426 -12.46499 -12.39727 -11.97938 -11.80550 -11.73548 -11.58504 -11.25417 -11.12827 -11.06246 -10.89472 -10.80514 -10.48617 -9.92732 -9.58907 -9.30814 -8.84558 -7.84270 -7.24811 -6.48912 -4.09008 0.74151 1.99269 2.30575 2.65848 2.97511 3.10914 3.12192 3.14504 3.93038 3.99983 4.32236 4.51323 4.56276 4.57610 4.99806 5.06132 5.20967 5.29361 5.36312 5.50671 5.55063 5.59722 5.61265 5.67260 5.81860 5.87466 5.92339 6.01768 6.04214 6.14149 6.17527 6.49960 6.61441 6.85531 6.90807 7.06005 7.21300 7.35000 7.50546 7.68654 7.93936 7.99481 8.96257 9.64913 10.68764 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.003805 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.068604 B = 7356.673544 C = 8418.497928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.144 4.144 5 C 0.362 3.638 6 O -0.417 6.417 7 C 0.471 3.529 8 O -0.484 6.484 9 N -0.643 5.643 10 C 0.172 3.828 11 C -0.204 4.204 12 C -0.063 4.063 13 C -0.196 4.196 14 C 0.168 3.832 15 O -0.173 6.173 16 C -0.394 4.394 17 H 0.090 0.910 18 C 0.041 3.959 19 N -0.861 5.861 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.270 1.270 24 C -0.252 4.252 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.415 0.585 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.271 0.729 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.540 3.076 -14.554 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 C -0.202 4.202 4 C -0.201 4.201 5 C 0.232 3.768 6 O -0.286 6.286 7 C 0.255 3.745 8 O -0.359 6.359 9 N -0.290 5.290 10 C 0.079 3.921 11 C -0.224 4.224 12 C -0.081 4.081 13 C -0.215 4.215 14 C 0.113 3.887 15 O -0.077 6.077 16 C -0.471 4.471 17 H 0.107 0.893 18 C -0.163 4.163 19 N -0.495 5.495 20 Si 0.764 3.236 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.273 4.273 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.251 0.749 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.081 0.919 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.072 3.066 -14.401 19.689 hybrid contribution -0.936 0.089 1.176 1.506 sum -14.008 3.155 -13.225 19.521 Atomic orbital electron populations 1.21790 0.92144 1.02828 1.02567 1.20952 0.97340 0.97497 0.93738 1.21927 1.03495 0.92264 1.02526 1.21922 1.03434 0.99676 0.95112 1.24955 0.88383 0.76445 0.87043 1.90419 1.58579 1.35864 1.43764 1.20930 0.90857 0.79927 0.82811 1.90739 1.56627 1.44457 1.44036 1.43389 1.07698 1.55469 1.22395 1.17421 0.81427 0.99014 0.94204 1.20514 0.94033 1.10626 0.97276 1.20528 0.94071 0.97679 0.95868 1.20294 0.99703 1.10964 0.90577 1.19074 0.90362 0.92212 0.87018 1.84021 1.37764 1.74746 1.11123 1.21238 0.97338 1.44506 0.83974 0.89264 1.25276 0.96797 0.96638 0.97623 1.70023 1.15355 1.42819 1.21338 0.85801 0.79171 0.79271 0.79329 1.19483 1.20191 1.19481 1.20851 0.95900 1.14713 0.95844 0.91938 0.91412 0.91963 0.89956 0.91119 0.92469 0.92505 0.91129 0.89993 0.74869 0.86297 0.86412 0.86214 0.91881 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 7.76 37.16 0.29 -0.83 16 2 C -0.09 -0.90 0.76 -155.66 -0.12 -1.02 16 3 C -0.14 -1.32 8.29 37.16 0.31 -1.01 16 4 C -0.14 -1.26 8.29 37.16 0.31 -0.95 16 5 C 0.36 4.44 6.02 -29.86 -0.18 4.26 16 6 O -0.42 -5.59 16.09 5.98 0.10 -5.49 16 7 C 0.47 6.89 7.28 -11.81 -0.09 6.80 16 8 O -0.48 -7.76 11.09 5.45 0.06 -7.70 16 9 N -0.64 -10.13 5.32 -10.43 -0.06 -10.19 16 10 C 0.17 3.25 6.27 -83.78 -0.52 2.73 16 11 C -0.20 -3.74 8.65 -39.32 -0.34 -4.08 16 12 C -0.06 -1.13 10.03 -39.64 -0.40 -1.53 16 13 C -0.20 -4.09 9.99 -39.35 -0.39 -4.48 16 14 C 0.17 4.01 6.64 -39.14 -0.26 3.75 16 15 O -0.17 -4.87 9.76 0.05 0.00 -4.87 16 16 C -0.39 -10.87 9.44 30.89 0.29 -10.58 16 17 H 0.09 2.27 5.30 -52.49 -0.28 1.99 16 18 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 19 N -0.86 -24.96 13.67 55.48 0.76 -24.20 16 20 Si 0.94 20.29 29.55 -169.99 -5.02 15.26 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 24 C -0.25 -5.41 9.05 -39.19 -0.35 -5.76 16 25 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 28 H 0.08 0.90 6.43 -51.93 -0.33 0.56 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.84 6.43 -51.92 -0.33 0.51 16 34 H 0.41 5.79 8.29 -40.82 -0.34 5.45 16 35 H 0.12 2.06 6.44 -52.49 -0.34 1.72 16 36 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 38 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.13 2.79 5.71 -52.49 -0.30 2.49 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -30.85 330.69 -5.59 -36.44 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.86 Total: 7.46 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -1.55 Total: -11.69 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.70 Total: -34.39 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.16 Total: -18.07 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.85 -5.59 -36.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265098116.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.484 kcal (2) G-P(sol) polarization free energy of solvation -30.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds