Wall clock time and date at job start Tue Mar 31 2020 06:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53002 * 109.46766 * 240.00454 * 2 1 3 5 5 C 1.50694 * 109.47288 * 120.00211 * 2 1 3 6 6 O 1.20788 * 120.00044 * 0.02562 * 5 2 1 7 7 C 1.48968 * 120.00202 * 179.97438 * 5 2 1 8 8 O 1.21400 * 119.99844 * 0.02562 * 7 5 2 9 9 N 1.34780 * 120.00220 * 180.02562 * 7 5 2 10 10 C 1.39676 * 119.99824 * 174.78486 * 9 7 5 11 11 C 1.39034 * 120.04428 * 326.27918 * 10 9 7 12 12 C 1.38142 * 120.06073 * 180.02562 * 11 10 9 13 13 C 1.38187 * 120.14229 * 359.72194 * 12 11 10 14 14 C 1.38924 * 120.08713 * 0.55447 * 13 12 11 15 15 O 1.35745 * 120.03025 * 179.72313 * 14 13 12 16 16 C 1.34835 * 116.99825 * 173.82346 * 15 14 13 17 17 H 1.08000 * 120.00041 * 354.58372 * 16 15 14 18 18 C 1.38653 * 119.99818 * 174.59201 * 16 15 14 19 19 N 1.31552 * 120.00115 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99676 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47106 * 60.00392 * 20 18 16 22 22 H 1.48504 * 109.46590 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47243 * 299.99609 * 20 18 16 24 24 C 1.38752 * 119.93735 * 359.44353 * 14 13 12 25 25 H 1.09001 * 109.47471 * 299.99619 * 1 2 3 26 26 H 1.09006 * 109.47251 * 59.99802 * 1 2 3 27 27 H 1.09004 * 109.47203 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46883 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47441 * 300.00213 * 3 2 1 30 30 H 1.09006 * 109.46582 * 60.00383 * 3 2 1 31 31 H 1.08995 * 109.47311 * 299.99132 * 4 2 1 32 32 H 1.08996 * 109.47337 * 59.99924 * 4 2 1 33 33 H 1.09011 * 109.46646 * 179.97438 * 4 2 1 34 34 H 0.97000 * 119.99651 * 354.78230 * 9 7 5 35 35 H 1.07996 * 119.97366 * 359.97438 * 11 10 9 36 36 H 1.07999 * 119.92808 * 180.02562 * 12 11 10 37 37 H 1.08001 * 119.95584 * 180.29847 * 13 12 11 38 38 H 0.97006 * 120.00012 * 180.02562 * 19 18 16 39 39 H 1.08002 * 120.07301 * 180.25365 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 8 1.2475 -1.1699 2.0252 7 6 3.4969 -0.8470 1.4658 8 8 4.2858 -0.3856 0.6667 9 7 3.9462 -1.4829 2.5660 10 6 5.3147 -1.7070 2.7331 11 6 6.1202 -1.9523 1.6267 12 6 7.4736 -2.1745 1.7917 13 6 8.0322 -2.1480 3.0553 14 6 7.2321 -1.9092 4.1656 15 8 7.7811 -1.8890 5.4069 16 6 6.9765 -1.5261 6.4262 17 1 5.9718 -1.1842 6.2258 18 6 7.4390 -1.5916 7.7317 19 7 8.6627 -2.0084 7.9758 20 14 6.3246 -1.0881 9.1438 21 1 5.1132 -1.9471 9.1489 22 1 7.0507 -1.2496 10.4291 23 1 5.9239 0.3319 8.9761 24 6 5.8723 -1.6855 4.0040 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6767 -1.7488 -1.2494 32 1 1.6766 -0.2073 -2.1393 33 1 3.1300 -0.7208 -1.2496 34 1 3.3192 -1.7848 3.2417 35 1 5.6872 -1.9700 0.6375 36 1 8.0973 -2.3644 0.9307 37 1 9.0915 -2.3174 3.1803 38 1 8.9862 -2.0546 8.8892 39 1 5.2489 -1.4955 4.8653 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265098116.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:31 Heat of formation + Delta-G solvation = -92.355105 kcal Electronic energy + Delta-G solvation = -22785.777595 eV Core-core repulsion = 19272.783721 eV Total energy + Delta-G solvation = -3512.993873 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.32453 -40.92973 -39.91078 -38.23612 -37.01350 -35.61249 -34.26086 -31.16460 -30.43915 -28.40366 -28.24792 -27.46753 -26.89079 -23.92192 -23.56651 -21.95444 -20.59502 -19.76510 -19.18153 -18.61470 -17.49291 -17.10876 -16.81481 -16.66847 -16.31089 -16.01289 -15.78088 -15.53647 -15.38809 -14.73663 -14.58832 -14.34972 -14.10169 -13.61221 -13.58372 -13.35206 -13.07866 -13.05094 -12.93361 -12.74491 -12.57798 -12.49163 -12.36805 -12.15501 -11.94975 -11.76874 -11.52231 -11.32626 -10.77926 -10.45624 -9.44269 -8.95399 -8.49078 -6.18132 -0.36801 0.46622 0.66321 1.34238 1.44005 1.48782 1.50138 1.78536 2.15920 2.79089 2.88793 3.13291 3.42148 3.45752 3.82327 3.86271 4.06519 4.24339 4.27085 4.37834 4.56552 4.58014 4.67644 4.73361 4.84882 4.92597 4.93090 4.97358 5.00697 5.07078 5.18788 5.20657 5.29275 5.33038 5.40187 5.60080 5.62602 5.70357 5.98436 6.09597 6.21068 6.70666 6.95197 7.73538 8.73450 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.003805 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.068604 B = 7356.673544 C = 8418.497928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 C -0.143 4.143 4 C -0.142 4.142 5 C 0.370 3.630 6 O -0.428 6.428 7 C 0.470 3.530 8 O -0.495 6.495 9 N -0.645 5.645 10 C 0.177 3.823 11 C -0.193 4.193 12 C -0.048 4.048 13 C -0.208 4.208 14 C 0.135 3.865 15 O -0.224 6.224 16 C -0.416 4.416 17 H 0.100 0.900 18 C -0.018 4.018 19 N -0.917 5.917 20 Si 1.015 2.985 21 H -0.257 1.257 22 H -0.271 1.271 23 H -0.259 1.259 24 C -0.259 4.259 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.422 0.578 35 H 0.138 0.862 36 H 0.161 0.839 37 H 0.123 0.877 38 H 0.274 0.726 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.040 3.782 -16.821 23.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.092 4.092 3 C -0.201 4.201 4 C -0.199 4.199 5 C 0.240 3.760 6 O -0.298 6.298 7 C 0.255 3.745 8 O -0.369 6.369 9 N -0.293 5.293 10 C 0.083 3.917 11 C -0.214 4.214 12 C -0.066 4.066 13 C -0.227 4.227 14 C 0.083 3.917 15 O -0.130 6.130 16 C -0.492 4.492 17 H 0.117 0.883 18 C -0.216 4.216 19 N -0.555 5.555 20 Si 0.834 3.166 21 H -0.181 1.181 22 H -0.195 1.195 23 H -0.184 1.184 24 C -0.281 4.281 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.260 0.740 35 H 0.156 0.844 36 H 0.178 0.822 37 H 0.141 0.859 38 H 0.083 0.917 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.613 3.776 -16.730 23.193 hybrid contribution -0.226 -0.131 1.536 1.558 sum -15.839 3.645 -15.194 22.249 Atomic orbital electron populations 1.21802 0.90634 1.03020 1.03572 1.21059 0.98380 0.97360 0.92394 1.21934 1.02191 0.92120 1.03811 1.21930 1.02320 1.00203 0.95475 1.25158 0.86612 0.76322 0.87894 1.90427 1.58277 1.36609 1.44486 1.21536 0.92174 0.78912 0.81880 1.90729 1.57351 1.44614 1.44255 1.43442 1.06508 1.55940 1.23363 1.17475 0.83097 0.97774 0.93345 1.20888 0.94177 1.08503 0.97809 1.20967 0.94442 0.95332 0.95895 1.20560 0.99942 1.11236 0.90988 1.19608 0.91894 0.93593 0.86592 1.83982 1.39162 1.77265 1.12567 1.21726 0.97855 1.45012 0.84621 0.88315 1.26537 0.98422 0.96407 1.00276 1.70164 1.17718 1.45501 1.22069 0.84699 0.77200 0.79360 0.75304 1.18088 1.19496 1.18357 1.20866 0.95183 1.15080 0.96960 0.92468 0.88920 0.92202 0.91923 0.88600 0.92521 0.92131 0.88710 0.91678 0.73960 0.84391 0.82179 0.85927 0.91709 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 7.76 71.98 0.56 -1.20 16 2 C -0.09 -1.49 0.76 -52.93 -0.04 -1.53 16 3 C -0.14 -2.24 8.29 71.98 0.60 -1.64 16 4 C -0.14 -2.04 8.29 71.98 0.60 -1.44 16 5 C 0.37 8.36 6.02 28.56 0.17 8.53 16 6 O -0.43 -10.74 16.09 -1.53 -0.02 -10.77 16 7 C 0.47 12.96 7.28 87.12 0.63 13.59 16 8 O -0.50 -14.90 11.09 -3.40 -0.04 -14.93 16 9 N -0.65 -19.59 5.32 -305.25 -1.62 -21.21 16 10 C 0.18 6.53 6.27 38.22 0.24 6.77 16 11 C -0.19 -6.67 8.65 22.44 0.19 -6.47 16 12 C -0.05 -1.63 10.03 22.23 0.22 -1.41 16 13 C -0.21 -8.71 9.99 22.42 0.22 -8.49 16 14 C 0.13 6.64 6.64 22.56 0.15 6.79 16 15 O -0.22 -13.28 9.76 -22.74 -0.22 -13.50 16 16 C -0.42 -23.98 9.44 67.92 0.64 -23.34 16 17 H 0.10 5.23 5.30 -2.91 -0.02 5.21 16 18 C -0.02 -1.03 5.49 84.83 0.47 -0.56 16 19 N -0.92 -55.69 13.67 21.61 0.30 -55.39 16 20 Si 1.02 42.42 29.55 68.60 2.03 44.45 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 24 C -0.26 -11.36 9.05 22.53 0.20 -11.16 16 25 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 26 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 28 H 0.06 1.25 6.43 -2.39 -0.02 1.23 16 29 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.18 6.43 -2.38 -0.02 1.16 16 34 H 0.42 11.45 8.29 -92.71 -0.77 10.69 16 35 H 0.14 4.31 6.44 -2.91 -0.02 4.29 16 36 H 0.16 4.09 8.06 -2.91 -0.02 4.07 16 37 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 38 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 39 H 0.13 5.51 5.71 -2.91 -0.02 5.49 16 Total: -1.00 -70.01 330.69 5.59 -64.42 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.32 Total: 28.49 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 4.86 Total: -21.54 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -1.33 Total: -76.60 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -0.28 Total: -39.21 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -70.01 5.59 -64.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265098116.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.935 kcal (2) G-P(sol) polarization free energy of solvation -70.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds