Wall clock time and date at job start Tue Mar 31 2020 06:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47455 * 2 1 4 4 N 1.46499 * 109.47084 * 59.99794 * 3 2 1 5 5 C 1.34777 * 120.00104 * 60.00015 * 4 3 2 6 6 O 1.21686 * 119.99542 * 0.02562 * 5 4 3 7 7 C 1.46372 * 119.99852 * 179.97438 * 5 4 3 8 8 H 1.07995 * 120.00336 * 0.02562 * 7 5 4 9 9 C 1.40052 * 119.99833 * 180.02562 * 7 5 4 10 10 N 1.30677 * 119.99997 * 0.02562 * 9 7 5 11 11 Si 1.86797 * 120.00014 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47107 * 90.00261 * 11 9 7 13 13 H 1.48503 * 109.47178 * 210.00375 * 11 9 7 14 14 H 1.48496 * 109.47120 * 329.99920 * 11 9 7 15 15 C 1.50696 * 109.47460 * 180.02562 * 3 2 1 16 16 O 1.20825 * 119.99934 * 24.99210 * 15 3 2 17 17 O 1.34229 * 120.00160 * 205.00329 * 15 3 2 18 18 C 1.45202 * 117.00197 * 179.97438 * 17 15 3 19 19 C 1.50706 * 109.46743 * 300.00017 * 3 2 1 20 20 C 1.38237 * 119.99761 * 150.00309 * 19 3 2 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 3 22 22 C 1.38234 * 120.00220 * 359.94731 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00191 * 329.97411 * 19 3 2 25 25 H 1.08996 * 109.47346 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46889 * 300.00184 * 1 2 3 27 27 H 1.09002 * 109.46760 * 59.99989 * 1 2 3 28 28 H 1.09004 * 109.46737 * 239.99530 * 2 1 3 29 29 H 1.09002 * 109.46760 * 120.00010 * 2 1 3 30 30 H 0.97001 * 119.99869 * 240.00383 * 4 3 2 31 31 H 0.96997 * 119.99810 * 179.97438 * 10 9 7 32 32 H 1.09000 * 109.46625 * 299.99698 * 18 17 15 33 33 H 1.08997 * 109.47141 * 59.99714 * 18 17 15 34 34 H 1.08994 * 109.46923 * 179.97438 * 18 17 15 35 35 H 1.08005 * 120.00088 * 359.96779 * 20 19 3 36 36 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 38 38 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 39 39 H 1.07999 * 119.99990 * 0.02562 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.5518 2.1331 1.1961 5 6 1.8773 1.6726 2.4203 6 8 2.5772 0.6835 2.5319 7 6 1.3898 2.3630 3.6153 8 1 0.7690 3.2411 3.5162 9 6 1.7285 1.8849 4.8874 10 7 2.4802 0.8226 5.0073 11 14 1.1058 2.7655 6.4125 12 1 -0.2020 2.1901 6.8170 13 1 2.0843 2.5952 7.5166 14 1 0.9404 4.2112 6.1165 15 6 3.5471 1.4424 -0.0006 16 8 4.1510 0.4941 -0.4431 17 8 4.2185 2.4959 0.4906 18 6 5.6685 2.4268 0.4584 19 6 1.5377 2.1528 -1.2305 20 6 1.3075 3.5154 -1.1963 21 6 0.8472 4.1671 -2.3252 22 6 0.6182 3.4564 -3.4885 23 6 0.8439 2.0930 -3.5213 24 6 1.3078 1.4420 -2.3936 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.9941 2.9217 1.1071 31 1 2.7150 0.4917 5.8883 32 1 6.0042 1.5683 1.0401 33 1 6.0043 2.3205 -0.5731 34 1 6.0852 3.3397 0.8836 35 1 1.4871 4.0708 -0.2876 36 1 0.6669 5.2316 -2.2984 37 1 0.2590 3.9657 -4.3706 38 1 0.6608 1.5370 -4.4289 39 1 1.4878 0.3774 -2.4203 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274651073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:55 Heat of formation + Delta-G solvation = -91.913995 kcal Electronic energy + Delta-G solvation = -24401.482668 eV Core-core repulsion = 20888.507923 eV Total energy + Delta-G solvation = -3512.974745 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.59969 -38.96328 -37.42680 -35.91826 -34.71136 -32.49363 -31.73830 -30.45850 -30.20986 -27.96325 -26.63305 -25.50337 -22.86303 -22.15231 -21.62022 -20.44153 -18.79170 -17.94559 -16.93656 -16.52796 -16.22602 -15.72444 -15.28283 -15.03022 -14.77422 -14.25109 -13.86775 -13.60600 -13.44195 -13.11356 -12.93856 -12.42556 -12.39191 -12.29004 -12.05911 -11.58969 -11.46332 -11.28826 -11.17188 -11.00064 -10.98454 -10.55186 -10.44510 -10.36397 -10.23150 -10.16540 -9.93054 -8.90011 -8.83065 -8.68631 -7.72924 -7.61082 -6.22733 -4.68725 1.34038 1.47815 2.86522 3.12061 3.19370 3.22361 3.33593 3.90813 4.05566 4.50618 4.56444 4.83377 5.00891 5.05005 5.21224 5.33213 5.42397 5.52603 5.55958 5.65236 5.66000 5.82850 5.85251 5.92456 6.00078 6.07752 6.09880 6.25299 6.43389 6.49893 6.56210 6.68015 6.80784 6.98803 7.01272 7.07688 7.39589 7.73905 7.90727 8.24396 8.44440 8.98246 9.40315 10.53061 10.71043 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.005759 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.286346 B = 4861.030364 C = 5260.905683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.245 3.755 4 N -0.746 5.746 5 C 0.559 3.441 6 O -0.570 6.570 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.089 3.911 10 N -0.764 5.764 11 Si 0.907 3.093 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.265 1.265 15 C 0.483 3.517 16 O -0.519 6.519 17 O -0.341 6.341 18 C 0.038 3.962 19 C -0.082 4.082 20 C -0.101 4.101 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.124 4.124 24 C -0.100 4.100 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.386 0.614 31 H 0.268 0.732 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.840 5.714 -12.888 14.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C 0.155 3.845 4 N -0.405 5.405 5 C 0.364 3.636 6 O -0.452 6.452 7 C -0.576 4.576 8 H 0.087 0.913 9 C -0.131 4.131 10 N -0.393 5.393 11 Si 0.732 3.268 12 H -0.197 1.197 13 H -0.205 1.205 14 H -0.189 1.189 15 C 0.325 3.675 16 O -0.406 6.406 17 O -0.257 6.257 18 C -0.056 4.056 19 C -0.082 4.082 20 C -0.119 4.119 21 C -0.139 4.139 22 C -0.138 4.138 23 C -0.142 4.142 24 C -0.118 4.118 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.221 0.779 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.993 4.573 -12.778 13.717 hybrid contribution -0.262 0.767 0.757 1.109 sum -2.255 5.340 -12.020 13.345 Atomic orbital electron populations 1.21718 0.94948 1.01152 1.02151 1.21854 0.96343 0.93344 1.04472 1.18540 0.85095 0.94801 0.86092 1.46443 1.57546 1.32838 1.03640 1.18229 0.80145 0.84212 0.81035 1.90603 1.41347 1.28086 1.85172 1.20799 1.33959 1.13602 0.89211 0.91323 1.25684 0.93352 0.94134 0.99972 1.70015 1.26596 1.18501 1.24161 0.86377 0.79004 0.80448 0.80975 1.19746 1.20506 1.18880 1.24025 0.91495 0.79618 0.72366 1.90555 1.70235 1.35108 1.44723 1.86557 1.20945 1.43221 1.74931 1.23131 0.77760 1.03294 1.01440 1.19688 1.00356 0.94049 0.94133 1.21132 0.98019 0.93749 0.99011 1.21113 0.99956 0.99888 0.92955 1.21156 1.00262 0.94414 0.98001 1.21096 1.00310 0.94720 0.98089 1.21168 0.98061 1.00495 0.92105 0.93025 0.91659 0.93194 0.91544 0.88066 0.77929 0.92073 0.92030 0.92872 0.88742 0.85040 0.85898 0.86252 0.86014 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.43 37.16 0.35 -2.09 16 2 C -0.12 -2.43 3.80 -26.73 -0.10 -2.54 16 3 C 0.24 4.90 0.56 -134.12 -0.07 4.82 16 4 N -0.75 -16.15 3.86 -51.17 -0.20 -16.35 16 5 C 0.56 15.10 7.07 -12.99 -0.09 15.01 16 6 O -0.57 -17.50 12.23 5.20 0.06 -17.43 16 7 C -0.54 -14.64 9.54 -35.63 -0.34 -14.98 16 8 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 9 C 0.09 2.41 5.50 -17.36 -0.10 2.31 16 10 N -0.76 -22.36 11.83 55.55 0.66 -21.70 16 11 Si 0.91 19.72 29.56 -169.99 -5.02 14.69 16 12 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 15 C 0.48 10.81 5.40 36.00 0.19 11.00 16 16 O -0.52 -12.29 15.84 -18.75 -0.30 -12.58 16 17 O -0.34 -7.34 10.17 -39.25 -0.40 -7.74 16 18 C 0.04 0.66 10.56 101.05 1.07 1.72 16 19 C -0.08 -1.33 4.05 -104.62 -0.42 -1.75 16 20 C -0.10 -1.46 8.96 -39.58 -0.35 -1.81 16 21 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 22 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 23 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 24 C -0.10 -1.43 7.77 -39.58 -0.31 -1.74 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 1.24 7.60 -51.93 -0.39 0.85 16 27 H 0.05 0.75 6.18 -51.93 -0.32 0.43 16 28 H 0.07 1.22 6.24 -51.93 -0.32 0.89 16 29 H 0.10 2.48 6.16 -51.93 -0.32 2.16 16 30 H 0.39 7.39 6.65 -40.82 -0.27 7.12 16 31 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 32 H 0.06 1.14 8.13 -51.93 -0.42 0.72 16 33 H 0.05 0.82 8.13 -51.93 -0.42 0.39 16 34 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.13 1.89 6.71 -52.48 -0.35 1.54 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.13 1.81 6.17 -52.49 -0.32 1.48 16 LS Contribution 326.15 15.07 4.92 4.92 Total: -1.00 -34.36 326.15 -6.46 -40.82 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -4.81 Total: 10.84 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -1.37 Total: 4.54 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.46 Total: -38.05 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.63 Total: -37.76 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.36 -6.46 -40.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274651073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.091 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds