Wall clock time and date at job start Tue Mar 31 2020 06:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47455 * 2 1 4 4 N 1.46499 * 109.47084 * 59.99794 * 3 2 1 5 5 C 1.34777 * 120.00104 * 60.00015 * 4 3 2 6 6 O 1.21686 * 119.99542 * 0.02562 * 5 4 3 7 7 C 1.46372 * 119.99852 * 179.97438 * 5 4 3 8 8 H 1.07995 * 120.00336 * 0.02562 * 7 5 4 9 9 C 1.40052 * 119.99833 * 180.02562 * 7 5 4 10 10 N 1.30677 * 119.99997 * 0.02562 * 9 7 5 11 11 Si 1.86797 * 120.00014 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47107 * 90.00261 * 11 9 7 13 13 H 1.48503 * 109.47178 * 210.00375 * 11 9 7 14 14 H 1.48496 * 109.47120 * 329.99920 * 11 9 7 15 15 C 1.50696 * 109.47460 * 180.02562 * 3 2 1 16 16 O 1.20825 * 119.99934 * 24.99210 * 15 3 2 17 17 O 1.34229 * 120.00160 * 205.00329 * 15 3 2 18 18 C 1.45202 * 117.00197 * 179.97438 * 17 15 3 19 19 C 1.50706 * 109.46743 * 300.00017 * 3 2 1 20 20 C 1.38237 * 119.99761 * 150.00309 * 19 3 2 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 3 22 22 C 1.38234 * 120.00220 * 359.94731 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00191 * 329.97411 * 19 3 2 25 25 H 1.08996 * 109.47346 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46889 * 300.00184 * 1 2 3 27 27 H 1.09002 * 109.46760 * 59.99989 * 1 2 3 28 28 H 1.09004 * 109.46737 * 239.99530 * 2 1 3 29 29 H 1.09002 * 109.46760 * 120.00010 * 2 1 3 30 30 H 0.97001 * 119.99869 * 240.00383 * 4 3 2 31 31 H 0.96997 * 119.99810 * 179.97438 * 10 9 7 32 32 H 1.09000 * 109.46625 * 299.99698 * 18 17 15 33 33 H 1.08997 * 109.47141 * 59.99714 * 18 17 15 34 34 H 1.08994 * 109.46923 * 179.97438 * 18 17 15 35 35 H 1.08005 * 120.00088 * 359.96779 * 20 19 3 36 36 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 38 38 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 39 39 H 1.07999 * 119.99990 * 0.02562 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.5518 2.1331 1.1961 5 6 1.8773 1.6726 2.4203 6 8 2.5772 0.6835 2.5319 7 6 1.3898 2.3630 3.6153 8 1 0.7690 3.2411 3.5162 9 6 1.7285 1.8849 4.8874 10 7 2.4802 0.8226 5.0073 11 14 1.1058 2.7655 6.4125 12 1 -0.2020 2.1901 6.8170 13 1 2.0843 2.5952 7.5166 14 1 0.9404 4.2112 6.1165 15 6 3.5471 1.4424 -0.0006 16 8 4.1510 0.4941 -0.4431 17 8 4.2185 2.4959 0.4906 18 6 5.6685 2.4268 0.4584 19 6 1.5377 2.1528 -1.2305 20 6 1.3075 3.5154 -1.1963 21 6 0.8472 4.1671 -2.3252 22 6 0.6182 3.4564 -3.4885 23 6 0.8439 2.0930 -3.5213 24 6 1.3078 1.4420 -2.3936 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.9941 2.9217 1.1071 31 1 2.7150 0.4917 5.8883 32 1 6.0042 1.5683 1.0401 33 1 6.0043 2.3205 -0.5731 34 1 6.0852 3.3397 0.8836 35 1 1.4871 4.0708 -0.2876 36 1 0.6669 5.2316 -2.2984 37 1 0.2590 3.9657 -4.3706 38 1 0.6608 1.5370 -4.4289 39 1 1.4878 0.3774 -2.4203 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274651073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:54 Heat of formation + Delta-G solvation = -114.429964 kcal Electronic energy + Delta-G solvation = -24402.459033 eV Core-core repulsion = 20888.507923 eV Total energy + Delta-G solvation = -3513.951111 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.16178 -40.32084 -39.17975 -37.62515 -36.41109 -34.55965 -33.31873 -31.72752 -31.36482 -29.51261 -28.39577 -27.19824 -24.13748 -23.28649 -23.15450 -22.15188 -20.43181 -19.63048 -18.66308 -18.06723 -17.88705 -17.22313 -17.18755 -16.36071 -15.95047 -15.76210 -15.43035 -15.01760 -14.94684 -14.51206 -14.33179 -14.20821 -13.86709 -13.82922 -13.43565 -13.14079 -13.03249 -12.84653 -12.72286 -12.61698 -12.55397 -12.13821 -12.02713 -11.97336 -11.80626 -11.70273 -11.55043 -10.91155 -9.90183 -9.79812 -9.73194 -9.52733 -8.27007 -6.83352 0.28677 0.49857 1.15397 1.41237 1.42264 1.57209 1.83346 2.24408 2.50280 2.83848 2.91494 3.49670 3.57800 3.83452 3.91696 4.12641 4.14784 4.17908 4.22191 4.31185 4.33736 4.47805 4.55601 4.63836 4.64298 4.83117 4.96405 5.00171 5.16311 5.25306 5.33578 5.34916 5.37635 5.56291 5.60088 5.62359 5.86797 6.03649 6.08736 6.24241 6.72708 6.89153 7.49156 8.49520 8.68320 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.005759 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.286346 B = 4861.030364 C = 5260.905683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.118 4.118 3 C 0.244 3.756 4 N -0.731 5.731 5 C 0.549 3.451 6 O -0.615 6.615 7 C -0.566 4.566 8 H 0.088 0.912 9 C 0.033 3.967 10 N -0.819 5.819 11 Si 0.994 3.006 12 H -0.262 1.262 13 H -0.277 1.277 14 H -0.248 1.248 15 C 0.473 3.527 16 O -0.545 6.545 17 O -0.357 6.357 18 C 0.031 3.969 19 C -0.104 4.104 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.109 4.109 23 C -0.118 4.118 24 C -0.113 4.113 25 H 0.065 0.935 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.399 0.601 31 H 0.272 0.728 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.152 0.848 37 H 0.158 0.842 38 H 0.153 0.847 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.658 8.301 -14.692 17.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.156 4.156 3 C 0.155 3.845 4 N -0.388 5.388 5 C 0.354 3.646 6 O -0.501 6.501 7 C -0.602 4.602 8 H 0.106 0.894 9 C -0.183 4.183 10 N -0.449 5.449 11 Si 0.813 3.187 12 H -0.187 1.187 13 H -0.202 1.202 14 H -0.171 1.171 15 C 0.317 3.683 16 O -0.434 6.434 17 O -0.273 6.273 18 C -0.063 4.063 19 C -0.105 4.105 20 C -0.133 4.133 21 C -0.134 4.134 22 C -0.126 4.126 23 C -0.136 4.136 24 C -0.132 4.132 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.235 0.765 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.170 0.830 37 H 0.175 0.825 38 H 0.170 0.830 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.836 7.204 -14.623 16.747 hybrid contribution 0.355 -0.011 1.170 1.222 sum -3.480 7.193 -13.454 15.648 Atomic orbital electron populations 1.21619 0.92665 1.02172 1.02198 1.21756 0.98249 0.93320 1.02317 1.18640 0.83784 0.95014 0.87092 1.46010 1.56812 1.32896 1.03128 1.18495 0.79676 0.83690 0.82744 1.90577 1.43240 1.29941 1.86376 1.21344 1.34495 1.14408 0.89979 0.89391 1.26884 0.92911 0.94606 1.03857 1.70193 1.28543 1.20784 1.25344 0.85075 0.78385 0.79597 0.75611 1.18717 1.20174 1.17092 1.24633 0.92678 0.79348 0.71669 1.90513 1.70976 1.35859 1.46085 1.86531 1.23028 1.43030 1.74670 1.23437 0.75882 1.04204 1.02739 1.19454 1.03063 0.94875 0.93071 1.21168 0.99043 0.93002 1.00060 1.21447 0.98469 1.01334 0.92113 1.21629 0.98145 0.94080 0.98778 1.21454 0.98702 0.95438 0.97999 1.21240 0.98961 1.00499 0.92469 0.91580 0.93973 0.90497 0.90318 0.93412 0.76466 0.91776 0.94220 0.90877 0.85216 0.85847 0.83030 0.82481 0.82981 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 9.43 71.98 0.68 -3.81 16 2 C -0.12 -4.95 3.80 30.59 0.12 -4.83 16 3 C 0.24 10.10 0.56 2.11 0.00 10.10 16 4 N -0.73 -32.74 3.86 -434.02 -1.67 -34.41 16 5 C 0.55 31.02 7.07 86.36 0.61 31.63 16 6 O -0.62 -40.20 12.23 -4.30 -0.05 -40.25 16 7 C -0.57 -31.39 9.54 24.83 0.24 -31.15 16 8 H 0.09 4.36 7.85 -2.91 -0.02 4.33 16 9 C 0.03 1.80 5.50 85.30 0.47 2.27 16 10 N -0.82 -49.89 11.83 21.84 0.26 -49.63 16 11 Si 0.99 40.62 29.56 68.60 2.03 42.65 16 12 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 13 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 14 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 15 C 0.47 22.10 5.40 71.23 0.39 22.48 16 16 O -0.54 -27.13 15.84 21.97 0.35 -26.78 16 17 O -0.36 -15.88 10.17 -51.40 -0.52 -16.40 16 18 C 0.03 1.08 10.56 113.37 1.20 2.28 16 19 C -0.10 -3.32 4.05 -19.86 -0.08 -3.40 16 20 C -0.11 -3.13 8.96 22.27 0.20 -2.93 16 21 C -0.12 -2.31 10.05 22.27 0.22 -2.09 16 22 C -0.11 -1.86 10.05 22.27 0.22 -1.64 16 23 C -0.12 -2.32 10.05 22.27 0.22 -2.10 16 24 C -0.11 -3.06 7.77 22.27 0.17 -2.88 16 25 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 26 H 0.04 1.64 7.60 -2.39 -0.02 1.62 16 27 H 0.08 2.23 6.18 -2.39 -0.01 2.22 16 28 H 0.08 3.02 6.24 -2.38 -0.01 3.00 16 29 H 0.05 2.51 6.16 -2.39 -0.01 2.50 16 30 H 0.40 15.54 6.65 -92.71 -0.62 14.92 16 31 H 0.27 15.16 8.29 -92.71 -0.77 14.39 16 32 H 0.04 1.55 8.13 -2.39 -0.02 1.53 16 33 H 0.07 2.25 8.13 -2.39 -0.02 2.23 16 34 H 0.13 3.55 8.14 -2.39 -0.02 3.53 16 35 H 0.12 3.47 6.71 -2.91 -0.02 3.45 16 36 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 37 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 38 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.12 3.38 6.17 -2.91 -0.02 3.36 16 Total: -1.00 -80.11 326.15 5.51 -74.60 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: 0.46 Total: 36.29 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 4.66 Total: 13.93 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -1.42 Total: -84.04 kcal Atomic # 8 Polarization: -83.20 SS G_CDS: -0.23 Total: -83.43 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -80.11 5.51 -74.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274651073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.826 kcal (2) G-P(sol) polarization free energy of solvation -80.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds