Wall clock time and date at job start Tue Mar 31 2020 06:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38136 * 120.03702 * 2 1 4 4 C 1.38262 * 120.07009 * 180.02562 * 3 2 1 5 5 C 1.38304 * 120.14401 * 359.95827 * 4 3 2 6 6 C 1.38089 * 120.06808 * 359.97438 * 5 4 3 7 7 C 1.38857 * 120.03531 * 180.23388 * 2 1 3 8 8 N 1.39926 * 120.07134 * 359.97438 * 7 2 1 9 9 C 1.34779 * 119.99825 * 205.07067 * 8 7 2 10 10 O 1.21283 * 120.00197 * 5.52293 * 9 8 7 11 11 C 1.50697 * 119.99592 * 185.52083 * 9 8 7 12 12 O 1.45203 * 109.47118 * 179.97438 * 11 9 8 13 13 C 1.34230 * 116.99976 * 180.02562 * 12 11 9 14 14 O 1.20821 * 120.00429 * 0.02562 * 13 12 11 15 15 C 1.50707 * 119.99694 * 180.02562 * 13 12 11 16 16 C 1.52992 * 109.47005 * 180.02562 * 15 13 12 17 17 C 1.50705 * 109.47381 * 180.02562 * 16 15 13 18 18 H 1.07995 * 119.99370 * 0.02562 * 17 16 15 19 19 C 1.37868 * 120.00186 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00184 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99914 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46992 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46934 * 120.00120 * 21 19 17 24 24 H 1.48499 * 109.46955 * 239.99922 * 21 19 17 25 25 H 1.08993 * 109.47033 * 90.00013 * 1 2 3 26 26 H 1.09003 * 109.47126 * 209.99492 * 1 2 3 27 27 H 1.08994 * 109.47014 * 329.99607 * 1 2 3 28 28 H 1.07999 * 119.95988 * 0.02562 * 3 2 1 29 29 H 1.07996 * 119.92574 * 179.97438 * 4 3 2 30 30 H 1.07994 * 119.96630 * 180.02562 * 5 4 3 31 31 H 1.08005 * 120.03662 * 179.97438 * 6 5 4 32 32 H 0.97001 * 120.00189 * 25.07000 * 8 7 2 33 33 H 1.08997 * 109.47544 * 300.00419 * 11 9 8 34 34 H 1.08999 * 109.47178 * 60.00197 * 11 9 8 35 35 H 1.08998 * 109.47080 * 300.00184 * 15 13 12 36 36 H 1.09000 * 109.46735 * 60.00328 * 15 13 12 37 37 H 1.08998 * 109.47348 * 300.00015 * 16 15 13 38 38 H 1.08997 * 109.47625 * 60.00015 * 16 15 13 39 39 H 0.97006 * 120.00147 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5811 1.1966 -0.0005 5 6 4.2763 0.0010 -0.0002 6 6 3.5909 -1.1978 0.0012 7 6 2.2020 -1.2021 -0.0049 8 7 1.5046 -2.4152 -0.0093 9 6 2.0856 -3.5282 0.4808 10 8 3.1717 -3.4599 1.0162 11 6 1.3856 -4.8576 0.3634 12 8 2.2094 -5.8929 0.9615 13 6 1.7262 -7.1450 0.9391 14 8 0.6508 -7.3687 0.4360 15 6 2.5253 -8.2719 1.5415 16 6 1.7549 -9.5843 1.3841 17 6 2.5536 -10.7111 1.9871 18 1 3.5144 -10.5110 2.4378 19 6 2.0573 -11.9972 1.9642 20 7 0.8871 -12.2407 1.4157 21 14 3.0471 -13.3938 2.7122 22 1 4.3193 -12.8600 3.2615 23 1 2.2638 -14.0262 3.8039 24 1 3.3445 -14.4052 1.6664 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6584 2.1311 0.0004 29 1 4.1193 2.1329 -0.0010 30 1 5.3562 0.0050 -0.0002 31 1 4.1344 -2.1312 0.0010 32 1 0.6031 -2.4551 -0.3651 33 1 0.4275 -4.8107 0.8812 34 1 1.2190 -5.0889 -0.6886 35 1 3.4848 -8.3506 1.0304 36 1 2.6927 -8.0731 2.6001 37 1 0.7953 -9.5058 1.8950 38 1 1.5878 -9.7829 0.3255 39 1 0.5377 -13.1456 1.3999 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290997082.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:43 Heat of formation + Delta-G solvation = -123.698625 kcal Electronic energy + Delta-G solvation = -21698.426906 eV Core-core repulsion = 18184.073876 eV Total energy + Delta-G solvation = -3514.353030 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.04182 -41.35830 -39.59702 -37.61832 -36.04755 -35.65935 -33.53196 -33.20999 -31.59185 -29.56711 -27.93940 -27.49798 -24.53962 -23.80780 -22.33663 -21.64750 -21.53574 -19.20793 -19.09956 -18.26448 -18.01493 -17.90278 -17.08220 -16.61457 -16.52678 -16.46358 -15.72018 -15.33991 -15.05304 -14.75680 -14.60966 -14.28970 -14.11088 -13.93211 -13.80189 -13.27914 -13.16992 -13.05194 -12.86439 -12.49685 -12.40992 -12.18088 -12.03900 -11.91702 -11.77561 -11.64132 -11.52175 -11.28232 -10.93418 -10.58509 -9.68593 -9.07170 -8.20593 -6.33657 0.22316 0.43258 1.11121 1.15059 1.33507 1.44015 1.44084 1.57991 2.17835 2.43802 2.84103 3.13445 3.32897 3.85491 3.90834 3.93256 3.95287 4.02219 4.22366 4.39833 4.42936 4.43429 4.47454 4.54583 4.78615 4.81399 4.86474 5.00138 5.19379 5.26763 5.31305 5.36965 5.47048 5.55324 5.55397 5.62492 5.80470 6.08037 6.13067 6.19899 6.69949 6.84176 6.86064 7.36390 8.92065 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.043704 B = 0.002311 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.526778 B =12114.084339 C =12653.300786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.117 4.117 3 C -0.104 4.104 4 C -0.135 4.135 5 C -0.117 4.117 6 C -0.155 4.155 7 C 0.127 3.873 8 N -0.650 5.650 9 C 0.520 3.480 10 O -0.535 6.535 11 C 0.041 3.959 12 O -0.346 6.346 13 C 0.472 3.528 14 O -0.532 6.532 15 C -0.095 4.095 16 C 0.039 3.961 17 C -0.544 4.544 18 H 0.075 0.925 19 C -0.003 4.003 20 N -0.934 5.934 21 Si 0.973 3.027 22 H -0.256 1.256 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.154 0.846 29 H 0.148 0.852 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.429 0.571 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.114 0.886 37 H -0.006 1.006 38 H -0.006 1.006 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.599 29.518 -4.484 29.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.120 4.120 3 C -0.122 4.122 4 C -0.153 4.153 5 C -0.135 4.135 6 C -0.175 4.175 7 C 0.033 3.967 8 N -0.298 5.298 9 C 0.307 3.693 10 O -0.410 6.410 11 C -0.036 4.036 12 O -0.262 6.262 13 C 0.317 3.683 14 O -0.421 6.421 15 C -0.133 4.133 16 C 0.002 3.998 17 C -0.582 4.582 18 H 0.093 0.907 19 C -0.201 4.201 20 N -0.574 5.574 21 Si 0.797 3.203 22 H -0.180 1.180 23 H -0.206 1.206 24 H -0.205 1.205 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.104 0.896 28 H 0.171 0.829 29 H 0.165 0.835 30 H 0.153 0.847 31 H 0.139 0.861 32 H 0.269 0.731 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.013 0.987 38 H 0.013 0.987 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.897 29.315 -4.307 29.643 hybrid contribution -0.300 -1.117 -0.042 1.157 sum 0.598 28.198 -4.350 28.537 Atomic orbital electron populations 1.20834 0.88793 1.04009 1.03683 1.19978 0.97662 0.91070 1.03269 1.21249 0.94306 0.97685 0.98998 1.21474 0.94762 0.98496 1.00613 1.21282 1.00853 0.91933 0.99477 1.21434 0.93367 0.99901 1.02812 1.17793 0.91430 0.85051 1.02416 1.43165 1.19672 1.05983 1.60962 1.20395 0.85797 0.85623 0.77494 1.90723 1.22081 1.86276 1.41951 1.22833 0.94628 0.83639 1.02486 1.86592 1.49205 1.17086 1.73310 1.24494 0.85223 0.82908 0.75698 1.90634 1.23562 1.84265 1.43672 1.21542 0.99657 0.89108 1.02961 1.18809 0.94655 0.90466 0.95877 1.21664 1.05367 0.92934 1.38214 0.90708 1.26059 0.96129 1.02139 0.95776 1.70149 1.19836 1.21602 1.45780 0.85284 0.78904 0.78198 0.77937 1.17975 1.20552 1.20546 0.89402 0.91500 0.89565 0.82863 0.83472 0.84726 0.86134 0.73094 0.85805 0.85876 0.86781 0.86775 0.98742 0.98747 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.44 71.24 0.67 -0.30 16 2 C -0.12 -1.74 5.90 -19.74 -0.12 -1.85 16 3 C -0.10 -1.34 9.70 22.25 0.22 -1.12 16 4 C -0.13 -1.91 10.04 22.29 0.22 -1.69 16 5 C -0.12 -2.18 10.04 22.25 0.22 -1.96 16 6 C -0.15 -3.66 8.72 22.39 0.20 -3.46 16 7 C 0.13 2.56 6.41 38.15 0.24 2.80 16 8 N -0.65 -11.50 4.97 -303.50 -1.51 -13.01 16 9 C 0.52 12.72 7.71 87.66 0.68 13.40 16 10 O -0.53 -17.71 13.66 15.76 0.22 -17.49 16 11 C 0.04 0.98 5.95 71.23 0.42 1.40 16 12 O -0.35 -11.43 9.76 -45.06 -0.44 -11.87 16 13 C 0.47 18.13 7.96 71.24 0.57 18.69 16 14 O -0.53 -23.15 15.73 21.98 0.35 -22.81 16 15 C -0.10 -3.87 5.75 29.85 0.17 -3.70 16 16 C 0.04 2.10 4.26 29.85 0.13 2.23 16 17 C -0.54 -30.41 9.11 25.60 0.23 -30.17 16 18 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 19 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 20 N -0.93 -57.54 13.29 21.44 0.28 -57.25 16 21 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 22 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 25 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.07 0.53 7.00 -2.39 -0.02 0.51 16 27 H 0.09 0.52 8.09 -2.39 -0.02 0.50 16 28 H 0.15 1.06 8.06 -2.91 -0.02 1.03 16 29 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 30 H 0.13 2.08 8.06 -2.91 -0.02 2.05 16 31 H 0.12 3.44 5.79 -2.91 -0.02 3.42 16 32 H 0.43 4.34 7.42 -92.71 -0.69 3.66 16 33 H 0.12 2.42 8.13 -2.39 -0.02 2.40 16 34 H 0.12 2.46 8.13 -2.39 -0.02 2.44 16 35 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 36 H 0.11 4.21 8.14 -2.39 -0.02 4.19 16 37 H -0.01 -0.35 8.10 -2.39 -0.02 -0.37 16 38 H -0.01 -0.35 8.10 -2.39 -0.02 -0.37 16 39 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -77.38 340.12 5.62 -71.76 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.38 Total: 10.24 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 4.32 Total: -5.45 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -1.22 Total: -70.27 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: 0.12 Total: -52.16 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -77.38 5.62 -71.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290997082.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.941 kcal (2) G-P(sol) polarization free energy of solvation -77.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds