Wall clock time and date at job start Tue Mar 31 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38287 * 119.92491 * 2 1 4 4 C 1.38109 * 120.06576 * 180.02562 * 3 2 1 5 5 C 1.38878 * 119.92977 * 0.23040 * 4 3 2 6 6 N 1.39927 * 120.06630 * 179.72286 * 5 4 3 7 7 C 1.34778 * 120.00426 * 33.29281 * 6 5 4 8 8 O 1.21296 * 119.99695 * 5.27234 * 7 6 5 9 9 C 1.50692 * 120.00463 * 185.27084 * 7 6 5 10 10 O 1.45195 * 109.47502 * 179.97438 * 9 7 6 11 11 C 1.34226 * 117.00425 * 179.97438 * 10 9 7 12 12 O 1.20833 * 119.99987 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00218 * 180.02562 * 11 10 9 14 14 C 1.53003 * 109.46874 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47100 * 180.02562 * 14 13 11 16 16 H 1.08007 * 119.99451 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00221 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99960 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00203 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47558 * 89.99553 * 19 17 15 21 21 H 1.48500 * 109.47174 * 209.99864 * 19 17 15 22 22 H 1.48507 * 109.47079 * 329.99621 * 19 17 15 23 23 C 1.38867 * 119.85665 * 359.49527 * 5 4 3 24 24 C 1.38108 * 119.93280 * 0.50320 * 23 5 4 25 25 H 1.08997 * 109.47196 * 90.00330 * 1 2 3 26 26 H 1.09001 * 109.46970 * 210.00363 * 1 2 3 27 27 H 1.09004 * 109.47548 * 329.99737 * 1 2 3 28 28 H 1.07999 * 119.96687 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.03249 * 179.97438 * 4 3 2 30 30 H 0.96996 * 119.99827 * 213.28925 * 6 5 4 31 31 H 1.08996 * 109.47387 * 300.00010 * 9 7 6 32 32 H 1.09005 * 109.46988 * 59.99646 * 9 7 6 33 33 H 1.08990 * 109.47202 * 300.00385 * 13 11 10 34 34 H 1.09004 * 109.47119 * 60.00579 * 13 11 10 35 35 H 1.08998 * 109.47323 * 299.99936 * 14 13 11 36 36 H 1.09004 * 109.47252 * 60.00608 * 14 13 11 37 37 H 0.97001 * 120.00172 * 180.02562 * 18 17 15 38 38 H 1.08003 * 120.03350 * 180.23156 * 23 5 4 39 39 H 1.07996 * 119.96656 * 179.74852 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2738 0.0000 -0.0059 6 7 5.6731 0.0002 -0.0123 7 6 6.3499 0.9747 0.6270 8 8 5.7503 1.7966 1.2874 9 6 7.8516 1.0431 0.5216 10 8 8.3400 2.1725 1.2924 11 6 9.6669 2.3749 1.3031 12 8 10.3962 1.6331 0.6883 13 6 10.2471 3.5272 2.0819 14 6 11.7694 3.5318 1.9277 15 6 12.3497 4.6837 2.7070 16 1 11.6979 5.3461 3.2576 17 6 13.7126 4.8922 2.7172 18 7 14.5062 4.0853 2.0473 19 14 14.4320 6.3196 3.6838 20 1 14.7398 5.8757 5.0670 21 1 15.6783 6.7856 3.0245 22 1 13.4496 7.4324 3.7282 23 6 3.5780 -1.2017 -0.0001 24 6 2.1969 -1.1984 0.0004 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 1.6551 2.1328 -0.0004 29 1 4.1162 2.1382 -0.0010 30 1 6.1560 -0.7011 -0.4769 31 1 8.2855 0.1222 0.9109 32 1 8.1372 1.1659 -0.5232 33 1 9.8409 4.4642 1.7012 34 1 9.9886 3.4205 3.1354 35 1 12.1759 2.5947 2.3082 36 1 12.0276 3.6387 0.8741 37 1 15.4650 4.2317 2.0547 38 1 4.1163 -2.1380 -0.0005 39 1 1.6553 -2.1327 0.0008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291364032.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:50 Heat of formation + Delta-G solvation = -106.975356 kcal Electronic energy + Delta-G solvation = -21428.972791 eV Core-core repulsion = 17915.344936 eV Total energy + Delta-G solvation = -3513.627855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.92706 -40.00359 -38.79408 -36.20162 -35.33111 -33.61571 -32.11245 -31.25411 -31.20662 -29.16555 -26.53242 -25.67686 -23.35392 -22.48603 -21.75463 -20.68883 -19.91885 -18.28796 -17.66642 -16.96641 -16.73569 -16.33158 -15.79958 -15.59886 -15.34773 -14.78079 -14.48870 -14.31605 -14.08199 -13.81090 -13.71873 -13.47380 -12.68391 -12.51461 -12.45866 -12.26876 -12.25574 -11.92006 -11.43073 -11.24460 -10.96941 -10.65768 -10.64340 -10.55735 -10.13710 -10.07274 -10.00295 -9.60434 -9.21506 -9.19782 -8.39059 -8.31430 -6.03026 -4.07816 0.92550 1.12130 2.21538 2.24841 2.70104 3.30515 3.31639 3.38085 3.41758 3.48999 4.25950 4.43816 4.53199 4.59300 4.72573 4.91335 4.92704 4.96902 5.09208 5.21997 5.27808 5.32636 5.39154 5.44602 5.58247 5.72661 5.98640 6.01163 6.09931 6.16883 6.19503 6.32952 6.50231 6.73717 6.82540 6.96948 7.64184 7.70136 7.75102 7.95814 8.16186 8.34581 8.99052 9.56429 11.07969 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.049359 B = 0.002155 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.138743 B =12991.113083 C =13449.124173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.105 4.105 3 C -0.100 4.100 4 C -0.117 4.117 5 C 0.144 3.856 6 N -0.674 5.674 7 C 0.516 3.484 8 O -0.493 6.493 9 C 0.047 3.953 10 O -0.342 6.342 11 C 0.460 3.540 12 O -0.504 6.504 13 C -0.102 4.102 14 C 0.033 3.967 15 C -0.529 4.529 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.142 4.142 24 C -0.102 4.102 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.126 0.874 29 H 0.136 0.864 30 H 0.413 0.587 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.262 0.738 38 H 0.126 0.874 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.874 -11.767 -6.655 29.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.105 4.105 3 C -0.118 4.118 4 C -0.137 4.137 5 C 0.051 3.949 6 N -0.322 5.322 7 C 0.302 3.698 8 O -0.365 6.365 9 C -0.031 4.031 10 O -0.259 6.259 11 C 0.303 3.697 12 O -0.391 6.391 13 C -0.139 4.139 14 C -0.004 4.004 15 C -0.567 4.567 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.162 4.162 24 C -0.121 4.121 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.144 0.856 29 H 0.154 0.846 30 H 0.249 0.751 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.144 0.856 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -25.820 -11.394 -6.408 28.941 hybrid contribution 0.864 0.129 0.139 0.884 sum -24.957 -11.265 -6.269 28.090 Atomic orbital electron populations 1.20764 0.91128 1.02779 1.02218 1.19934 0.96219 0.93133 1.01257 1.20950 0.93483 0.97769 0.99645 1.21199 0.94296 0.97718 1.00469 1.17702 0.82014 0.94266 1.00939 1.43368 1.04876 1.29475 1.54445 1.20421 0.89420 0.81108 0.78816 1.90775 1.69800 1.38474 1.37412 1.22464 0.90450 0.91535 0.98644 1.86666 1.26904 1.46300 1.66035 1.24982 0.78632 0.86664 0.79385 1.90645 1.60135 1.46534 1.41754 1.21811 1.00585 0.92401 0.99116 1.19041 0.84915 0.98021 0.98437 1.21157 0.92133 1.12521 1.30868 0.92222 1.25018 0.97205 0.96547 0.95566 1.69991 1.04003 1.37467 1.41366 0.86526 0.78622 0.82465 0.79973 1.20597 1.21188 1.19765 1.20874 0.94567 0.96368 1.04395 1.20805 0.93241 0.97689 1.00324 0.91277 0.91630 0.91539 0.85639 0.84616 0.75076 0.88049 0.87918 0.88647 0.88646 0.95534 0.95516 0.92843 0.85587 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.01 36.01 0.36 -0.27 16 2 C -0.10 -0.85 5.88 -104.59 -0.62 -1.47 16 3 C -0.10 -0.94 9.69 -39.61 -0.38 -1.32 16 4 C -0.12 -1.31 8.66 -39.39 -0.34 -1.65 16 5 C 0.14 1.46 6.28 -83.69 -0.53 0.94 16 6 N -0.67 -6.12 5.34 -9.86 -0.05 -6.17 16 7 C 0.52 6.41 7.65 -10.99 -0.08 6.32 16 8 O -0.49 -8.08 14.19 -14.12 -0.20 -8.28 16 9 C 0.05 0.58 5.95 36.00 0.21 0.80 16 10 O -0.34 -5.79 9.75 -45.89 -0.45 -6.24 16 11 C 0.46 8.90 7.96 36.00 0.29 9.19 16 12 O -0.50 -10.91 15.73 -18.76 -0.30 -11.20 16 13 C -0.10 -2.08 5.75 -27.88 -0.16 -2.24 16 14 C 0.03 0.86 4.26 -27.88 -0.12 0.74 16 15 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 19 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 C -0.14 -1.16 9.96 -39.40 -0.39 -1.55 16 24 C -0.10 -0.78 9.69 -39.61 -0.38 -1.17 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 27 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 28 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 29 H 0.14 1.72 6.41 -52.49 -0.34 1.38 16 30 H 0.41 2.24 8.82 -40.82 -0.36 1.88 16 31 H 0.10 1.08 8.13 -51.93 -0.42 0.66 16 32 H 0.10 1.10 8.13 -51.93 -0.42 0.68 16 33 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 34 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 35 H 0.03 0.75 8.10 -51.93 -0.42 0.32 16 36 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -35.06 343.98 -7.95 -43.01 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -5.30 Total: -1.45 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -2.56 Total: -5.16 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.68 Total: -32.30 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.94 Total: -25.72 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.06 -7.95 -43.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291364032.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.965 kcal (2) G-P(sol) polarization free energy of solvation -35.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds