Wall clock time and date at job start Tue Mar 31 2020 06:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42906 * 109.47458 * 2 1 4 4 C 1.50698 * 109.47373 * 240.00142 * 2 1 3 5 5 O 1.21295 * 119.99636 * 265.00433 * 4 2 1 6 6 N 1.34772 * 120.00448 * 84.99941 * 4 2 1 7 7 C 1.39923 * 120.00455 * 175.49131 * 6 4 2 8 8 C 1.38961 * 120.03694 * 215.14923 * 7 6 4 9 9 C 1.38156 * 120.06811 * 179.97438 * 8 7 6 10 10 C 1.38167 * 120.13839 * 359.74135 * 9 8 7 11 11 C 1.38912 * 120.06963 * 0.50868 * 10 9 8 12 12 O 1.35749 * 120.03257 * 179.76938 * 11 10 9 13 13 C 1.34831 * 117.00359 * 354.34322 * 12 11 10 14 14 H 1.08006 * 119.99709 * 5.02924 * 13 12 11 15 15 C 1.38652 * 120.00383 * 185.02602 * 13 12 11 16 16 N 1.31556 * 120.00157 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99741 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46743 * 90.00108 * 17 15 13 19 19 H 1.48496 * 109.47035 * 209.99906 * 17 15 13 20 20 H 1.48495 * 109.47257 * 330.00312 * 17 15 13 21 21 C 1.38709 * 120.03596 * 35.12026 * 7 6 4 22 22 C 1.53004 * 109.47220 * 119.99893 * 2 1 3 23 23 C 1.53004 * 117.49368 * 13.74605 * 22 2 1 24 24 C 1.52999 * 117.50002 * 305.08996 * 22 2 1 25 25 H 1.08998 * 109.47278 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47130 * 300.00218 * 1 2 3 27 27 H 1.09002 * 109.47140 * 59.99723 * 1 2 3 28 28 H 0.96700 * 114.00079 * 179.97438 * 3 2 1 29 29 H 0.97005 * 119.99568 * 355.49106 * 6 4 2 30 30 H 1.08002 * 119.96561 * 359.97438 * 8 7 6 31 31 H 1.08005 * 119.93115 * 179.97438 * 9 8 7 32 32 H 1.07997 * 119.96659 * 180.25717 * 10 9 8 33 33 H 0.97001 * 120.00121 * 179.97438 * 16 15 13 34 34 H 1.08006 * 120.07023 * 0.05326 * 21 7 6 35 35 H 1.08997 * 115.55342 * 159.41287 * 22 2 1 36 36 H 1.09002 * 117.50200 * 0.02562 * 23 22 2 37 37 H 1.09006 * 117.49643 * 145.01721 * 23 22 2 38 38 H 1.08993 * 117.50022 * 214.97405 * 24 22 2 39 39 H 1.09003 * 117.49387 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.3207 -1.8873 -1.1759 6 7 2.1611 -0.0381 -2.3914 7 6 2.7158 -0.6715 -3.5090 8 6 3.5054 0.0494 -4.3966 9 6 4.0538 -0.5755 -5.4999 10 6 3.8237 -1.9197 -5.7216 11 6 3.0310 -2.6447 -4.8409 12 8 2.8015 -3.9643 -5.0620 13 6 3.2733 -4.4831 -6.2136 14 1 3.8758 -3.8756 -6.8727 15 6 2.9851 -5.7966 -6.5517 16 7 3.4458 -6.3029 -7.6750 17 14 1.9437 -6.8475 -5.4112 18 1 0.5112 -6.7011 -5.7737 19 1 2.3453 -8.2708 -5.5454 20 1 2.1469 -6.4060 -4.0080 21 6 2.4786 -2.0199 -3.7317 22 6 2.0400 -0.7212 1.2493 23 6 1.0325 -1.5532 2.0454 24 6 1.5399 -0.2226 2.6065 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.9703 1.4236 0.0004 29 1 1.8692 0.8850 -2.4522 30 1 3.6905 1.0993 -4.2237 31 1 4.6668 -0.0130 -6.1886 32 1 4.2572 -2.4064 -6.5828 33 1 3.2445 -7.2219 -7.9114 34 1 1.8649 -2.5823 -3.0435 35 1 3.0646 -1.0889 1.1945 36 1 0.0064 -1.5871 1.6789 37 1 1.3945 -2.4681 2.5146 38 1 2.2354 -0.2625 3.4448 39 1 0.8479 0.6196 2.6094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285895901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:28 Heat of formation + Delta-G solvation = -49.571503 kcal Electronic energy + Delta-G solvation = -22987.292391 eV Core-core repulsion = 19476.153754 eV Total energy + Delta-G solvation = -3511.138637 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.83552 -39.20313 -38.09361 -36.58088 -35.94191 -34.05556 -32.36651 -30.98052 -29.64869 -28.55683 -25.64944 -25.16424 -22.99017 -22.61241 -21.61799 -20.74771 -19.82468 -18.39503 -18.04848 -17.41252 -16.87490 -15.80128 -15.66968 -15.23215 -15.12885 -14.45489 -14.34355 -13.93415 -13.76667 -13.67947 -13.37604 -12.91999 -12.80126 -12.45795 -12.38821 -12.28329 -12.05023 -11.63419 -11.49316 -11.20699 -10.99712 -10.90222 -10.83991 -10.66151 -10.46662 -10.19958 -9.83783 -9.58154 -9.19994 -8.85687 -7.84003 -7.32588 -6.40391 -4.06941 1.85026 2.21453 2.65679 2.95463 3.25120 3.28356 3.46116 3.48916 3.90298 4.26856 4.30451 4.32779 4.51278 4.60906 4.75015 4.85194 4.97482 5.12160 5.16736 5.32671 5.41783 5.50932 5.55442 5.61330 5.71098 5.77873 5.88890 5.93682 6.05579 6.10719 6.25426 6.48261 6.74886 6.91257 7.09110 7.11948 7.31420 7.56920 7.59304 7.81219 8.03576 8.20550 8.95145 9.58205 10.67014 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019196 B = 0.004163 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.298512 B = 6724.050092 C = 7893.521327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.155 3.845 3 O -0.547 6.547 4 C 0.483 3.517 5 O -0.501 6.501 6 N -0.661 5.661 7 C 0.170 3.830 8 C -0.226 4.226 9 C -0.060 4.060 10 C -0.232 4.232 11 C 0.173 3.827 12 O -0.213 6.213 13 C -0.389 4.389 14 H 0.108 0.892 15 C 0.065 3.935 16 N -0.879 5.879 17 Si 0.903 3.097 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.258 1.258 21 C -0.188 4.188 22 C -0.173 4.173 23 C -0.168 4.168 24 C -0.165 4.165 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.383 0.617 29 H 0.411 0.589 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.134 0.866 33 H 0.279 0.721 34 H 0.133 0.867 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.265 15.300 16.137 22.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.111 3.889 3 O -0.353 6.353 4 C 0.268 3.732 5 O -0.374 6.374 6 N -0.306 5.306 7 C 0.077 3.923 8 C -0.247 4.247 9 C -0.079 4.079 10 C -0.251 4.251 11 C 0.120 3.880 12 O -0.118 6.118 13 C -0.465 4.465 14 H 0.125 0.875 15 C -0.139 4.139 16 N -0.517 5.517 17 Si 0.728 3.272 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.182 1.182 21 C -0.209 4.209 22 C -0.192 4.192 23 C -0.205 4.205 24 C -0.202 4.202 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.232 0.768 29 H 0.247 0.753 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.152 0.848 33 H 0.090 0.910 34 H 0.151 0.849 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.804 14.196 16.218 22.083 hybrid contribution 0.277 -0.212 0.093 0.361 sum -4.527 13.984 16.311 21.957 Atomic orbital electron populations 1.21903 0.90566 1.03639 1.03933 1.20806 0.96172 0.81742 0.90218 1.86548 1.27526 1.24425 1.96788 1.21422 0.78661 0.88099 0.84989 1.90795 1.46675 1.15204 1.84706 1.43392 1.61424 1.16460 1.09358 1.17209 0.95801 0.91990 0.87319 1.20356 1.05631 0.99537 0.99184 1.20569 0.97439 0.94029 0.95839 1.21309 1.05603 0.94837 1.03376 1.18874 0.92487 0.84009 0.92678 1.83586 1.69937 1.18525 1.39746 1.20790 1.32342 0.97675 0.95669 0.87514 1.24449 0.97031 0.96184 0.96192 1.69645 1.44094 1.16097 1.21858 0.86214 0.80256 0.78663 0.82070 1.19850 1.20726 1.18179 1.20166 1.07302 0.93807 0.99620 1.22608 1.00600 1.04593 0.91376 1.23105 0.99305 0.95201 1.02874 1.22947 1.03726 0.98093 0.95443 0.89829 0.90371 0.91105 0.76841 0.75295 0.87113 0.86692 0.84801 0.91044 0.84933 0.87051 0.87944 0.88447 0.88623 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 7.48 37.15 0.28 -1.03 16 2 C 0.15 1.61 1.14 -91.77 -0.10 1.50 16 3 O -0.55 -4.73 12.32 -35.23 -0.43 -5.16 16 4 C 0.48 6.94 6.53 -10.99 -0.07 6.87 16 5 O -0.50 -9.46 13.68 5.54 0.08 -9.39 16 6 N -0.66 -9.11 5.22 -9.88 -0.05 -9.16 16 7 C 0.17 3.03 6.30 -83.72 -0.53 2.50 16 8 C -0.23 -3.72 9.96 -39.34 -0.39 -4.11 16 9 C -0.06 -1.07 10.03 -39.64 -0.40 -1.47 16 10 C -0.23 -5.06 9.17 -39.36 -0.36 -5.42 16 11 C 0.17 4.18 6.64 -39.13 -0.26 3.92 16 12 O -0.21 -5.88 8.58 0.05 0.00 -5.88 16 13 C -0.39 -11.21 9.95 30.89 0.31 -10.90 16 14 H 0.11 3.10 5.43 -52.48 -0.29 2.82 16 15 C 0.06 1.85 5.49 -17.52 -0.10 1.76 16 16 N -0.88 -25.69 13.96 55.48 0.77 -24.92 16 17 Si 0.90 22.34 28.62 -169.99 -4.86 17.48 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.26 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.19 -4.10 8.64 -39.21 -0.34 -4.44 16 22 C -0.17 -1.77 4.73 -90.62 -0.43 -2.19 16 23 C -0.17 -1.55 9.66 -26.69 -0.26 -1.81 16 24 C -0.17 -1.31 9.85 -26.70 -0.26 -1.58 16 25 H 0.08 0.79 6.74 -51.93 -0.35 0.44 16 26 H 0.08 0.60 6.96 -51.93 -0.36 0.23 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.38 2.37 9.04 45.56 0.41 2.78 16 29 H 0.41 4.34 8.33 -40.82 -0.34 4.00 16 30 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 32 H 0.13 3.04 5.63 -52.49 -0.30 2.75 16 33 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.13 3.05 6.23 -52.48 -0.33 2.72 16 35 H 0.11 1.27 8.09 -51.93 -0.42 0.85 16 36 H 0.10 0.88 5.89 -51.93 -0.31 0.57 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.73 7.28 -51.93 -0.38 0.35 16 LS Contribution 327.75 15.07 4.94 4.94 Total: -1.00 -32.80 327.75 -6.37 -39.18 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -3.90 Total: 9.31 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -2.91 Total: -16.40 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.72 Total: -34.08 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.36 Total: -20.43 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.86 Total: 17.48 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.80 -6.37 -39.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285895901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.394 kcal (2) G-P(sol) polarization free energy of solvation -32.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds